TCONS_00071838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071838
Unique NameTCONS_00071838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071838 ID=TCONS_00071838|Name=TCONS_00071838|organism=Clytia hemisphaerica|type=transcript|length=1569bp
CCGATGGTCGAACATTAGGCGGCACATCCCCGTCAGTTCGTAACCCTTGC
TTTGATAGGTATATCGTGTTCTTCTATATTcagaatttttaacattttac
aaCTACAACAAAAGTAACCTCTTTAAACAACAATGACCAACATCTTGAAC
TCTACCACGTCACCAAACTTGATCGATTTCAAATTCGGTCAACCCAAACA
TTACCAGAACACATCCAACGCTGTATGTTTCACTCTCTTCACACCTGAAG
CTGTTCAAAACACTCATGGAATCATTTTGATCATCGGTTACTCCATTATC
ACTCTCTTAGTCATCATCAGTAATACCACCTTAATCGTTGGTTTATACAA
AATCAACACATTGTTCACCGTAGCGCAACGTCTATTCATCTTGATGTCTT
CAATGGATCTTATTATCGGTCTTGTTTTTCTACCACTTCAAATATACATG
ATCTACACATCAGAACGTCAAGGATGTGGACTCATTATGATTCAAGCGTT
CGTATCAATGTTCTTCCCATACATGTCTGGCTTAATCCTACTCTTAGTCG
TGGTACATCGTTTTTTCCTAGTCGTTAATACGCGACTCACAAAGAAGTTA
GCGCACCGTAGAAACGTACGTATCTGTCTCTTCATCTCCACACTCTTTGC
GGCATCCATGGCAACGTGGTATGCGTTCCAGAAGAGATCTGACAGCCTCA
CAGCTCATGGTACTTATTATTTAACAGCTGGATTGACCGTTTGTAATTAT
GTGGTCATCATCACCTTcatgaatttcaaaatggtccgatttCTCCATAA
AGCTTCAGAAAAACGCATCAAGCGAATGAGTGTTTCTAATTCAACCAAAA
GTCGTAGCACGTATCATAAACGAGTTGCAAAAACATTGGCTCTTATGTCT
ATAGTTGTGTCTGTTTGTTACACTCCTATGGCTGTGTCTTTTGTCGTGTC
AGGTCTTTTCTTATTATATCGCTACCCTCACATGGAAGTCATACAAATCA
TCATACCATGGTCACAAATGGTTATGACTTTAAACTCTGCATTGAACTCT
TTCATTTATATCGTCCgaacaaagaaaatgttgaaTCTGTATAAAAGGGT
gttgaaaagattttgttgTCGTGTTTTTGGCAGAGAGAATAAAGTCAATC
GTACTGTTGTCATGAGTTTCGAAATGTCAACAACAGCTAGGCGTAATCAG
AGGACAGAATCCACGAACCATGGCAGTGATCGATTTTGAATGACTCTACT
CGAAATTATCCTTCCAACGATGAACGATATCATTCAATCACTGGAATCAT
ATTTTGAACTTAGAttgcttttgatttttggtcAGCCGATTCCATGTGCC
AGTCACCTCCAGtagtagtaagtaagtttgcgaccgcagtcgagggcgac
cagAAGGCTCCCTTTTTgtatagctatctacccgaaggtagggccACTCC
TTTCCCTAGAAACGCATGGAGTCACCTCCAAGCCCATGGGAATGTTCTTC
AGCCAGTAGGGATAGAAAAGGAGGACATTGTCAGATGAGAGTATTGGATG
GAGATCTCGAACTGAGGAG
Run BLAST on NCBI

protein sequence of TCONS_00071838-protein

>TCONS_00071838-protein ID=TCONS_00071838-protein|Name=TCONS_00071838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MTNILNSTTSPNLIDFKFGQPKHYQNTSNAVCFTLFTPEAVQNTHGIILI
IGYSIITLLVIISNTTLIVGLYKINTLFTVAQRLFILMSSMDLIIGLVFL
PLQIYMIYTSERQGCGLIMIQAFVSMFFPYMSGLILLLVVVHRFFLVVNT
RLTKKLAHRRNVRICLFISTLFAASMATWYAFQKRSDSLTAHGTYYLTAG
LTVCNYVVIITFMNFKMVRFLHKASEKRIKRMSVSNSTKSRSTYHKRVAK
TLALMSIVVSVCYTPMAVSFVVSGLFLLYRYPHMEVIQIIIPWSQMVMTL
NSALNSFIYIVRTKKMLNLYKRVLKRFCCRVFGRENKVNRTVVMSFEMST
TARRNQRTESTNHGSDRF
Run BLAST on NCBI

transcript from alignment at scaffold_64:41749..45649+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071838 ID=TCONS_00071838|Name=TCONS_00071838|organism=Clytia hemisphaerica|type=transcript|length=3901bp|location=Sequence derived from alignment at scaffold_64:41749..45649+ (Clytia hemisphaerica)
