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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071842 ID=TCONS_00071842|Name=TCONS_00071842|organism=Clytia hemisphaerica|type=transcript|length=2348bp
TCTTAACATCTCTCTTATGATGGGaGATAAGataaccaaaacaaaaaatg
aatataTTTCGCCGTCGTAATTTCTTGAGTAGAACAGTACGACGGTCAGT
GGTTATATTGCTTTTTCTGTCACTTCTTGGTACTGTTTTCCTATACACAA
TATGGCGAGATTCGTCTCCAGATGATACCATTGTGGACCAGAAAAACACC
TTCATATTTGCCTTACAGCAGAACAAAATTGATGTTGGGAATTTTCGTGA
AAAACGATTGGCTGATAACCGGAATCAACCTTTTAATAGAGAAATCATAG
AACGGGCGGCCCGTAAAGCACCCATTTCAAGTACAACCACTAAAGAAATA
ACCGCCCCACCACCCAAACCTACCAAGGAAATCAAACGCCAAGAAGTTGT
TATACAATATAAGTTGAATCGCAATTCAGAATTGAATTTTCCAAGTATTT
TCAACTATCTACCACATTTGATTCAATTTGCTAATGATTTAGAACCGATT
CGCTTACACAACAAATCAATAGAAACAGCTCATCGAAAACCTAAATTTGT
TTTTGGTATTCCCACCGTCAAAAGGTTAAAGAAAAGCTATTTAGTGGACA
CTATACGTTCAATTTTAGCAGGAATGAAACTTTCTGAACGAAGCAAAATA
GTCATTGTTGTATACATTGGAGAGAAAGACCAATCACATATTAAATATGT
CACCGATGATATTGTTGGGAATTTCACCTCTGAAGTCCAACAAGGTCTCG
TTGAGGTCATAGCTCCACCTGAGCATTACTATCCTGATTTGGATGACCTA
CCATTGTCTTTTGGTGACCCTAAAGAGCGTGTGAAATGGAGGTCCAAACA
GAATTTAGATTATTCATACATGATGATGTATGCTCAACAGAAGGCTGAAT
ATTACCTACAGTTAGAGGATGACGTCATTGCTTCTAAAGGGTACTTacag
aaaattgaaatattcatgAACAGTCAGAAACATAAGCCTTGGTTCATGCT
TGAATTTTGTCGGTTGGGATTTATTGGGAAGCTATTTCATTCTCAACAGC
TATCGAACCTGATTGAattctttttgatgttttataaACAGAAACCGAAT
GATTGGTTGTTGGACCATTACATTGAAGTACTCGTTTGTAGCCCTGAGAA
AGGTCGTAAAGAATGCAACGCAGAGAAGAAGAAGGTCAGAATGAACTCTA
AGCCATCTTTATTCCAACATGTAGGGAAACATTCATCGCTTAAAGGCAAG
GTTCAAAAACTTATCGATAGAGCTTTCCCTGGTGCTGCTAAAAGGAAGGA
AAAAGGCGAAGACCAGTTCTTTCCACATGACAATATCAAAGCCACCATAC
AAACAAATGCTGTTGAATATTCTAAATTCAAGATCAAATCAGCCTACGAA
GGCCATAATTTGGCTTGGATTAAAACACCTAAAAACAGTACATTTATATC
ATTTCATTTCGATACGCCTgttaaaattgagaaatttttatTCAGGACAG
GAAACAAAGATCATCCAGGTGATGTGTTGAAATATGGAATGGTTGAAGTA
CAAACTGCCCATACTGTTAAACATCAAGCTGAGAATCATAAAGACATTAA
AGTGGATGATAACAATGACCCTTCAAAGACGGGCTATGTTTCTGTTGGAA
CTTTCAATGATAAAGGACTAGCTTCGGGGACTGTCCCAAAATCATTAGGT
GATATATCAGAATTGAGGCTACGTGTGACTTTAGATGTTATGACTAATTG
GGTGATTATTAACGAATTCATGGTATGTTGATGTACTTtagatctttttt
tttctagagAAATTCGAATTATTTTTGTAATCTCTGTCTTCATCTGGAGT
GTCACTCGAAGTGTCCTATAAGATGTTCCTCGTCGAAAAAATCTTCTGTA
CATAGTTACTCTTTTGGGAAATCTTTTTACGGGGAACCCtgtagtttttg
aaatttagtgATTTTGAGCGACCCAGTCATACTTAAGCCTTAAAGAGGGA
CTCTGACAAGCTACATTACCCCCTTAACTTTTTTCGCCTTAGTGACACCC
AGGGATCACTTATCCCCCGATAAATAATATTTCTAGAAGCAAGACCTACG
AGTTCGTGATCCAAAAGGTGGCTGAAAACCTGAATTACCAAACCTTTATA
