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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071887 ID=TCONS_00071887|Name=TCONS_00071887|organism=Clytia hemisphaerica|type=transcript|length=363bp
TTCAGTGTCTTCTTCGAAGGTGAAGATTATTACACCAGAGTAGAGGATTT
CAATGAAGGCGATCGAGCTCTTTCCGTTATTACTGGCGAAAAGGTCGTTC
AAGTGAATCCTGAATGTCATGAAGTGACTTTGGCGAGTGGAGAAAGTATC
AAATATGGAAAGCTACTCATAGCAACAGgTGGAACTCCACGTGGGCTCAG
CGTTTTCGATACTCAAGGCGTCAAAGATAAATTAACTCTCTTCAGAAATA
TAGCAGACTTCCAGAGTTTGACATCAGCGGTGAGTGAAGCAGAGCATGTG
GCCGTTGTTGGTGGAGGTTTCTTAGGAAGTGAATTAGCATGTGCCCTCGC
CTCCCATGGTAGG Run BLAST on NCBI protein sequence of TCONS_00071887-protein >TCONS_00071887-protein ID=TCONS_00071887-protein|Name=TCONS_00071887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
FSVFFEGEDYYTRVEDFNEGDRALSVITGEKVVQVNPECHEVTLASGESI
KYGKLLIATGGTPRGLSVFDTQGVKDKLTLFRNIADFQSLTSAVSEAEHV
AVVGGGFLGSELACALASHGR Run BLAST on NCBI transcript from alignment at scaffold_64:329079..329915- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071887 ID=TCONS_00071887|Name=TCONS_00071887|organism=Clytia hemisphaerica|type=transcript|length=837bp|location=Sequence derived from alignment at scaffold_64:329079..329915- (Clytia hemisphaerica)
TTCAGTGTCTTCTTCGAAGGTGAAGATTATTACACCAGAGTAGAGGATTT
CAATGAAGGCGATCGAGCTCTTTCCGTTATTACTGGCGAAAAGGTAAACA
TATCTCAGTTTGTAAACCCTTTTACCTTCCTTTTTCATCAAGTTGGCAGT
ACGCGTCTTGTCTACTTTCATTCACCGTAGGATAACAAATCACATTTTTT
AATATTATGATTCTTTTTTTAAGGTCGTTCAAGTGAATCCTGAATGTCAT
GAAGTGACTTTGGCGAGTGGAGAAAGTATCAAATATGGAAAGCTACTCAT
AGCAACAGGTTCCCAGCATATCATGTTTCTTTGTTTCAAGCTGTGTTCTG
TTAGCGAACTTTTTGAGGTTTAACTCTTTTCTTGGTCTCTTTGATTCAAA
TTTTTGTCTAAATATTTTGCATGTTATTTTTTTCTTCCAGGTGGAACTCC
ACGTGGGCTCAGCGTTTTCGATACTCAAGGCGTCAAAGATAAATTAACTC
TCTTCAGAAATGTAAGATCTTTCTTTTTGTCTTCGAAAATCATATTATTT
GCGATTTAAGCCAGTAAGGATTTGTTTGTTTATTTACTGAATTCTCTTGG
TTACCATACAANCATTTGCGATTTAAGCCAGTAAGGATTTGTTTGTCTGT
TTACTGAATTCTCTTGGTTACCATCAGCTGTCTTTCGAAGTTTCTCTTCC
ATCTACTTTCTCTTCCTTTACAGATAGCAGACTTCCAGAGTTTGACATCA
GCGGTGAGTGAAGCAGAGCATGTGGCCGTTGTTGGTGGAGGTTTCTTAGG
AAGTGAATTAGCATGTGCCCTCGCCTCCCATGGTAGG Coding sequence (CDS) from alignment at scaffold_64:329079..329915- >TCONS_00071887 ID=TCONS_00071887|Name=TCONS_00071887|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at scaffold_64:329079..329915- (Clytia hemisphaerica)
ATAGCAGACTTCCAGAGTTTGACATCAGCGGTGAGTGAAGCAGAGCATGT
GGCCGTTGTTGGTGGAGGTTTCTTAGGAAGTGAATTAGCATGTGCCCTCG
CCTCCCATGGTAGGGTGGAACTCCACGTGGGCTCAGCGTTTTCGATACTC
AAGGCGTCAAAGATAAATTAACTCTCTTCAGAAATGTCGTTCAAGTGAAT
CCTGAATGTCATGAAGTGACTTTGGCGAGTGGAGAAAGTATCAAATATGG
AAAGCTACTCATAGCAACAGTTCAGTGTCTTCTTCGAAGGTGAAGATTAT
TACACCAGAGTAGAGGATTTCAATGAAGGCGATCGAGCTCTTTCCGTTAT
TACTGGCGAAAAGATAGCAGACTTCCAGAGTTTGACATCAGCGGTGAGTG
AAGCAGAGCATGTGGCCGTTGTTGGTGGAGGTTTCTTAGGAAGTGAATTA
GCATGTGCCCTCGCCTCCCATGGTAGGGTGGAACTCCACGTGGGCTCAGC
GTTTTCGATACTCAAGGCGTCAAAGATAAATTAACTCTCTTCAGAAATGT
CGTTCAAGTGAATCCTGAATGTCATGAAGTGACTTTGGCGAGTGGAGAAA
GTATCAAATATGGAAAGCTACTCATAGCAACAGTTCAGTGTCTTCTTCGA
AGGTGAAGATTATTACACCAGAGTAGAGGATTTCAATGAAGGCGATCGAG
CTCTTTCCGTTATTACTGGCGAAAAGATAGCAGACTTCCAGAGTTTGACA
TCAGCGGTGAGTGAAGCAGAGCATGTGGCCGTTGTTGGTGGAGGTTTCTT
AGGAAGTGAATTAGCATGTGCCCTCGCCTCCCATGGTAGGGTGGAACTCC
ACGTGGGCTCAGCGTTTTCGATACTCAAGGCGTCAAAGATAAATTAACTC
TCTTCAGAAATGTCGTTCAAGTGAATCCTGAATGTCATGAAGTGACTTTG
