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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071904 ID=TCONS_00071904|Name=TCONS_00071904|organism=Clytia hemisphaerica|type=transcript|length=1151bp
CGTGGCACGAAGAGAGAAAGGAGGAAAGGAGAGCGCGCAAGAGATATGAG
ATGATGATCGAGTAAGAGATTGATTTGTGATAAGTAGTTTACAGTGAAGT
GACGTCAACAACCTATTGTGATTATAAATAGTAACACCATTTAAATATTA
GGTTCAACCGTTCTTTCTCAATCTTTAATTTGCTTTGGAGAGAGATGCTG
TACGGTCATGTCTGAGGTGACATGCGAGATATATGACGGTTTGgaacttt
tttatgttttgacaTATCGTGTCAAGTTGCTGACAAACAGGAGATGCAGA
CTATTGGTGGAAGATTAGATTTTGAAGTTAtttgtttatgatatttttgt
tgcttggcgttttgttttgatttgctttTTTGCTTGAATACTGTGTGTGG
AAACCGACGTGGAAACTGAACTGAAATCACATTTTCGTTAACAGAATACT
GTAGAAATGATCTCATCACTCCGATCAGGATGATCAGAACAGTTGAGGGG
AAAACAGTCCTGTGAATTTCTATGTGGTTGATTATCATTAATGAGTGATT
TCTATAAATGGTTCTTTCTACAGTATGATACTTCGACGACATTGATCGTT
ATATAGAGACCTCTTCAAAGTCGTAGGAGCTCCTTGGAGGGTTCTATCAG
TACACCATCGGTTTTCGATCTGCACAGTCCCAATTCTGAATTTACATTTC
CATTAAAATCACATCTGAGATTGATTGTACATTGAACTAATTCCATGAAG
GCGGGTGGTTTTCAGACTATAAAATGAATCTCAAAAAATATCTCCATCCC
ATCTCCATTCAGTATTGGTTGAATGAGaagttttttgattgaatttgatt
CTCTTTCAATAAAGATGCTGGTACGATAGACTATAGATAATCGTGAATTT
CAGGAAAAGTAATGAAAATAGCTCTTTAATTATTcatatctaccattttg
attatGTCTTTAATTTTTCGGATTTTTCGGATGTTTCGATGAAGATTTTG
GTGAGGCGTAGGTAGATGGTTCTGACGTTCGAAAATCAAAAGTGTGAAAA
GCAGCGAAAATTTGTATATATATGTTAATAACTCAATGACTTCAATCTCA
ACAGTATGAAATGTCGGGGTAGTTGTTGCATAGCGTATATATTTTGAAAG
C Run BLAST on NCBI protein sequence of TCONS_00071904-protein >TCONS_00071904-protein ID=TCONS_00071904-protein|Name=TCONS_00071904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MSSKYHTVERTIYRNHSLMIINHIEIHRTVFPSTVLIILIGVMRSFLQYS
VNENVISVQFPRRFPHTVFKQKSKSKQNAKQQKYHKQITSKSNLPPIVCI
SCLSAT Run BLAST on NCBI transcript from alignment at scaffold_64:191420..192570 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071904 ID=TCONS_00071904|Name=TCONS_00071904|organism=Clytia hemisphaerica|type=transcript|length=1151bp|location=Sequence derived from alignment at scaffold_64:191420..192570 (Clytia hemisphaerica)
GCTTTCAAAATATATACGCTATGCAACAACTACCCCGACATTTCATACTG
TTGAGATTGAAGTCATTGAGTTATTAACATATATATACAAATTTTCGCTG
CTTTTCACACTTTTGATTTTCGAACGTCAGAACCATCTACCTACGCCTCA
CCAAAATCTTCATCGAAACATCCGAAAAATCCGAAAAATTAAAGACataa
tcaaaatggtagatatgAATAATTAAAGAGCTATTTTCATTACTTTTCCT
GAAATTCACGATTATCTATAGTCTATCGTACCAGCATCTTTATTGAAAGA
GaatcaaattcaatcaaaaaacttCTCATTCAACCAATACTGAATGGAGA
TGGGATGGAGATATTTTTTGAGATTCATTTTATAGTCTGAAAACCACCCG
CCTTCATGGAATTAGTTCAATGTACAATCAATCTCAGATGTGATTTTAAT
GGAAATGTAAATTCAGAATTGGGACTGTGCAGATCGAAAACCGATGGTGT
ACTGATAGAACCCTCCAAGGAGCTCCTACGACTTTGAAGAGGTCTCTATA
TAACGATCAATGTCGTCGAAGTATCATACTGTAGAAAGAACCATTTATAG
AAATCACTCATTAATGATAATCAACCACATAGAAATTCACAGGACTGTTT
TCCCCTCAACTGTTCTGATCATCCTGATCGGAGTGATGAGATCATTTCTA
CAGTATTCTGTTAACGAAAATGTGATTTCAGTTCAGTTTCCACGTCGGTT
TCCACACACAGTATTCAAGCAAAaaagcaaatcaaaacaaaacgccaagc
aacaaaaatatcataaacaaaTAACTTCAAAATCTAATCTTCCACCAATA
GTCTGCATCTCCTGTTTGTCAGCAACTTGACACGATAtgtcaaaacataa
aaaagttcCAAACCGTCATATATCTCGCATGTCACCTCAGACATGACCGT
ACAGCATCTCTCTCCAAAGCAAATTAAAGATTGAGAAAGAACGGTTGAAC
CTAATATTTAAATGGTGTTACTATTTATAATCACAATAGGTTGTTGACGT
CACTTCACTGTAAACTACTTATCACAAATCAATCTCTTACTCGATCATCA
TCTCATATCTCTTGCGCGCTCTCCTTTCCTCCTTTCTCTCTTCGTGCCAC
G Coding sequence (CDS) from alignment at scaffold_64:191420..192570 >TCONS_00071904 ID=TCONS_00071904|Name=TCONS_00071904|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_64:191420..192570 (Clytia hemisphaerica)
ATGTCGTCGAAGTATCATACTGTAGAAAGAACCATTTATAGAAATCACTC
ATTAATGATAATCAACCACATAGAAATTCACAGGACTGTTTTCCCCTCAA
CTGTTCTGATCATCCTGATCGGAGTGATGAGATCATTTCTACAGTATTCT
GTTAACGAAAATGTGATTTCAGTTCAGTTTCCACGTCGGTTTCCACACAC
AGTATTCAAGCAAAaaagcaaatcaaaacaaaacgccaagcaacaaaaat
atcataaacaaaTAACTTCAAAATCTAATCTTCCACCAATAGTCTGCATC
TCCTGTTTGTCAGCAACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071904-exon-scaffold_64-1491911889:191420..192570 | TCONS_00071904-exon-scaffold_64-1491911889:191420..192570 | Clytia hemisphaerica | exon |
| TCONS_00071904-exon-scaffold_64-1510915933:191420..192570 | TCONS_00071904-exon-scaffold_64-1510915933:191420..192570 | Clytia hemisphaerica | exon |
| TCONS_00071904-exon-scaffold_64-1575043694:191420..192570 | TCONS_00071904-exon-scaffold_64-1575043694:191420..192570 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:191420..192570 . |
Blast
The following BLAST results are available for this feature:
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