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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071894 ID=TCONS_00071894|Name=TCONS_00071894|organism=Clytia hemisphaerica|type=transcript|length=1940bp
AACGAAACAAATCCAATAAAATTCTCTCATCTTTGGCCATTTCAGATGCA
TTGACTGGTCTGGTTGTATTCCCTATAAACGCTTACCAAACGTTATCACC
AAATGCTCGACTTAGTTGCTCAATAGACTTTGCAAGAGCTTATTTTGCGT
TGCTCATGTCTGGTTCATCAGTCTTAACCCTAGTGGTAATTGCTCTGGAT
AGGtacattttaatgaccagataTGCATCATACCACTTTATCATGACAGA
ACGGAAGATAGTTATCATGCTTATAGCGTGTTGGTTGTACCCTGGGTTGA
CACCATTACTCAAATATGCCGGCGAAACACCGTATCTTATCAATATGATT
TTGATATTCTTCGGACCAATCATTCTCCTTATAATATTGTATTGTCTATT
GATTCGACTTATTTATGAAAGTAGGAAAAAGGTAATCGCGCATGCGTCAA
AGACAACCAATATTGTGGAAACTCAAGATGGTAGATTAGAAATGGCACCG
AGTTCTTCAAATTTAACCGAAGCTGATATAATTGACCAACCAACTAAAAG
TAAATTGAGTCCAACAGTCTCGGCAGTTTCGGCTAgcaaaaaatcaagta
aacgaCATATGAAGCTTGCTAAGTCAGTATCAGTGCTTTTAGGATGCTAT
TTGATTTGTCTTACACCGTTCAATCTTTGGATGATACTGGATATGGTCAA
CAAAGCAAGTGGACGTATAAGTTCGGTACACCTACAACATTTATACATGT
TTGGAGTTTTTGNTTCTATATCCTCTGGATGCCTGACCAACGAAACAAAT
CCAATAAAATTCTCTCATCTTTGGCCATTTCAGATGCATTGACTGGTCTG
GTTGTATTCCCTATAAACGCTTACCAAACGTTATCACCAAATGCTCGACT
TAGTTGCTCAATAGACTTTGCAAGAGCTTATTTTGCGTTGCTCATGTCTG
GTTCATCAGTCTTAACCCTAGTGGTAATTGCTCTGGATAGGtacatttta
atgaccagataTGCATCATATCACTTTATCATGACAGAACGGAAGATAGT
TATCATGCTTATAGCGTGTTGGTTGTACCCTGGGTTGACACCGTTACTCA
AATATGCCGGCGAAACACCGTATCTTATCAATATGATTTTGATATTCTTC
GGACCAATCATTCTCCTTATAATATTATATTGTCTATTGATTCGACTTAT
TTATGAAAGTAGGAAAAAGGTAATCGCGCATGCGTCAAAGACAACCAATA
TTGTGGAAACTCAAGATGGTAGATTAGAAATGGCACCGAGTTCTTCAAAT
TTAACCGAAGCTGATATAATTGACCAACCAACTAAAAGTAAATTGAGTCC
AACAGTCTCGGCAGTTTCGGCTAgcaaaaaatcaagtaaacgaCATATGA
AGCTTGCTAAGTCAGTATCAGTGCTTTTAGGATGCTATTTGATTTGTCTT
ACACCGTTCAATCTTTGGATGATACTGGATATGGTCAACAAAGCAAGTGG
ACGTATAAGTTCGGTACACCTACAACATTTATACATGTTTGGAGTTTTTG
CAGGAGCAGCTAACAGCTGTGTTAATCCGTTCATTTATTTGTCAAAACAA
CCGGGTTTTCGGAAACGTTTTCGGAATATATTGACTCAGATAAGTAATAA
TGTTCTTTGATTGCGTGCACCTTTcgaagaaaatcaataaacccGATTTA
CAGATTGTATTTTAGATTTGCATATTGTACTAGCGAACCGTCAATATAGT
GTCTCCGAATACACAGGTTAAAGTCTGATGACAAATCacgtttttctcga
aatttttatgtgcttgtacatgacatttatttctgattggttcgaattat
tgacactaataaatttatcagctgtaagttgtaaagtaAGTaacattgga
aaaaaatcacgtgaaccttttcgagtaatcacatatGTTT Run BLAST on NCBI protein sequence of TCONS_00071894-protein >TCONS_00071894-protein ID=TCONS_00071894-protein|Name=TCONS_00071894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MLFDLSYTVQSLDDTGYGQQSKWTYKFGTPTTFIHVWSFXFYILWMPDQR
