TCONS_00071842-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071842-protein
Unique Name	TCONS_00071842-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	577

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071842-protein ID=TCONS_00071842-protein|Name=TCONS_00071842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=577bp
MNIFRRRNFLSRTVRRSVVILLFLSLLGTVFLYTIWRDSSPDDTIVDQKN
TFIFALQQNKIDVGNFREKRLADNRNQPFNREIIERAARKAPISSTTTKE
ITAPPPKPTKEIKRQEVVIQYKLNRNSELNFPSIFNYLPHLIQFANDLEP
IRLHNKSIETAHRKPKFVFGIPTVKRLKKSYLVDTIRSILAGMKLSERSK
IVIVVYIGEKDQSHIKYVTDDIVGNFTSEVQQGLVEVIAPPEHYYPDLDD
LPLSFGDPKERVKWRSKQNLDYSYMMMYAQQKAEYYLQLEDDVIASKGYL
QKIEIFMNSQKHKPWFMLEFCRLGFIGKLFHSQQLSNLIEFFLMFYKQKP
NDWLLDHYIEVLVCSPEKGRKECNAEKKKVRMNSKPSLFQHVGKHSSLKG
KVQKLIDRAFPGAAKRKEKGEDQFFPHDNIKATIQTNAVEYSKFKIKSAY
EGHNLAWIKTPKNSTFISFHFDTPVKIEKFLFRTGNKDHPGDVLKYGMVE
VQTAHTVKHQAENHKDIKVDDNNDPSKTGYVSVGTFNDKGLASGTVPKSL
GDISELRLRVTLDVMTNWVIINEFMVC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044608	XLOC_044608	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071842	TCONS_00071842	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006759	Glyco_transf_54

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016758	transferase activity, transferring hexosyl groups

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016758	transferase activity, transferring hexosyl groups

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006759	Glycosyl transferase family 54	PFAM	PF04666	Glyco_transf_54	coord: 125..410 e-value: 8.7E-109 score: 362.7

Blast

[Close]

BLAST of TCONS_00071842-protein vs. Swiss-Prot (Human)
Match: MGT4B (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B OS=Homo sapiens GN=MGAT4B PE=1 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 7.723e-119
Identity = 193/450 (42.89%), Postives = 269/450 (59.78%), Query Frame = 0

Query:  129 LNFPSIFNYLPHLIQFANDLEP-IRLHNKSIETAHRKPKFVFGIPTVKRLKKSYLVDTIRSILAGMKLSERSKIVIVVYIGEKDQSHIKYVTDDIVGNFTSEVQQGLVEVIAPPEHYYPDLDDLPLSFGDPKERVKWRSKQNLDYSYMMMYAQQKAEYYLQLEDDVIASKGYLQKIEIFMNSQKHKPWFMLEFCRLGFIGKLFHSQQLSNLIEFFLMFYKQKPNDWLLDHYIEVLVCSPEKGRKECNAEKKKVRMNSKPSLFQHVGKHSSLKGKVQKLIDRAFPGAAKRKEKGEDQFFPHDNIKATIQTNAVEYSKFKIKSAYEGHNLAWIKTPKNSTFISFHFDTPVKIEKFLFRTGNKDHPGDVLKYGMVEVQTAHTVKHQAENHKDIKVDDNNDP-SKTGYVSVGTFNDKGLASGTVPKSLGDISELRLRVTLDVMTNWVIINEFMV 576
            L+ P++F++LPHL+   + L+P +R+       +      V GIP+V+R   SYL DT+ S+++ +   E+   VIVV I E D  +   VT++I   F +E+  GL+EVI+P  H+YPD   L  SFGDPKERV+WR+KQNLDY ++MMYAQ K  YY+QLEDD++A   YL  ++ F   Q  + W +LEF +LGFIGK+F S  LS ++EF LMFY+ KP DWLLDH + V VC+PEK  K C+ +K  +R+  KPSLFQHVG HSSL GK+QKL D+ F   A RKE        H N  A + T+   Y  F ++ AY   +  W  TP    FI F F  P+++E+F FR+GN +HP D L    VEV      +   E  ++ +      P S  GY+ +G+F  KG+A G V  + G +  LRL +  D    WVI++E  +
Sbjct:  110 LHLPTVFHHLPHLLAKESSLQPAVRVGQGRTGVS-----VVMGIPSVRREVHSYLTDTLHSLISELSPQEKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLLEVISPSPHFYPDFSRLRESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILMFYRDKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLKDKDFGKQALRKE--------HVNPPAEVSTSLKTYQHFTLEKAYLREDFFWAFTPAAGDFIRFRFFQPLRLERFFFRSGNIEHPEDKLFNTSVEVLPFDNPQSDKEALQEGRTATLRYPRSPDGYLQIGSFY-KGVAEGEVDPAFGPLEALRLSIQTDSPV-WVILSEIFL 544

The following BLAST results are available for this feature:

BLAST of TCONS_00071842-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071842-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MGT4B	7.723e-119	42.89	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglu...	[more]

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TCONS_00071842-protein (polypeptide) - C. hemisphaerica