GAAGagatatttatatttttgtttatattattgTGATGcttatgaaaatt
tatttatatttcatttttcttaacttttttgagagaaGCTGTCCTCAAAA
TATTCTTGCGTTTACATTTTAACGCCATATGGAATTGAACGAATATTGTA
GTTTCTATGACATTGAAATGTGTGGTAAGAGTTAAATGTTTGGAAAAA Run BLAST on NCBI protein sequence of TCONS_00071842-protein >TCONS_00071842-protein ID=TCONS_00071842-protein|Name=TCONS_00071842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=577bp
MNIFRRRNFLSRTVRRSVVILLFLSLLGTVFLYTIWRDSSPDDTIVDQKN
TFIFALQQNKIDVGNFREKRLADNRNQPFNREIIERAARKAPISSTTTKE
ITAPPPKPTKEIKRQEVVIQYKLNRNSELNFPSIFNYLPHLIQFANDLEP
IRLHNKSIETAHRKPKFVFGIPTVKRLKKSYLVDTIRSILAGMKLSERSK
IVIVVYIGEKDQSHIKYVTDDIVGNFTSEVQQGLVEVIAPPEHYYPDLDD
LPLSFGDPKERVKWRSKQNLDYSYMMMYAQQKAEYYLQLEDDVIASKGYL
QKIEIFMNSQKHKPWFMLEFCRLGFIGKLFHSQQLSNLIEFFLMFYKQKP
NDWLLDHYIEVLVCSPEKGRKECNAEKKKVRMNSKPSLFQHVGKHSSLKG
KVQKLIDRAFPGAAKRKEKGEDQFFPHDNIKATIQTNAVEYSKFKIKSAY
EGHNLAWIKTPKNSTFISFHFDTPVKIEKFLFRTGNKDHPGDVLKYGMVE
VQTAHTVKHQAENHKDIKVDDNNDPSKTGYVSVGTFNDKGLASGTVPKSL
GDISELRLRVTLDVMTNWVIINEFMVC Run BLAST on NCBI transcript from alignment at scaffold_64:164626..174851+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071842 ID=TCONS_00071842|Name=TCONS_00071842|organism=Clytia hemisphaerica|type=transcript|length=10226bp|location=Sequence derived from alignment at scaffold_64:164626..174851+ (Clytia hemisphaerica)
TCTTAACATCTCTCTTATGATGGGGTGAGTAATACGTTTATTATTTGATG
TCAAACGTGGTATTGACATTATTATAtccaatttttacaaaaatgctttc
tttttcctCACTCTGATCTGATTTACTCGCTGATAATTGATATTACAACG
TTTCAAAAAGATGCTTTCAGTTCTAACAAGATTTTCATCAAGAGCTGTTT
ATATGTATGAGGTAGAAAAGAGTTGCGTTCAGCTAAACTGATATACTAAC
TGATTTATAATGTTTATGTTATTTCTTCGACACTGAAGTGTTTCAAAATA
CTGTAAACGACCTCGAAATTTGTCCTCTTTAAAGGCTTGTTATggatttt
tgtatttgaataCATAATATTTTCTAACATTGATATATGAAACCCTCTGA
ACATAACAACTTTGAAGTTCGAATATCATTCGGATATTGCTATGAGATTT
CTTATGAACAATATGGAAGTTGAATTTGTATatatgtctgtatgtctgta
AGCAAACGTACTATAGTTAGATTAGATTGTTTTACAGTTGGGTTTACACC
CCGGTTTACAGTAAACGTTGAAGTTGATGAATGATAAAACTGTTTTTCGA
TTCAAacacgtttttctataagaacatccaatcgCGTATGATTTAAACTG
TCTATTGTGACACATCAAAGGCTTACCATCATTCCTCACTGATGGGAAAT
ccgcccgctcctttagagcttcagcgtgggcGACCGCCAaaccgccatcg
gaatatctgATAAATTCCTAACCTAAGTTTGAAGTTGTGTGTGCTGGTTG
CgtgttttttcacacaattcATAGTATTGAAAGTAACATTGACCATTAGA
TTTTAAAAGATTAAGAAAGCGCTATATCCAGTCCCtgtctgatttctttt
tttcgtttttacgACTTGGAACTATACTCTCAAAGATGAAAGGCCTGTCA
TGGTTAGTGAAACTTCCCGTGCTCATTTTAGCTCAAATTCAACTCGTTCA
TTGATGCACACTGGGACCTTCGTTTTCGTATCCTAGTAAGGAACCTTAGA