NKSNKILSSLAISDALTGLVVFPINAYQTLSPNARLSCSIDFARAYFALL
MSGSSVLTLVVIALDRYILMTRYASYHFIMTERKIVIMLIACWLYPGLTP
LLKYAGETPYLINMILIFFGPIILLIILYCLLIRLIYESRKKVIAHASKT
TNIVETQDGRLEMAPSSSNLTEADIIDQPTKSKLSPTVSAVSASKKSSKR
HMKLAKSVSVLLGCYLICLTPFNLWMILDMVNKASGRISSVHLQHLYMFG
VFAGAANSCVNPFIYLSKQPGFRKRFRNILTQISNNVL Run BLAST on NCBI transcript from alignment at scaffold_64:116225..118164 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071894 ID=TCONS_00071894|Name=TCONS_00071894|organism=Clytia hemisphaerica|type=transcript|length=1940bp|location=Sequence derived from alignment at scaffold_64:116225..118164 (Clytia hemisphaerica)
AAACatatgtgattactcgaaaaggttcacgtgatttttttccaatgttA
CTtactttacaacttacagctgataaatttattagtgtcaataattcgaa
ccaatcagaaataaatgtcatgtacaagcacataaaaatttcgagaaaaa
cgtGATTTGTCATCAGACTTTAACCTGTGTATTCGGAGACACTATATTGA
CGGTTCGCTAGTACAATATGCAAATCTAAAATACAATCTGTAAATCgggt
ttattgattttcttcgAAAGGTGCACGCAATCAAAGAACATTATTACTTA
TCTGAGTCAATATATTCCGAAAACGTTTCCGAAAACCCGGTTGTTTTGAC
AAATAAATGAACGGATTAACACAGCTGTTAGCTGCTCCTGCAAAAACTCC
AAACATGTATAAATGTTGTAGGTGTACCGAACTTATACGTCCACTTGCTT
TGTTGACCATATCCAGTATCATCCAAAGATTGAACGGTGTAAGACAAATC
AAATAGCATCCTAAAAGCACTGATACTGACTTAGCAAGCTTCATATGtcg
tttacttgattttttgcTAGCCGAAACTGCCGAGACTGTTGGACTCAATT
TACTTTTAGTTGGTTGGTCAATTATATCAGCTTCGGTTAAATTTGAAGAA
CTCGGTGCCATTTCTAATCTACCATCTTGAGTTTCCACAATATTGGTTGT
CTTTGACGCATGCGCGATTACCTTTTTCCTACTTTCATAAATAAGTCGAA
TCAATAGACAATATAATATTATAAGGAGAATGATTGGTCCGAAGAATATC
AAAATCATATTGATAAGATACGGTGTTTCGCCGGCATATTTGAGTAACGG
TGTCAACCCAGGGTACAACCAACACGCTATAAGCATGATAACTATCTTCC
GTTCTGTCATGATAAAGTGATATGATGCAtatctggtcattaaaatgtaC
CTATCCAGAGCAATTACCACTAGGGTTAAGACTGATGAACCAGACATGAG
CAACGCAAAATAAGCTCTTGCAAAGTCTATTGAGCAACTAAGTCGAGCAT
TTGGTGATAACGTTTGGTAAGCGTTTATAGGGAATACAACCAGACCAGTC
AATGCATCTGAAATGGCCAAAGATGAGAGAATTTTATTGGATTTGTTTCG
TTGGTCAGGCATCCAGAGGATATAGAANCAAAAACTCCAAACATGTATAA
ATGTTGTAGGTGTACCGAACTTATACGTCCACTTGCTTTGTTGACCATAT
CCAGTATCATCCAAAGATTGAACGGTGTAAGACAAATCAAATAGCATCCT
AAAAGCACTGATACTGACTTAGCAAGCTTCATATGtcgtttacttgattt
tttgcTAGCCGAAACTGCCGAGACTGTTGGACTCAATTTACTTTTAGTTG
GTTGGTCAATTATATCAGCTTCGGTTAAATTTGAAGAACTCGGTGCCATT
TCTAATCTACCATCTTGAGTTTCCACAATATTGGTTGTCTTTGACGCATG
CGCGATTACCTTTTTCCTACTTTCATAAATAAGTCGAATCAATAGACAAT
