TCONS_00071897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071897
Unique NameTCONS_00071897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071897 ID=TCONS_00071897|Name=TCONS_00071897|organism=Clytia hemisphaerica|type=transcript|length=594bp
GGATAGTCGAGTAGAATTACAGTTTCCCCCTTAAAAACAATAATTTGCGG
CTGAAAGTTCTAGATCCACAAAGAGAAAGAAGATCCGCAGTtgattcaaa
aagtttttgatccTTTTTGGGGGATTTTATAATGGCATCAATTTTCACTA
GGAACCTATAAAACAATTCTTTAGTAAACTTTCTTTAGTAACTTTGCATT
TccataaaataacaaaaaatatgtGTTTTCTTGTTCCACTTCCTGGGAGT
ATTAAACATCGGCATCATTAAATGATAATAAACCATAAGGATCGCGTGTT
TGGCGCATGCGTGTTTTACGTGTTGCTATTGTTCTCAATGTGATTGTTGT
TGATGAACTTTCAGTATAACGGTAGTTATTCGTTACTCTGTTGTCTTGTT
TGGCATTAAtccttttcttttctatttctcGAAGAAATTCATCGTGTTCT
TCTTTGTATGATAAAACTTTCTTTAACATGAACGGAACCAAAAAGTAAGT
GATCACAATCAGGGAAAAACAACAGCAAGTCATTGTCATTTGTCTGTGCG
TCGCCATTGTTGTTTCAATTCAAGCCATTACCGAGCCATTAGCA
Run BLAST on NCBI

protein sequence of TCONS_00071897-protein

>TCONS_00071897-protein ID=TCONS_00071897-protein|Name=TCONS_00071897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MATHRQMTMTCCCFSLIVITYFLVPFMLKKVLSYKEEHDEFLREIEKKRI
NAKQDNRVTNNYRYTESSSTTITLRTIATRKTRMRQTRDPYGLLSFNDAD
V
Run BLAST on NCBI

transcript from alignment at scaffold_64:135409..136002

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071897 ID=TCONS_00071897|Name=TCONS_00071897|organism=Clytia hemisphaerica|type=transcript|length=594bp|location=Sequence derived from alignment at scaffold_64:135409..136002 (Clytia hemisphaerica)
TGCTAATGGCTCGGTAATGGCTTGAATTGAAACAACAATGGCGACGCACA
GACAAATGACAATGACTTGCTGTTGTTTTTCCCTGATTGTGATCACTTAC
TTTTTGGTTCCGTTCATGTTAAAGAAAGTTTTATCATACAAAGAAGAACA
CGATGAATTTCTTCgagaaatagaaaagaaaaggaTTAATGCCAAACAAG
ACAACAGAGTAACGAATAACTACCGTTATACTGAAAGTTCATCAACAACA
ATCACATTGAGAACAATAGCAACACGTAAAACACGCATGCGCCAAACACG
CGATCCTTATGGTTTATTATCATTTAATGATGCCGATGTTTAATACTCCC
AGGAAGTGGAACAAGAAAACacatattttttgttattttatggAAATGCA
AAGTTACTAAAGAAAGTTTACTAAAGAATTGTTTTATAGGTTCCTAGTGA
AAATTGATGCCATTATAAAATCCCCCAAAAAggatcaaaaactttttgaa
tcaACTGCGGATCTTCTTTCTCTTTGTGGATCTAGAACTTTCAGCCGCAA
ATTATTGTTTTTAAGGGGGAAACTGTAATTCTACTCGACTATCC

Coding sequence (CDS) from alignment at scaffold_64:135409..136002

>TCONS_00071897 ID=TCONS_00071897|Name=TCONS_00071897|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_64:135409..136002 (Clytia hemisphaerica)
ATGGCGACGCACAGACAAATGACAATGACTTGCTGTTGTTTTTCCCTGAT
TGTGATCACTTACTTTTTGGTTCCGTTCATGTTAAAGAAAGTTTTATCAT
ACAAAGAAGAACACGATGAATTTCTTCgagaaatagaaaagaaaaggaTT
AATGCCAAACAAGACAACAGAGTAACGAATAACTACCGTTATACTGAAAG
TTCATCAACAACAATCACATTGAGAACAATAGCAACACGTAAAACACGCA
TGCGCCAAACACGCGATCCTTATGGTTTATTATCATTTAATGATGCCGAT
GTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044635XLOC_044635Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071897-proteinTCONS_00071897-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071897-exon-scaffold_64-1491911889:135409..136002TCONS_00071897-exon-scaffold_64-1491911889:135409..136002Clytia hemisphaericaexon
TCONS_00071897-exon-scaffold_64-1510915933:135409..136002TCONS_00071897-exon-scaffold_64-1510915933:135409..136002Clytia hemisphaericaexon
TCONS_00071897-exon-scaffold_64-1575043694:135409..136002TCONS_00071897-exon-scaffold_64-1575043694:135409..136002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:135409..136002 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.09215	0.0898607	0.313011	0	0	0	0.118473	0.110913	0.077653	0	0	0.0613714	1.04186	0.8274	1.20349	2.18999	0.345883	0.567231	5.19175	1.43508	4.09841	2.99859	1.69052	2.30539	0	0.529795	0	0	0.204559	0.312619
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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