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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071838 ID=TCONS_00071838|Name=TCONS_00071838|organism=Clytia hemisphaerica|type=transcript|length=1569bp
CCGATGGTCGAACATTAGGCGGCACATCCCCGTCAGTTCGTAACCCTTGC
TTTGATAGGTATATCGTGTTCTTCTATATTcagaatttttaacattttac
aaCTACAACAAAAGTAACCTCTTTAAACAACAATGACCAACATCTTGAAC
TCTACCACGTCACCAAACTTGATCGATTTCAAATTCGGTCAACCCAAACA
TTACCAGAACACATCCAACGCTGTATGTTTCACTCTCTTCACACCTGAAG
CTGTTCAAAACACTCATGGAATCATTTTGATCATCGGTTACTCCATTATC
ACTCTCTTAGTCATCATCAGTAATACCACCTTAATCGTTGGTTTATACAA
AATCAACACATTGTTCACCGTAGCGCAACGTCTATTCATCTTGATGTCTT
CAATGGATCTTATTATCGGTCTTGTTTTTCTACCACTTCAAATATACATG
ATCTACACATCAGAACGTCAAGGATGTGGACTCATTATGATTCAAGCGTT
CGTATCAATGTTCTTCCCATACATGTCTGGCTTAATCCTACTCTTAGTCG
TGGTACATCGTTTTTTCCTAGTCGTTAATACGCGACTCACAAAGAAGTTA
GCGCACCGTAGAAACGTACGTATCTGTCTCTTCATCTCCACACTCTTTGC
GGCATCCATGGCAACGTGGTATGCGTTCCAGAAGAGATCTGACAGCCTCA
CAGCTCATGGTACTTATTATTTAACAGCTGGATTGACCGTTTGTAATTAT
GTGGTCATCATCACCTTcatgaatttcaaaatggtccgatttCTCCATAA
AGCTTCAGAAAAACGCATCAAGCGAATGAGTGTTTCTAATTCAACCAAAA
GTCGTAGCACGTATCATAAACGAGTTGCAAAAACATTGGCTCTTATGTCT
ATAGTTGTGTCTGTTTGTTACACTCCTATGGCTGTGTCTTTTGTCGTGTC
AGGTCTTTTCTTATTATATCGCTACCCTCACATGGAAGTCATACAAATCA
TCATACCATGGTCACAAATGGTTATGACTTTAAACTCTGCATTGAACTCT
TTCATTTATATCGTCCgaacaaagaaaatgttgaaTCTGTATAAAAGGGT
gttgaaaagattttgttgTCGTGTTTTTGGCAGAGAGAATAAAGTCAATC
GTACTGTTGTCATGAGTTTCGAAATGTCAACAACAGCTAGGCGTAATCAG
AGGACAGAATCCACGAACCATGGCAGTGATCGATTTTGAATGACTCTACT
CGAAATTATCCTTCCAACGATGAACGATATCATTCAATCACTGGAATCAT
ATTTTGAACTTAGAttgcttttgatttttggtcAGCCGATTCCATGTGCC
AGTCACCTCCAGtagtagtaagtaagtttgcgaccgcagtcgagggcgac
cagAAGGCTCCCTTTTTgtatagctatctacccgaaggtagggccACTCC
TTTCCCTAGAAACGCATGGAGTCACCTCCAAGCCCATGGGAATGTTCTTC
AGCCAGTAGGGATAGAAAAGGAGGACATTGTCAGATGAGAGTATTGGATG
GAGATCTCGAACTGAGGAG Run BLAST on NCBI protein sequence of TCONS_00071838-protein >TCONS_00071838-protein ID=TCONS_00071838-protein|Name=TCONS_00071838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MTNILNSTTSPNLIDFKFGQPKHYQNTSNAVCFTLFTPEAVQNTHGIILI
IGYSIITLLVIISNTTLIVGLYKINTLFTVAQRLFILMSSMDLIIGLVFL
PLQIYMIYTSERQGCGLIMIQAFVSMFFPYMSGLILLLVVVHRFFLVVNT