ATCATCTCTTCTTTATTCAACATGTAGACCGGggccacttaaagcttttt
gataaactggatggcgctgataaaTGGCTCGCTGATATGATATGGCAGAT
ATTTTTCGACTTTGCCTGAGCACGTAGCAGGAACATAGTAAATCCATACC
ACTAGATCCAGGTTCTTTTTTCGACGAAGACAAACAGAAAACCATGACCA
ATTGACCCTGATtgaccaatttttttcaaattttggtggtattttcatgt
tttttttaagtttcatatacttttgtgtttttatataatttttgaagacG
AAAGTGAACAATTCTAAGATTGTGATATCCTCTAGTCCACTTCACTGGAC
TTAGCGCCATCATAATCATCAGAAAACAAAGTTCAGTTAGAAGTAGACAT
ATGTATATGTTGattgatgaatttcaaaatattgcaaTATTAGTATTATC
GAAAAAGGACGTCATACTTGTTATACGATACGTTTTACTgtatatttttc
tttgaaatgagTTATTATTTCGGATATGCTGGCTGAATCATAGTTTATGA
TATAAAGCCTTAGTTAAATGTAATAAGACGCTTGCTAAGAGCTACGGAAG
TTTTTTCATCGAataaatgatgaaaatatcTATCGGGTGGTTGTATTGCT
TGAAGCAGTTTGAAGTCATGTTTATGGATGTTAGCCACGATTCCTTTTGA
ATTAGTATTCAGTTGAACCAAGAAACTTATTAAAACaaatcagaggaatg
taaagagatggaaaaacagcttttctgattactcaaagttcaacgatcac
ttctattcatcaaatgaaagtccagaaaagacggctcgccatacaaatcg
gacggtttctacatgatttgacgataaaaacgaaaatttgtttttccttt
tttgccgattactagttcaatttttaaaaataaggagcaatatttttacc
aatgtatagcaaaagaaattcttgacgcaatgatattaaattggttcttg
taaaactgtcagaagtcgagtaaaatcaagatgaagttatgattttctcg
agctctagctttccatattatggtgcggtcatgatgcggttatatcagta
gaatcgctagggaattctgagcaagaagatataggtaccttttcgtatag
gagaggtgtacccaaaatataagccctaaaagtttgcgcataatcaggct
tgaaacaaaagaattttgtcacaacaccctaattatgcagattttttata
gcgacaacaaaagaaacctatttgcTCGACATAAattcccttaagggcaa
gagacctggtatatgacgagccgtttttccattgttttcaagaagctgtt
tttccatctctttacattcctctgaacCGAACAGATCGTTGTTTTGCCGG
TGGTTAATTGAAGAGCCGAGGTGAACTTTGAAGGCGCGTTGCCTCGTTAc
acgtttttattttatttatttattttttttttNccttcagatgttcttaa
ctttttgagctttaaaagCCTAAACTGTTCTTAAATTCTTCTTGATTTAA
ACagttttaagtatttttgtgtaTTCTCCTAAGGAATCGGATAATAAagc
cataaaatgttcttaacttgatcTTAATATTTAGCAATGAGCTATTCCAG
AAAAGAATTGTACCCCTATGTTTAGGAGGTCAGTTTTGGAAAAAGTGACC
TCCTGGATTTTTACTCAATTTCCCAGGACCCCGTtgcatttttttctcaa
tttttggacaaccctggatttttacactcgaaaaaacAGACCACCCTGGA
AgacacacctcctcaacataggtgGTACTGgctttttctggaatagccca
atggaagccttatgttcttatatagattgttttaataaaaaatttgtAGT
TTTACACAGAAATCACTGCGTTCAAAAAACATTGCCGAAATGACTGCCCT
TCAATTTTAAATTGATGTTTCGAAACGTTTctttgagattcagagaaaga
TTTGTCATTCTGCCAAATATTGAAACTTGCGTTTTTAATaattatacacc
ttttcgaccgtagtcgcgcggtcaggccaGTCGTGCTGCACTTAGTTATT
TAGGTatatccaatccttttttgacacatctattgtctataggtgcgaaa
aaaagactgggattgttttagtgggataaagcggacaaaacaatgcccgc
gcggcaattggcggctacggtcgaaaaggtgtattaataGTAAACTCTCT
CTATACACTCTAATAACAAACAGTTACAAtctgaaaattgacttttttaa
gACAATTTCAGATACCGTTTTTAATCTTTTATAAACGTGAACTGTTAAAA
