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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071930 ID=TCONS_00071930|Name=TCONS_00071930|organism=Clytia hemisphaerica|type=transcript|length=688bp
GAGTTGCCAAGTATTTTGTTCAACATAACAACGCATATTTGTCATCACTT
TacacaaaatatgaaaaagttcGGACCGTTGTATGCAACCTGGATGTACT
GTCTGGAGAGATTCAACTCCTGGATTACACGTAGGACAAATAATAAGAAC
CATATGGAAAGATGTGTGATGGAAACTTATCAGCTATTCGACTGGGTCGT
ACACTGCTCAATTACAAACAAGTTTCCGGAATCATTCGACTCTAAGAACG
CTGTGTGCCGGAAGACTCTTGTCAAAACGGGTGAATTTGAAAGAATCACG
AAGAAGCGAGCAGATTCGACGTTGACGAATGAATCAGATTTACGCGCTTT
GAATGTTCTCCTTTCACCGAAAGATCCAATAAAAAGTGCAACACTCTTAA
AAAAAGCCAGCGAACTAAACGAGTACTTCGAAGACTATACAATTAATGTC
GGCAGCCATTGTCAGGTCGATGAAAAGACATGTTGTCAAATCGAAAGGAT
CGTGCAGGTTAATGTCGACGGCAAAAATGTTGTTGTGCTCCATATCAAAA
CATATAATCTCAACATCGATTCAGAAACAGgACTGTATTATAGACTTAAA
GATGCCATTCCAATTCAAAGTGGCTTCACATTACCGAAGTTTGCTGGGGA
GCCATCAGTATATGCTTCAGAAGAGGACAAAATATGGC Run BLAST on NCBI protein sequence of TCONS_00071930-protein >TCONS_00071930-protein ID=TCONS_00071930-protein|Name=TCONS_00071930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
ELPSILFNITTHICHHFTQNMKKFGPLYATWMYCLERFNSWITRRTNNKN
HMERCVMETYQLFDWVVHCSITNKFPESFDSKNAVCRKTLVKTGEFERIT
KKRADSTLTNESDLRALNVLLSPKDPIKSATLLKKASELNEYFEDYTINV
GSHCQVDEKTCCQIERIVQVNVDGKNVVVLHIKTYNLNIDSETGLYYRLK
DAIPIQSGFTLPKFAGEPSVYASEEDKIW Run BLAST on NCBI transcript from alignment at scaffold_65:236656..237970+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071930 ID=TCONS_00071930|Name=TCONS_00071930|organism=Clytia hemisphaerica|type=transcript|length=1315bp|location=Sequence derived from alignment at scaffold_65:236656..237970+ (Clytia hemisphaerica)
GAGTTGCCAAGTATTTTGTTCAACATAACAACGCATATTTGTCATCACTT
TacacaaaatatgaaaaagttcGGACCGTTGTATGCAACCTGGATGTACT
GTCTGGAGAGATTCAACTCCTGGATTACACGTAGGACAAATAATAAGAAC
CATATGGAAAGATGTGTGATGGAAACTTATCAGGTGAATAATTCCTATTT
TGCCTGCTTTCGGTTTTTTAATCAATGATTGATTCCTTTAATATTGGCAT
AAGTATAATCGCAGGAGGTATCTttataaatgataaattttattttaagc
tTAGAGGACCTCTTGACAAATAAACTTcatcttcaaaagaaaaaaattta
aaagctgtttttaaataatttttaataaatcCCATATAATTTGTATTTAG
CTATTCGACTGGGTCGTACACTGCTCAATTACAAACAAGTTTCCGGAATC
ATTCGACTCTAAGAACGCTGTGTGCCGGAAGACTCTTGTCAAAACGGGTG
AATTTGAAAGAATCACGAAGAAGCGAGCAGATTCGACGTTGACGAATGAA
TCAGATTTACGCGCTTTGAATGTTCTCCTTTCACCGAAAGATCCAATAAA
AAGTGCAACACTCTTAAAAAAAGCCAGCGAACTAAACGAGTACTTCGAAG
ACTATACAATTAATGTCGGCAGCCATTGTCAGGTCGATGAAAAGACATGT