CCGATGGTCGAACATTAGGCGGCACATCCCCGTCAGTTCGTAACCCTTGC TTTGATAGGTATATCGTGTTCTTCTATATTcagaatttttaacattttac aaCTACAACAAAAGTAACCTCTTTAAACAACAATGACCAACATCTTGAAC TCTACCACGTCACCAAACTTGATCGATTTCAAATTCGGTCAACCCAAACA TTACCAGAACACATCCAACGCTGTATGTTTCACTCTCTTCACACCTGAAG CTGTTCAAAACACTCATGGAATCATTTTGATCATCGGTTACTCCATTATC ACTCTCTTAGTCATCATCAGTAATACCACCTTAATCGTTGGTTTATACAA AATCAACACATTGTTCACCGTAGCGCAACGTCTATTCATCTTGATGTCTT CAATGGATCTTATTATCGGTCTTGTTTTTCTACCACTTCAAATATACATG ATCTACACATCAGAACGTCAAGGATGTGGACTCATTATGATTCAAGCGTT CGTATCAATGTTCTTCCCATACATGTCTGGCTTAATCCTACTCTTAGTCG TGGTACATCGTTTTTTCCTAGTCGTTAATACGCGACTCACAAAGAAGTTA GCGCACCGTAGAAACGTACGTATCTGTCTCTTCATCTCCACACTCTTTGC GGCATCCATGGCAACGTGGTATGCGTTCCAGAAGAGATCTGACAGCCTCA CAGCTCATGGTACTTATTATTTAACAGCTGGATTGACCGTTTGTAATTAT GTGGTCATCATCACCTTcatgaatttcaaaatggtccgatttCTCCATAA AGCTTCAGAAAAACGTAATTAAAGTTCAGCTCCTACNAATttcaaaatgg tccgatttCTCCATAAAGCTTCAGAAAAACGTAAGTAAAGTTCAGCTCCT ACCTTATAAGAAGAAAtggcggaatttattttggcgatttaatgAGActt ctaaatttggcgagaattaattttggcaaacgacccattttttgttgaat atttaagggctctgaccatagtgaatttttaatatttgccacttacaaaa tgTAAAGTTCTACTTGCAgtagcccacaaaactgtggcatgttatacata ttctgttaggccaattatccgtgagtctgaaaatttaagaatcgcaatga aaaactttgatgaaaaagaatatgaagacttttgcgaagaagagtatttc aactttgaagagcttatctatcttcgatgaagaaaaaacattttgaaaat ctttttgcggtagatggtatcttttatcgaactaaaattattttttcgga aaatttttctgaaagcttatttgcttcaaaatcttaaaaatagtgctttt tgaccaattttccatcccaatttttcatagaaaaacagccataacttttg atgcatttatttagaaaattttttttataaaaaaaggtgatgcaacatat tattaccgtctttttaaagttcataacgtcatttttgctattaaattctt aattactcttaagggattgaTTAAAAaccaatttataaaggcaattcttt gttgaaagtgtaaaagaacctaaaacataacttttatgctcaaatactaa aatcaattttccgactatggtcagagcccttaagggctctgaccatagtg aatttttcataattgccgtgtttaaaatgtgttttctgactgatgtaacc aacaaaactatggcatgttatacattttctgttagacaaactattcctga aattgaaaattcaaaaattgcattgaaaaaaatcgatgaagaagaaaatg aagacttttacgaggaagagtatttcaactttgaagagcttagtttcggc gaagaaaaaacatttcgaaaaaattttcgcagtagatggtgtatctttta cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNtaaaggcaattctttgttaaaagtg ttaaagaatttaaaacataacttttatgttcagatactaaaatcaatttt ctgactatggtcagagcccttaagcttAAAAAGGATGAAAAAGGGGATTT TCGCCGagatttctttccgccaaaatttattctcTTAAGGTATTTCCCGC CATTAACCCTCATGTATTTAAATTCAATCATTAGTAGtaatttgtattaa aaattaACTAAAATCTCACAGAGCTGTAATCCTATATTGTGAAGAATAAC TAAAAACTAATACAGTCAACTCGCTCTTATTCGAACTCTTTTATTCGAAC CTTTCTGTAATTTGATTGGTCCTCTCAGCTGAAAATTAATCAAATTCTCT CAGAAATTATCTACTcattctataattcgaaaaaaattcttgaactcttg aaaatcgaatcagAGCAATGAGTCAACTGTATCTACCGTACATTAGGGCC