GCATGGTCTTGATAACAAATCTAACTTAGTCGGATCTTTTTCTATGTata
tacaaaaaatctttttatctgATCCGATTTTGTATCTTTATCACGCTGAG
TCATTTAACGAACCTTACGTTTTTGGTTCAGTttcgaatgttattttttt
gacaTCAACATGATCAGACATGCATGGCTCTTATGTGCCATCCAAACTAA
TAAAGGGTTGAAGTATTAAAACTAAAGGCTTGAACTGTTATTACAAGCTT
CCTGATATATTTGGGTTAAGTCTCTTAAAGGAATTAATTTTGtcgagaac
taatttttgtgAGCAGCAAAAATCctagaaatttttaattttggaaaaat
ttattttaaattttggagaGAACTGATTTTCAGCGAATGACATATAGACC
ATcggccgaggtagtgaattgtgtcacttcgtagggcaccccttagatca
ggacacatttttgatattatgcccctaatagggtgtagaattgacaattg
cccttcgaatctcctgcagttttcgagtgaatcgatttttagttaatcga
gaGAACTTATCAAGGATCAAGGGTCCCTctccctttactaacggtttttt
taagtttgaaaatcaaatatctgaggctaccaacggattcagcgtgaaaa
gtagacaaagaaaatggggttatttgttcagtttcgaccacctggtgccg
agaaatggcatttttaaggcgataaatcgacgtttttggctttttccgat
gacgtcagcatttttcttggagcattttcagaaaaaaatcattctcgTGG
CTGGATAGCCCAGAATTattagtatccaaaaatggtatagtttgtcagtt
tttgatggctagatctcgagatattttggtttaaatattgaaaattatcg
atattttttgctgagtcagcagcttttcagcatatttacccaccttaaaa
attaaatatctcaagatcagaacatcgaaagttaacaaaccataccattt
tcggatactactaattcagggctatccagctgtggaaatggcttttttct
gaaaatgctcccaGAAAAATGcggacgtcatcggaaaacgtcaaaaacgt
cgatttatcgccttaaaaatgtcatttctcggcaccaggtggtcgaaact
taacaaataacccatGAGATAGTCTAAactctgtctcaatataatctgga
TCTCGCGGATAAGGCCTTTCTAAATTTCTATTGGATCGGAAATCCgggaa
atttaatccccgtgaaATTTTGTCATGTTAAAGTATATCGAATCTTCGAT
ATTGCTGTATAACGCTTTTAATAAGCAGTTCAAGTCGATTATTACGAGAA
CGCCCTGAATGCTAGCAGTgaataataatgaaaatggcCATTTCACCCTA
GTGAAGAATTCTGTGCATCTCAGtattgtctcttattatctgcAAGTTCC
ATTTTTCAGACCGTATGATTTTTCTATGCTACCACCTAAAAGTTACGTCG
GTACAATACGACAAAAACTTGCACCACGCCACATttgtaaaatatgaaat
tttataCCTTAACTGCTGGTCACTTACAAATAATCAGTTGTTCCAAAAGT
GACGCAATGATATCAGGATATCCTACCGTAGTCCTACATATtgataaatg
aatgaatgaatgaatgaatgaaggaAACTTCcgaaatatttttgcctaac
tCTTTTTCAAAACCAAGATAttcaagtttcaagtttttgacttttagtaa
GAAAAACAATTCTAACGTAAGAATCGTGTAGGATAGAAATTCCAAATTGC
TTCCTCTCGACTtggaaaaaacatttaaaagttTAGCTTAGGACAATGGA
AGTAATCTTAAGCAAGGCAAGGTTTCAAACCATCTGACAATTATCTCTTT
AATGCTGGTAAAAAATGCTTGCCAGAAAAAGAAATCTTGGCATGGATTCT
CCGCGTTCACGGAGGGACTTCATCATAATCTTACGTGAATACTTTTTTTA
ATATGTTACTCATTCATAAGCGGAAGGTCGTTGAGAAATTTTGACATTAT
GCCCTTGAAAAAGACTTGAGTTTTGTTTCCTTCCAAGTTCTTGAAAGATG
TAGGCAGTAATTAGTATAGCTAAGTTGAGTTTTAAACTAGTTCAACATAA
GACGATATCatctcaaatatttttattcaaaatcaaatattgattttctc
aGAAGAATTAAGAAGAAGTGTTTcctcttgaaatttttcatcattttaca
tTGCGTTGTTATTGTGCCTTTAAAGTCGGGTTTTTACTTTCATCAGTGCG