TGTCAAATCGAAAGGATCGTGCAGGTTAATGTCGACGGCAAAAATGTTGT
TGTGCTCCATATCAAAACATATAATCTCAACATCGATTCAGAAACAGGTA
TTCAAAGTAGTTTTAAGACAATCAAATTGAGAAAGTTAGTTTTTCTAGAA
TTCTAATGAATGGTGTTGTGGTAAAGTTTCTTATaatcttcttttaaacg
ccccttctAAAAGGAAAATTGTTTAACAAACTCCtgctcaaataaacgcc
cccttcgaatgaACGCCTCCTCTAGGCGAGAGACATTTACAACTAAAGCA
AGGGGTAGGTTTGCTCTAAATATTTGACGTTAGActcaaataatttaata
aacgcccccttcgaataaacgcctctCCTAAAATCGAAAGAATTAAATaa
attcgaagtaatacggtattagAACCATGAATAAAAAGGATTCTAATGGA
AACATTCCTTCCAGAAcacattcaaatcaaaatgatatcgcgtttttttt
caaacaggACTGTATTATAGACTTAAAGATGCCATTCCAATTCAAAGTGG
CTTCACATTACCGAAGTTTGCTGGGGAGCCATCAGTATATGCTTCAGAAG
AGGACAAAATATGGC Coding sequence (CDS) from alignment at scaffold_65:236656..237970+ >TCONS_00071930 ID=TCONS_00071930|Name=TCONS_00071930|organism=Clytia hemisphaerica|type=CDS|length=2061bp|location=Sequence derived from alignment at scaffold_65:236656..237970+ (Clytia hemisphaerica)
GAGTTGCCAAGTATTTTGTTCAACATAACAACGCATATTTGTCATCACTT
TacacaaaatatgaaaaagttcGGACCGTTGTATGCAACCTGGATGTACT
GTCTGGAGAGATTCAACTCCTGGATTACACGTAGGACAAATAATAAGAAC
CATATGGAAAGATGTGTGATGGAAACTTATCAGCTATTCGACTGGGTCGT
ACACTGCTCAATTACAAACAAGTTTCCGGAATCATTCGACTCTAAGAACG
CTGTGTGCCGGAAGACTCTTGTCAAAACGGGTGAATTTGAAAGAATCACG
AAGAAGCGAGCAGATTCGACGTTGACGAATGAATCAGATTTACGCGCTTT
GAATGTTCTCCTTTCACCGAAAGATCCAATAAAAAGTGCAACACTCTTAA
AAAAAGCCAGCGAACTAAACGAGTACTTCGAAGACTATACAATTAATGTC
GGCAGCCATTGTCAGGTCGATGAAAAGACATGTTGTCAAATCGAAAGGAT
CGTGCAGGTTAATGTCGACGGCAAAAATGTTGTTGTGCTCCATATCAAAA
CATATAATCTCAACATCGATTCAGAAACAGgACTGTATTATAGACTTAAA
GATGCCATTCCAATTCAAAGTGGCTTCACATTACCGAAGTTTGCTGGGGA
GCCATCAGTATATGCTTCAGAAGAGGACAAAATATGGGAGTTGCCAAGTA
TTTTGTTCAACATAACAACGCATATTTGTCATCACTTTacacaaaatatg
aaaaagttcGGACCGTTGTATGCAACCTGGATGTACTGTCTGGAGAGATT
CAACTCCTGGATTACACGTAGGACAAATAATAAGAACCATATGGAAAGAT
GTGTGATGGAAACTTATCAGCTATTCGACTGGGTCGTACACTGCTCAATT
ACAAACAAGTTTCCGGAATCATTCGACTCTAAGAACGCTGTGTGCCGGAA
GACTCTTGTCAAAACGGGTGAATTTGAAAGAATCACGAAGAAGCGAGCAG
ATTCGACGTTGACGAATGAATCAGATTTACGCGCTTTGAATGTTCTCCTT
TCACCGAAAGATCCAATAAAAAGTGCAACACTCTTAAAAAAAGCCAGCGA
ACTAAACGAGTACTTCGAAGACTATACAATTAATGTCGGCAGCCATTGTC
AGGTCGATGAAAAGACATGTTGTCAAATCGAAAGGATCGTGCAGGTTAAT
GTCGACGGCAAAAATGTTGTTGTGCTCCATATCAAAACATATAATCTCAA
CATCGATTCAGAAACAGgACTGTATTATAGACTTAAAGATGCCATTCCAA
TTCAAAGTGGCTTCACATTACCGAAGTTTGCTGGGGAGCCATCAGTATAT
GCTTCAGAAGAGGACAAAATATGGGAGTTGCCAAGTATTTTGTTCAACAT