AGCgcaaaccagtccaacatttcattcaacatgatttttcaatgttgggt aaaaaatgtttgatggaaaaacttgcgttgGATGAAGCGAAAATCAAGGC CGAGGCAAActgatccaacatttcatccgacATGACTTGCGGAAAAAAAA tgatggcgatcaaacttcatccaacaccgtccaacacgatttttttcttc tttatttgaattttcatttttttccaaaaatttaaattgacGCAAAttga tccaacatttcatccaactgaagtctaatttgttcgaattacagaaaggt tTGAATCATATAAAGCATCTGACGAGGGTTTCAATTTGACAGAtactgag aattagttcgaattatagcgaCATTCGGATAATAGAAGCTCGAATTAGTG AATGTCCACTGAGTAGATCGGAACAGAAATTTTACCCTGGCTCCTGTACG ATTTACATTTCACTAATtagtaatattttattttctatcatTTTAGGCAT CAAGCGAATGAGTGTTTCTAATTCAACCAAAAGTCGTAGCACGTATCATA AACGAGTTGCAAAAACATTGGCTCTTATGTCTATAGTTGTGTCTGTTTGT TACACTCCTATGGCTGTGTCTTTTGTCGTGTCAGGTCTTTTCTTATTATA TCGCTACCCTCACATGGAAGTCATACAAATCATCATACCATGGTCACAAA TGGTTATGACTTTAAACTCTGCATTGAACTCTTTCATTTATATCGTCCga acaaagaaaatgttgaaTCTGTATAAAAGGGTgttgaaaagattttgttg TCGTGTTTTTGGCAGAGAGAATAAAGTCAATCGTACTGTTGTCATGAGTT TCGAAATGTCAACAACAGCTAGGCGTAATCAGAGGACAGAATCCACGAAC CATGGCAGTGATCGATTTTGAATGACTCTACTCGAAATTATCCTTCCAAC GATGAACGATATCATTCAATCACTGGAATCATATTTTGAACTTAGAttgc ttttgatttttggtcAGCCGATTCCATGTGCCAGTCACCTCCAGtagtag taagtaagtttgcgaccgcagtcgagggcgaccagAAGGCTCCCTTTTTg tatagctatctacccgaaggtagggccACTCCTTTCCCTAGAAACGCATG GAGTCACCTCCAAGCCCATGGGAATGTTCTTCAGCCAGTAGGGATAGAAA AGGAGGACATTGTCAGATGAGAGTATTGGATGGAGATCTCGAACTGAGGA G

Coding sequence (CDS) from alignment at scaffold_64:41749..45649+

>TCONS_00071838 ID=TCONS_00071838|Name=TCONS_00071838|organism=Clytia hemisphaerica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_64:41749..45649+ (Clytia hemisphaerica)
ATGACCAACATCTTGAACTCTACCACGTCACCAAACTTGATCGATTTCAA
ATTCGGTCAACCCAAACATTACCAGAACACATCCAACGCTGTATGTTTCA
CTCTCTTCACACCTGAAGCTGTTCAAAACACTCATGGAATCATTTTGATC
ATCGGTTACTCCATTATCACTCTCTTAGTCATCATCAGTAATACCACCTT
AATCGTTGGTTTATACAAAATCAACACATTGTTCACCGTAGCGCAACGTC
TATTCATCTTGATGTCTTCAATGGATCTTATTATCGGTCTTGTTTTTCTA
CCACTTCAAATATACATGATCTACACATCAGAACGTCAAGGATGTGGACT
CATTATGATTCAAGCGTTCGTATCAATGTTCTTCCCATACATGTCTGGCT
TAATCCTACTCTTAGTCGTGGTACATCGTTTTTTCCTAGTCGTTAATACG
CGACTCACAAAGAAGTTAGCGCACCGTAGAAACGTACGTATCTGTCTCTT
CATCTCCACACTCTTTGCGGCATCCATGGCAACGTGGTATGCGTTCCAGA
AGAGATCTGACAGCCTCACAGCTCATGGTACTTATTATTTAACAGCTGGA
TTGACCGTTTGTAATTATGTGGTCATCATCACCTTcatgaatttcaaaat
ggtccgatttCTCCATAAAGCTTCAGAAAAACGCATCAAGCGAATGAGTG
TTTCTAATTCAACCAAAAGTCGTAGCACGTATCATAAACGAGTTGCAAAA
ACATTGGCTCTTATGTCTATAGTTGTGTCTGTTTGTTACACTCCTATGGC
TGTGTCTTTTGTCGTGTCAGGTCTTTTCTTATTATATCGCTACCCTCACA
TGGAAGTCATACAAATCATCATACCATGGTCACAAATGGTTATGACTTTA
AACTCTGCATTGAACTCTTTCATTTATATCGTCCgaacaaagaaaatgtt
gaaTCTGTATAAAAGGGTgttgaaaagattttgttgTCGTGTTTTTGGCA
GAGAGAATAAAGTCAATCGTACTGTTGTCATGAGTTTCGAAATGTCAACA
ACAGCTAGGCGTAATCAGAGGACAGAATCCACGAACCATGGCAGTGATCG