AGCATGGATCAGTGAGGGCTAATTTTCATCTCCTCCTTTACATATTCATG
ATAGTGGTACATATCACTATATATTGGACATACAGTAAACAATGCAGGTG
TAAACAAGTAGACCTTTACTTTAAACTTTTATGAATTGATGACTAAAAAC
GCtatccatgatatgcaccactgaaAGTGGcttcaaagaattttcaaaat
tttccacccaataagtcactttttctattgtttaagtgacgtattgggtg
gaaagtTTTAAGAATTCTCACAAAAAACGTTACAGATTttatataaatta
aatttccCTCTGTATAACAACGGACATTGACGCCTGAATTTTCAAAAGCT
GGATTTTTGTTATAAGTTGAATGGACtattttagaatattgtttgtttAG
ATAATTTTACTGCTATATAGATACATTCGTATAAAGAGTTCCTTATCCCT
TCTTTGGAACCCACTGGTATACTTACATTGTTGGGTATGGAAATAAGTAT
ATAattataaatttgatttttctttactttagaGATAAGataaccaaaac
aaaaaatgaatataTTTCGCCGTCGTAATTTCTTGAGTAGAACAGTACGA
CGGTCAGTGGTTATATTGCTTTTTCTGTCACTTCTTGGTACTGTTTTCCT
ATACACAATATGGCGAGATTCGTCTCCAGATGATACCATTGTGGACCAGA
AAAACACCTTCATATTTGCCTTACAGCAGAACAAAATTGATGTTGGGAAT
TTTCGTGAAAAACGATTGGCTGATAACCGGAATCAACCTTTTAATAGAGA
AATCATAGAACGGGCGGCCCGTAAAGCACCCATTTCNGATTTTTCTATGC
TACCACCTAAAAGTTACGTCGGTACAATACGACAAAAACTTGCACCACGC
CACATttgtaaaatatgaaattttataCCTTAACTGCTGGTCACTTACAA
ATAATCAGTTGTTCCAAAAGTGACGCAATGATATCAGGATATCCTACCGT
AGTCCTACATATtgataaatgaatgaatgaatgaatgaatgaaggaAACT
TCcgaaatatttttgcctaactCTTTTTCAAAACCAAGATAttcaagttt
caagtttttgacttttagtaaGAAAAACAATTCTAACGTAAGAATCGTGT
AGGATAGAAATTCCAAATTGCTTCCTCTCGACTtggaaaaaacatttaaa
agttTAGCTTAGGACAATGGAAGTAATCTTAAGCAAGGCAAGGTTTCAAA
CCATCTGACAATTATCTCTTTAATGCTGGTAAAAAATGCTTGCCAGAAAA
AGAAATCTTGGCATGGATTCTCCGCGTTCACGGAGGGACTTCATCATAAT
CTTACGTGAATACTTTTTTTAATATGTTACTCATTCATAAGCGGAAGGTC
GTTGAGAAATTTTGACATTATGCCCTTGAAAAAGACTTGAGTTTTGTTTC
CTTCCAAGTTCTTGAAAGATGTAGGCAGTAATTAGTATAGCTAAGTTGAG
TTTTAAACTAGTTCAACATAAGACGATATCatctcaaatatttttattca
aaatcaaatattgattttctcaGAAGAATTAAGAAGAAGTGTTTcctctt
gaaatttttcatcattttacatTGCGTTGTTATTGTGCCTTTAAAGTCGG
GTTTTTACTTTCATCAGTGCGAGCATGGATCAGTGAGGGCTAATTTTCAT
CTCCTCCTTTACATATTCATGATAGTGGTACATATCACTATATATTGGAC
ATACAGTAAACAATGCAGGTGTAAACAAGTAGACCTTTACTTTAAACTTT
TATGAATTGATGACTAAAAACGCtatccatgatatgcaccactgaaAGTG
Gcttcaaagaattttcaaaattttccacccaataagtcactttttctatt
gtttaagtgacgtattgggtggaaagtTTTAAGAATTCTCACAAAAAACG
TTACAGATTttatataaattaaatttcctcTGTATAACAACGGACATTGA
CGCCTGAATTTTCAAAAGCTGGATTTTTGTTATAAGTTGAATGGACtatt
ttagaatattgtttgtttAGATAATTTTACTGCTATATAGATACATTCGT
ATAAAGAGTTCCTTATCCCTTCTTTGGAACCCACTGGTATACTTACATTG
TTGGGTATGGAAATAAGTATATAattataaatttgatttttctttacttt
agaGATAAGataaccaaaacaaaaaatgaatataTTTCGCCGTCGTAATT
TCTTGAGTAGAACAGTACGACGGTCAGTGGTTATATTGCTTTTTCTGTCA
CTTCTTGGTACTGTTTTCCTATACACAATATGGCGAGATTCGTCTCCAGA