GCGAGTGGAGAAAGTATCAAATATGGAAAGCTACTCATAGCAACAGTTCA
GTGTCTTCTTCGAAGGTGAAGATTATTACACCAGAGTAGAGGATTTCAAT
GAAGGCGATCGAGCTCTTTCCGTTATTACTGGCGAAAAGATAGCAGACTT
CCAGAGTTTGACATCAGCGGTGAGTGAAGCAGAGCATGTGGCCGTTGTTG
GTGGAGGTTTCTTAGGAAGTGAATTAGCATGTGCCCTCGCCTCCCATGGT
AGGGTGGAACTCCACGTGGGCTCAGCGTTTTCGATACTCAAGGCGTCAAA
GATAAATTAACTCTCTTCAGAAATGTCGTTCAAGTGAATCCTGAATGTCA
TGAAGTGACTTTGGCGAGTGGAGAAAGTATCAAATATGGAAAGCTACTCA
TAGCAACAGTTCAGTGTCTTCTTCGAAGGTGAAGATTATTACACCAGAGT
AGAGGATTTCAATGAAGGCGATCGAGCTCTTTCCGTTATTACTGGCGAAA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071887-exon-scaffold_64-1575043694:329823..329915 | TCONS_00071887-exon-scaffold_64-1575043694:329823..329915 | Clytia hemisphaerica | exon |
| TCONS_00071887-exon-scaffold_64-1575043694:329608..329692 | TCONS_00071887-exon-scaffold_64-1575043694:329608..329692 | Clytia hemisphaerica | exon |
| TCONS_00071887-exon-scaffold_64-1575043694:329405..329475 | TCONS_00071887-exon-scaffold_64-1575043694:329405..329475 | Clytia hemisphaerica | exon |
| TCONS_00071887-exon-scaffold_64-1575043694:329079..329192 | TCONS_00071887-exon-scaffold_64-1575043694:329079..329192 | Clytia hemisphaerica | exon |
| TCONS_00071887-exon-scaffold_64-1510915933:329823..329915 | TCONS_00071887-exon-scaffold_64-1510915933:329823..329915 | Clytia hemisphaerica | exon |
| TCONS_00071887-exon-scaffold_64-1510915933:329608..329692 | TCONS_00071887-exon-scaffold_64-1510915933:329608..329692 | Clytia hemisphaerica | exon |
| TCONS_00071887-exon-scaffold_64-1510915933:329405..329475 | TCONS_00071887-exon-scaffold_64-1510915933:329405..329475 | Clytia hemisphaerica | exon |
| TCONS_00071887-exon-scaffold_64-1510915933:329079..329192 | TCONS_00071887-exon-scaffold_64-1510915933:329079..329192 | Clytia hemisphaerica | exon |
| TCONS_00071887-exon-scaffold_64-1491911889:329823..329915 | TCONS_00071887-exon-scaffold_64-1491911889:329823..329915 | Clytia hemisphaerica | exon |
| TCONS_00071887-exon-scaffold_64-1491911889:329608..329692 | TCONS_00071887-exon-scaffold_64-1491911889:329608..329692 | Clytia hemisphaerica | exon |
| TCONS_00071887-exon-scaffold_64-1491911889:329405..329475 | TCONS_00071887-exon-scaffold_64-1491911889:329405..329475 | Clytia hemisphaerica | exon |
| TCONS_00071887-exon-scaffold_64-1491911889:329079..329192 | TCONS_00071887-exon-scaffold_64-1491911889:329079..329192 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:329079..329915 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023753 | FAD/NAD-binding_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
BLAST of TCONS_00071887 vs. Swiss-Prot (Human)
Match: AIFM1 (Apoptosis-inducing factor 1, mitochondrial OS=Homo sapiens GN=AIFM1 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.457e-22 Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 1
Query: 4 SVFFEGEDYYTRVEDFNEGDRA-LSVITGEKVVQVNPECHEVTLASGESIKYGKLLIATGGTPRGLSVFDTQG--VKDKLTLFRNIADFQSLTXXXXXXXXXXXXXXXFLGSELACALASHGR 363
S++F+ +Y +D + ++V+TG+KVVQ++ + V L G I Y K LIATGGTPR LS D G VK + TLFR I DF+SL E + + ++GGGFLGSELACAL R
Sbjct: 202 SIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKAR 324
The following BLAST results are available for this feature:
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