ATTTTGAATGACCAACATCTTGAACTCTACCACGTCACCAAACTTGATCG
ATTTCAAATTCGGTCAACCCAAACATTACCAGAACACATCCAACGCTGTA
TGTTTCACTCTCTTCACACCTGAAGCTGTTCAAAACACTCATGGAATCAT
TTTGATCATCGGTTACTCCATTATCACTCTCTTAGTCATCATCAGTAATA
CCACCTTAATCGTTGGTTTATACAAAATCAACACATTGTTCACCGTAGCG
CAACGTCTATTCATCTTGATGTCTTCAATGGATCTTATTATCGGTCTTGT
TTTTCTACCACTTCAAATATACATGATCTACACATCAGAACGTCAAGGAT
GTGGACTCATTATGATTCAAGCGTTCGTATCAATGTTCTTCCCATACATG
TCTGGCTTAATCCTACTCTTAGTCGTGGTACATCGTTTTTTCCTAGTCGT
TAATACGCGACTCACAAAGAAGTTAGCGCACCGTAGAAACGTACGTATCT
GTCTCTTCATCTCCACACTCTTTGCGGCATCCATGGCAACGTGGTATGCG
TTCCAGAAGAGATCTGACAGCCTCACAGCTCATGGTACTTATTATTTAAC
AGCTGGATTGACCGTTTGTAATTATGTGGTCATCATCACCTTcatgaatt
tcaaaatggtccgatttCTCCATAAAGCTTCAGAAAAACGCATCAAGCGA
ATGAGTGTTTCTAATTCAACCAAAAGTCGTAGCACGTATCATAAACGAGT
TGCAAAAACATTGGCTCTTATGTCTATAGTTGTGTCTGTTTGTTACACTC
CTATGGCTGTGTCTTTTGTCGTGTCAGGTCTTTTCTTATTATATCGCTAC
CCTCACATGGAAGTCATACAAATCATCATACCATGGTCACAAATGGTTAT
GACTTTAAACTCTGCATTGAACTCTTTCATTTATATCGTCCgaacaaaga
aaatgttgaaTCTGTATAAAAGGGTgttgaaaagattttgttgTCGTGTT
TTTGGCAGAGAGAATAAAGTCAATCGTACTGTTGTCATGAGTTTCGAAAT
GTCAACAACAGCTAGGCGTAATCAGAGGACAGAATCCACGAACCATGGCA
GTGATCGATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044605XLOC_044605Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071838-proteinTCONS_00071838-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071838-exon-scaffold_64-1491911889:41749..42562TCONS_00071838-exon-scaffold_64-1491911889:41749..42562Clytia hemisphaericaexon
TCONS_00071838-exon-scaffold_64-1510915933:41749..42562TCONS_00071838-exon-scaffold_64-1510915933:41749..42562Clytia hemisphaericaexon
TCONS_00071838-exon-scaffold_64-1575043694:41749..42562TCONS_00071838-exon-scaffold_64-1575043694:41749..42562Clytia hemisphaericaexon
TCONS_00071838-exon-scaffold_64-1491911889:44895..45649TCONS_00071838-exon-scaffold_64-1491911889:44895..45649Clytia hemisphaericaexon
TCONS_00071838-exon-scaffold_64-1510915933:44895..45649TCONS_00071838-exon-scaffold_64-1510915933:44895..45649Clytia hemisphaericaexon
TCONS_00071838-exon-scaffold_64-1575043694:44895..45649TCONS_00071838-exon-scaffold_64-1575043694:44895..45649Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:41749..45649 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.677919 0.528862 0.561774 0.200254 0.182842 0.33713 0.435999 0.435176 0.114254 0.23587 0.290721 0.173735 1.02195 1.09253 0.0769889 0.220322 0.271419 0.243421 0.6726 2.03341 0.632102 0.639411 0.927221 0.653145 1.16456 1.77555 0 0.229047 0.351137 0.255538
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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