TGATACCATTGTGGACCAGAAAAACACCTTCATATTTGCCTTACAGCAGA
ACAAAATTGATGTTGGGAATTTTCGTGAAAAACGATTGGCTGATAACCGG
AATCAACCTTTTAATAGAGAAATCATAGAACGGGCGGCCCGTAAAGCACC
CATTTCAAGTACAACCACTAAAGAAATAACCGCCCCACCACCCAAACCTA
CCAAGGAAATCAAACGCCAAGAAGTTGTTATACAATATAAGTTGAATCGC
AATTCAGAATTGAATTTTCCAAGTATTTTCAACTATCTACCACATTTGAT
TCAATTTGCTAATGATTTAGAACCGATTCGCTTACACAACAAATCAATAG
AAACAGCTCATCGAAAACCTAAATTTGTTTTTGGTATTCCCACCGTCAAA
AGGTTAAAGAAAAGCTATTTAGTGGACACTATACGTTCAATTTTAGCAGG
AATGAAACTTTCTGAACGAAGCAAAATAGTCATTGTTGTATACATTGGAG
AGAAAGACCAATCACATATTAAATATGTCACCGATGATATTGTTGGGAAT
TTCACCTCTGAAGTCCAACAAGGTCTCGTTGAGGTCATAGCTCCACCTGA
GCATTACTATCCTGATTTGGATGACCTACCATTGTCTTTTGGTGACCCTA
AAGAGCGTGTGAAATGGAGGTCCAAACAGAATTTAGATTATTCATACATG
ATGATGTATGCTCAACAGAAGGCTGAATATTACCTACAGTTAGAGGATGA
CGTCATTGCTTCTAAAGGGTACTTacagaaaattgaaatattcatgAACA
GTCAGAAACATAAGCCTTGGTTCATGCTTGAATTTTGTCGGTTGGGATTT
ATTGGGAAGCTATTTCATTCTCAACAGCTATCGAACCTGATTGAattctt
tttgatgttttataaACAGAAACCGAATGATTGGTTGTTGGACCATTACA
TTGAAGTACTCGTTTGTAGCCCTGAGAAAGGTCGTAAAGAATGCAACGCA
GAGAAGAAGAAGGTCAGAATGAACTCTAAGCCATCTTTATTCCAACATGT
AGGGAAACATTCATCGCTTAAAGGCAAGGTTCAAAAACTTATCGATAGAG
CTTTCCCTGGTGCTGCTAAAAGGAAGGAAAAAGGCGAAGACCAGTTCTTT
CCACATGACAATATCAAAGCCACCATACAAACAAATGCTGTTGAATATTC
TAAATTCAAGATCAAATCAGCCTACGAAGGCCATAATTTGGCTTGGATTA
AAACACCTAAAAACAGTACATTTATATCATTTCATTTCGATACGCCTgtt
aaaattgagaaatttttatTCAGGACAGGAAACAAAGATCATCCAGGTGA
TGTGTTGAAATATGGAATGGTTGAAGTACAAACTGCCCATACTGTTAAAC
ATCAAGCTGAGAATCATAAAGACATTAAAGTGGATGATAACAATGACCCT
TCAAAGACGGGCTATGTTTCTGTTGGAACTTTCAATGATAAAGGACTAGC
TTCGGGGACTGTCCCAAAATCATTAGGTGATATATCAGAATTGAGGCTAC
GTGTGACTTTAGATGTTATGACTAATTGGGTGATTATTAACGAATTCATG
GTATGTTGATGTACTTtagatctttttttttctagagAAATTCGAATTAT
TTTTGTAATCTCTGTCTTCATCTGGAGTGTCACTCGAAGTGTCCTATAAG
ATGTTCCTCGTCGAAAAAATCTTCTGTACATAGTTACTCTTTTGGGAAAT
CTTTTTACGGGGAACCCtgtagtttttgaaatttagtgATTTTGAGCGAC
CCAGTCATACTTAAGCCTTAAAGAGGGACTCTGACAAGCTACATTACCCC
CTTAACTTTTTTCGCCTTAGTGACACCCAGGGATCACTTATCCCCCGATA
AATAATATTTCTAGAAGCAAGACCTACGAGTTCGTGATCCAAAAGGTGGC
TGAAAACCTGAATTACCAAACCTTTATAGAAGagatatttatatttttgt
ttatattattgTGATGcttatgaaaatttatttatatttcatttttctta
acttttttgagagaaGCTGTCCTCAAAATATTCTTGCGTTTACATTTTAA
CGCCATATGGAATTGAACGAATATTGTAGTTTCTATGACATTGAAATGTG
TGGTAAGAGTTAAATGTTTGGAAAAA Coding sequence (CDS) from alignment at scaffold_64:164626..174851+ >TCONS_00071842 ID=TCONS_00071842|Name=TCONS_00071842|organism=Clytia hemisphaerica|type=CDS|length=1734bp|location=Sequence derived from alignment at scaffold_64:164626..174851+ (Clytia hemisphaerica)
