TCONS_00071914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071914
Unique NameTCONS_00071914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071914 ID=TCONS_00071914|Name=TCONS_00071914|organism=Clytia hemisphaerica|type=transcript|length=586bp
GTGTATTTGACATGGAACAGTATCGATAATCCTGTGTTCCGGATGAAGTA
CATTTTATATGGCGTTCGAATAATCCATTGTTTATCACTTTTGATTACGT
CATTTCAAATACTCACTAAAATAGACGACATGGTgagtaagaaaaagaag
aaataagaCCTAATTTATGATtggattttaatgaaaaaagtcTTTGTATT
AAATCTTTTAGGGTAAGAAATTATTTCATCAATTCATTATATACAATtat
ttacataaattttacGAAAATATTTCTACATTGTCAAATAATCATATata
caaaatcataaagaaaGTTCTGGAATAACAGACGAGATGGAACCATGTGT
CAATTTCCTCCATTTTATTCTACGGTTCTGAAACCAAACTTTGACTTGAA
TTTCATTCAAACCAAGTTGTCTTGCAAGAAAACGTCTCTCTTGACCAACG
ATATATTGTTGCTGTTGGAATTCAAACTCTAACCGTTCAAGTTGACTTGA
CGTGAAAATGGTCCGTCGACGTTTGCTGTATCGATTGCTCGTATCGTCAA
TGTCGTTGAAATATTTGGAATACTTCAAATTGAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_65:23724..24500+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071914 ID=TCONS_00071914|Name=TCONS_00071914|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at scaffold_65:23724..24500+ (Clytia hemisphaerica)
GTGTATTTGACATGGAACAGTATCGATAATCCTGGTAAGCTTTTTCCTTT AGAATATTTAAATATCAACCTGTGATGACAGATCGGAATTCTACATCTCA GAATTCTGATAATCATTTCTGAATCTAAATGTACGAAGGACAACAAGAGA AATTAAGAAACAAGAATTGCATTCAGATGGCCGAAAATCCTTTGAAAact tcttcaaacttttctctAATTTCAGTGTTCCGGATGAAGTACATTTTATA TGGCGTTCGAATAATCCATTGTTTATCACTTTTGATTACGTCATTTCAAA TACTCACTAAAATAGACGACATGGTgagtaagaaaaagaagaaataagaC CTAATTTATGATtggattttaatgaaaaaagtcTTTGTATTAAATCTTTT AGGGTAAGAAATTATTTCATCAATTCATTATATACAATtatttacataaa ttttacGAAAATATTTCTACATTGTCAAATAATCATATatacaaaatcat aaagaaaGTTCTGGAATAACAGACGAGATGGAACCATGTGTCAATTTCCT CCATTTTATTCTACGGTTCTGAAACCAAACTTTGACTTGAATTTCATTCA AACCAAGTTGTCTTGCAAGAAAACGTCTCTCTTGACCAACGATATATTGT TGCTGTTGGAATTCAAACTCTAACCGTTCAAGTTGACTTGACGTGAAAAT GGTCCGTCGACGTTTGCTGTATCGATTGCTCGTATCGTCAATGTCGTTGA AATATTTGGAATACTTCAAATTGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044652XLOC_044652Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071914-exon-scaffold_65-1491911889:23724..23757TCONS_00071914-exon-scaffold_65-1491911889:23724..23757Clytia hemisphaericaexon
TCONS_00071914-exon-scaffold_65-1510915933:23724..23757TCONS_00071914-exon-scaffold_65-1510915933:23724..23757Clytia hemisphaericaexon
TCONS_00071914-exon-scaffold_65-1575043694:23724..23757TCONS_00071914-exon-scaffold_65-1575043694:23724..23757Clytia hemisphaericaexon
TCONS_00071914-exon-scaffold_65-1491911889:23949..24500TCONS_00071914-exon-scaffold_65-1491911889:23949..24500Clytia hemisphaericaexon
TCONS_00071914-exon-scaffold_65-1510915933:23949..24500TCONS_00071914-exon-scaffold_65-1510915933:23949..24500Clytia hemisphaericaexon
TCONS_00071914-exon-scaffold_65-1575043694:23949..24500TCONS_00071914-exon-scaffold_65-1575043694:23949..24500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:23724..24500 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.376422 0.0974363 0.106551 0 0 0 0 0.113267 0 0 0 0.188021 0.412095 0.399152 0.280537 0.441007 0.493665 0.0984505 0 0 0.144498 0 0.173005 0 0 0.236638 0 0 0.689669 0.676576
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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