ACAATATTATAAGGAGAATGATTGGTCCGAAGAATATCAAAATCATATTG
ATAAGATACGGTGTTTCGCCGGCATATTTGAGTAATGGTGTCAACCCAGG
GTACAACCAACACGCTATAAGCATGATAACTATCTTCCGTTCTGTCATGA
TAAAGTGGTATGATGCAtatctggtcattaaaatgtaCCTATCCAGAGCA
ATTACCACTAGGGTTAAGACTGATGAACCAGACATGAGCAACGCAAAATA
AGCTCTTGCAAAGTCTATTGAGCAACTAAGTCGAGCATTTGGTGATAACG
TTTGGTAAGCGTTTATAGGGAATACAACCAGACCAGTCAATGCATCTGAA
ATGGCCAAAGATGAGAGAATTTTATTGGATTTGTTTCGTT Coding sequence (CDS) from alignment at scaffold_64:116225..118164 >TCONS_00071894 ID=TCONS_00071894|Name=TCONS_00071894|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_64:116225..118164 (Clytia hemisphaerica)
TCAAAGAACATTATTACTTATCTGAGTCAATATATTCCGAAAACGTTTCC
GAAAACCCGGTTGTTTTGACAAATAAATGAACGGATTAACACAGCTGTTA
GCTGCTCCTGCAAAAACTCCAAACATGTATAAATGTTGTAGGTGTACCGA
ACTTATACGTCCACTTGCTTTGTTGACCATATCCAGTATCATCCAAAGAT
TGAACGGTGTAAGACAAATCAAATAGCATCCTAAAAGCACTGATACTGAC
TTAGCAAGCTTCATATGtcgtttacttgattttttgcTAGCCGAAACTGC
CGAGACTGTTGGACTCAATTTACTTTTAGTTGGTTGGTCAATTATATCAG
CTTCGGTTAAATTTGAAGAACTCGGTGCCATTTCTAATCTACCATCTTGA
GTTTCCACAATATTGGTTGTCTTTGACGCATGCGCGATTACCTTTTTCCT
ACTTTCATAAATAAGTCGAATCAATAGACAATATAATATTATAAGGAGAA
TGATTGGTCCGAAGAATATCAAAATCATATTGATAAGATACGGTGTTTCG
CCGGCATATTTGAGTAACGGTGTCAACCCAGGGTACAACCAACACGCTAT
AAGCATGATAACTATCTTCCGTTCTGTCATGATAAAGTGATATGATGCAt
atctggtcattaaaatgtaCCTATCCAGAGCAATTACCACTAGGGTTAAG
ACTGATGAACCAGACATGAGCAACGCAAAATAAGCTCTTGCAAAGTCTAT
TGAGCAACTAAGTCGAGCATTTGGTGATAACGTTTGGTAAGCGTTTATAG
GGAATACAACCAGACCAGTCAATGCATCTGAAATGGCCAAAGATGAGAGA
ATTTTATTGGATTTGTTTCGTTGGTCAGGCATCCAGAGGATATAGAANCA
AAAACTCCAAACATGTATAAATGTTGTAGGTGTACCGAACTTATACGTCC
ACTTGCTTTGTTGACCATATCCAGTATCATCCAAAGATTGAACGGTGTAA
GACAAATCAAATAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071894-exon-scaffold_64-1491911889:116225..118164 | TCONS_00071894-exon-scaffold_64-1491911889:116225..118164 | Clytia hemisphaerica | exon |
| TCONS_00071894-exon-scaffold_64-1510915933:116225..118164 | TCONS_00071894-exon-scaffold_64-1510915933:116225..118164 | Clytia hemisphaerica | exon |
| TCONS_00071894-exon-scaffold_64-1575043694:116225..118164 | TCONS_00071894-exon-scaffold_64-1575043694:116225..118164 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:116225..118164 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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