atgaatataTTTCGCCGTCGTAATTTCTTGAGTAGAACAGTACGACGGTC
AGTGGTTATATTGCTTTTTCTGTCACTTCTTGGTACTGTTTTCCTATACA
CAATATGGCGAGATTCGTCTCCAGATGATACCATTGTGGACCAGAAAAAC
ACCTTCATATTTGCCTTACAGCAGAACAAAATTGATGTTGGGAATTTTCG
TGAAAAACGATTGGCTGATAACCGGAATCAACCTTTTAATAGAGAAATCA
TAGAACGGGCGGCCCGTAAAGCACCCATTTCAAGTACAACCACTAAAGAA
ATAACCGCCCCACCACCCAAACCTACCAAGGAAATCAAACGCCAAGAAGT
TGTTATACAATATAAGTTGAATCGCAATTCAGAATTGAATTTTCCAAGTA
TTTTCAACTATCTACCACATTTGATTCAATTTGCTAATGATTTAGAACCG
ATTCGCTTACACAACAAATCAATAGAAACAGCTCATCGAAAACCTAAATT
TGTTTTTGGTATTCCCACCGTCAAAAGGTTAAAGAAAAGCTATTTAGTGG
ACACTATACGTTCAATTTTAGCAGGAATGAAACTTTCTGAACGAAGCAAA
ATAGTCATTGTTGTATACATTGGAGAGAAAGACCAATCACATATTAAATA
TGTCACCGATGATATTGTTGGGAATTTCACCTCTGAAGTCCAACAAGGTC
TCGTTGAGGTCATAGCTCCACCTGAGCATTACTATCCTGATTTGGATGAC
CTACCATTGTCTTTTGGTGACCCTAAAGAGCGTGTGAAATGGAGGTCCAA
ACAGAATTTAGATTATTCATACATGATGATGTATGCTCAACAGAAGGCTG
AATATTACCTACAGTTAGAGGATGACGTCATTGCTTCTAAAGGGTACTTa
cagaaaattgaaatattcatgAACAGTCAGAAACATAAGCCTTGGTTCAT
GCTTGAATTTTGTCGGTTGGGATTTATTGGGAAGCTATTTCATTCTCAAC
AGCTATCGAACCTGATTGAattctttttgatgttttataaACAGAAACCG
AATGATTGGTTGTTGGACCATTACATTGAAGTACTCGTTTGTAGCCCTGA
GAAAGGTCGTAAAGAATGCAACGCAGAGAAGAAGAAGGTCAGAATGAACT
CTAAGCCATCTTTATTCCAACATGTAGGGAAACATTCATCGCTTAAAGGC
AAGGTTCAAAAACTTATCGATAGAGCTTTCCCTGGTGCTGCTAAAAGGAA
GGAAAAAGGCGAAGACCAGTTCTTTCCACATGACAATATCAAAGCCACCA
TACAAACAAATGCTGTTGAATATTCTAAATTCAAGATCAAATCAGCCTAC
GAAGGCCATAATTTGGCTTGGATTAAAACACCTAAAAACAGTACATTTAT
ATCATTTCATTTCGATACGCCTgttaaaattgagaaatttttatTCAGGA
CAGGAAACAAAGATCATCCAGGTGATGTGTTGAAATATGGAATGGTTGAA
GTACAAACTGCCCATACTGTTAAACATCAAGCTGAGAATCATAAAGACAT
TAAAGTGGATGATAACAATGACCCTTCAAAGACGGGCTATGTTTCTGTTG
GAACTTTCAATGATAAAGGACTAGCTTCGGGGACTGTCCCAAAATCATTA
GGTGATATATCAGAATTGAGGCTACGTGTGACTTTAGATGTTATGACTAA
TTGGGTGATTATTAACGAATTCATGGTATGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071842-exon-scaffold_64-1491911889:164626..164649 | TCONS_00071842-exon-scaffold_64-1491911889:164626..164649 | Clytia hemisphaerica | exon |
| TCONS_00071842-exon-scaffold_64-1510915933:164626..164649 | TCONS_00071842-exon-scaffold_64-1510915933:164626..164649 | Clytia hemisphaerica | exon |
| TCONS_00071842-exon-scaffold_64-1575043694:164626..164649 | TCONS_00071842-exon-scaffold_64-1575043694:164626..164649 | Clytia hemisphaerica | exon |