AACAACGCATATTTGTCATCACTTTacacaaaatatgaaaaagttcGGAC
CGTTGTATGCAACCTGGATGTACTGTCTGGAGAGATTCAACTCCTGGATT
ACACGTAGGACAAATAATAAGAACCATATGGAAAGATGTGTGATGGAAAC
TTATCAGCTATTCGACTGGGTCGTACACTGCTCAATTACAAACAAGTTTC
CGGAATCATTCGACTCTAAGAACGCTGTGTGCCGGAAGACTCTTGTCAAA
ACGGGTGAATTTGAAAGAATCACGAAGAAGCGAGCAGATTCGACGTTGAC
GAATGAATCAGATTTACGCGCTTTGAATGTTCTCCTTTCACCGAAAGATC
CAATAAAAAGTGCAACACTCTTAAAAAAAGCCAGCGAACTAAACGAGTAC
TTCGAAGACTATACAATTAATGTCGGCAGCCATTGTCAGGTCGATGAAAA
GACATGTTGTCAAATCGAAAGGATCGTGCAGGTTAATGTCGACGGCAAAA
ATGTTGTTGTGCTCCATATCAAAACATATAATCTCAACATCGATTCAGAA
ACAGgACTGTATTATAGACTTAAAGATGCCATTCCAATTCAAAGTGGCTT
CACATTACCGAAGTTTGCTGGGGAGCCATCAGTATATGCTTCAGAAGAGG
ACAAAATATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071930-exon-scaffold_65-1491911889:236656..236838 | TCONS_00071930-exon-scaffold_65-1491911889:236656..236838 | Clytia hemisphaerica | exon |
| TCONS_00071930-exon-scaffold_65-1510915933:236656..236838 | TCONS_00071930-exon-scaffold_65-1510915933:236656..236838 | Clytia hemisphaerica | exon |
| TCONS_00071930-exon-scaffold_65-1575043694:236656..236838 | TCONS_00071930-exon-scaffold_65-1575043694:236656..236838 | Clytia hemisphaerica | exon |
| TCONS_00071930-exon-scaffold_65-1491911889:237056..237452 | TCONS_00071930-exon-scaffold_65-1491911889:237056..237452 | Clytia hemisphaerica | exon |
| TCONS_00071930-exon-scaffold_65-1510915933:237056..237452 | TCONS_00071930-exon-scaffold_65-1510915933:237056..237452 | Clytia hemisphaerica | exon |
| TCONS_00071930-exon-scaffold_65-1575043694:237056..237452 | TCONS_00071930-exon-scaffold_65-1575043694:237056..237452 | Clytia hemisphaerica | exon |
| TCONS_00071930-exon-scaffold_65-1491911889:237863..237970 | TCONS_00071930-exon-scaffold_65-1491911889:237863..237970 | Clytia hemisphaerica | exon |
| TCONS_00071930-exon-scaffold_65-1510915933:237863..237970 | TCONS_00071930-exon-scaffold_65-1510915933:237863..237970 | Clytia hemisphaerica | exon |
| TCONS_00071930-exon-scaffold_65-1575043694:237863..237970 | TCONS_00071930-exon-scaffold_65-1575043694:237863..237970 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_65 | supercontig | scaffold_65:236656..237970 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025452 | DUF4218 |
Blast
The following BLAST results are available for this feature:
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