| TCONS_00071842-exon-scaffold_64-1491911889:172528..174851 | TCONS_00071842-exon-scaffold_64-1491911889:172528..174851 | Clytia hemisphaerica | exon |
| TCONS_00071842-exon-scaffold_64-1510915933:172528..174851 | TCONS_00071842-exon-scaffold_64-1510915933:172528..174851 | Clytia hemisphaerica | exon |
| TCONS_00071842-exon-scaffold_64-1575043694:172528..174851 | TCONS_00071842-exon-scaffold_64-1575043694:172528..174851 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:164626..174851 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006759 | Glyco_transf_54 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016758 | transferase activity, transferring hexosyl groups |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0016758 |
transferase activity, transferring hexosyl groups |
Blast
BLAST of TCONS_00071842 vs. Swiss-Prot (Human)
Match: MGT4B (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B OS=Homo sapiens GN=MGAT4B PE=1 SV=1) HSP 1 Score: 362.459 bits (929), Expect = 9.196e-115 Identity = 193/450 (42.89%), Postives = 269/450 (59.78%), Query Frame = 3
Query: 432 LNFPSIFNYLPHLIQFANDLEP-IRLHNKSIETAHRKPKFVFGIPTVKRLKKSYLVDTIRSILAGMKLSERSKIVIVVYIGEKDQSHIKYVTDDIVGNFTSEVQQGLVEVIAPPEHYYPDLDDLPLSFGDPKERVKWRSKQNLDYSYMMMYAQQKAEYYLQLEDDVIASKGYLQKIEIFMNSQKHKPWFMLEFCRLGFIGKLFHSQQLSNLIEFFLMFYKQKPNDWLLDHYIEVLVCSPEKGRKECNAEKKKVRMNSKPSLFQHVGKHSSLKGKVQKLIDRAFPGAAKRKEKGEDQFFPHDNIKATIQTNAVEYSKFKIKSAYEGHNLAWIKTPKNSTFISFHFDTPVKIEKFLFRTGNKDHPGDVLKYGMVEVQTAHTVKHQAENHKDIKVDDNNDP-SKTGYVSVGTFNDKGLASGTVPKSLGDISELRLRVTLDVMTNWVIINEFMV 1775
L+ P++F++LPHL+ + L+P +R+ + V GIP+V+R SYL DT+ S+++ + E+ VIVV I E D + VT++I F +E+ GL+EVI+P H+YPD L SFGDPKERV+WR+KQNLDY ++MMYAQ K YY+QLEDD++A YL ++ F Q + W +LEF +LGFIGK+F S LS ++EF LMFY+ KP DWLLDH + V VC+PEK K C+ +K +R+ KPSLFQHVG HSSL GK+QKL D+ F A RKE H N A + T+ Y F ++ AY + W TP FI F F P+++E+F FR+GN +HP D L VEV + E ++ + P S GY+ +G+F KG+A G V + G + LRL + D WVI++E +
Sbjct: 110 LHLPTVFHHLPHLLAKESSLQPAVRVGQGRTGVS-----VVMGIPSVRREVHSYLTDTLHSLISELSPQEKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLLEVISPSPHFYPDFSRLRESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILMFYRDKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLKDKDFGKQALRKE--------HVNPPAEVSTSLKTYQHFTLEKAYLREDFFWAFTPAAGDFIRFRFFQPLRLERFFFRSGNIEHPEDKLFNTSVEVLPFDNPQSDKEALQEGRTATLRYPRSPDGYLQIGSFY-KGVAEGEVDPAFGPLEALRLSIQTDSPV-WVILSEIFL 544
The following BLAST results are available for this feature:
|