RLTKKLAHRRNVRICLFISTLFAASMATWYAFQKRSDSLTAHGTYYLTAG
LTVCNYVVIITFMNFKMVRFLHKASEKRIKRMSVSNSTKSRSTYHKRVAK
TLALMSIVVSVCYTPMAVSFVVSGLFLLYRYPHMEVIQIIIPWSQMVMTL
NSALNSFIYIVRTKKMLNLYKRVLKRFCCRVFGRENKVNRTVVMSFEMST
TARRNQRTESTNHGSDRF Run BLAST on NCBI transcript from alignment at scaffold_64:41749..45649+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071838 ID=TCONS_00071838|Name=TCONS_00071838|organism=Clytia hemisphaerica|type=transcript|length=3901bp|location=Sequence derived from alignment at scaffold_64:41749..45649+ (Clytia hemisphaerica)
CCGATGGTCGAACATTAGGCGGCACATCCCCGTCAGTTCGTAACCCTTGC
TTTGATAGGTATATCGTGTTCTTCTATATTcagaatttttaacattttac
aaCTACAACAAAAGTAACCTCTTTAAACAACAATGACCAACATCTTGAAC
TCTACCACGTCACCAAACTTGATCGATTTCAAATTCGGTCAACCCAAACA
TTACCAGAACACATCCAACGCTGTATGTTTCACTCTCTTCACACCTGAAG
CTGTTCAAAACACTCATGGAATCATTTTGATCATCGGTTACTCCATTATC
ACTCTCTTAGTCATCATCAGTAATACCACCTTAATCGTTGGTTTATACAA
AATCAACACATTGTTCACCGTAGCGCAACGTCTATTCATCTTGATGTCTT
CAATGGATCTTATTATCGGTCTTGTTTTTCTACCACTTCAAATATACATG
ATCTACACATCAGAACGTCAAGGATGTGGACTCATTATGATTCAAGCGTT
CGTATCAATGTTCTTCCCATACATGTCTGGCTTAATCCTACTCTTAGTCG
TGGTACATCGTTTTTTCCTAGTCGTTAATACGCGACTCACAAAGAAGTTA
GCGCACCGTAGAAACGTACGTATCTGTCTCTTCATCTCCACACTCTTTGC
GGCATCCATGGCAACGTGGTATGCGTTCCAGAAGAGATCTGACAGCCTCA
CAGCTCATGGTACTTATTATTTAACAGCTGGATTGACCGTTTGTAATTAT
GTGGTCATCATCACCTTcatgaatttcaaaatggtccgatttCTCCATAA
AGCTTCAGAAAAACGTAATTAAAGTTCAGCTCCTACNAATttcaaaatgg
tccgatttCTCCATAAAGCTTCAGAAAAACGTAAGTAAAGTTCAGCTCCT
ACCTTATAAGAAGAAAtggcggaatttattttggcgatttaatgAGActt
ctaaatttggcgagaattaattttggcaaacgacccattttttgttgaat
atttaagggctctgaccatagtgaatttttaatatttgccacttacaaaa
tgTAAAGTTCTACTTGCAgtagcccacaaaactgtggcatgttatacata
ttctgttaggccaattatccgtgagtctgaaaatttaagaatcgcaatga
aaaactttgatgaaaaagaatatgaagacttttgcgaagaagagtatttc
aactttgaagagcttatctatcttcgatgaagaaaaaacattttgaaaat
ctttttgcggtagatggtatcttttatcgaactaaaattattttttcgga
aaatttttctgaaagcttatttgcttcaaaatcttaaaaatagtgctttt
tgaccaattttccatcccaatttttcatagaaaaacagccataacttttg
atgcatttatttagaaaattttttttataaaaaaaggtgatgcaacatat
tattaccgtctttttaaagttcataacgtcatttttgctattaaattctt
aattactcttaagggattgaTTAAAAaccaatttataaaggcaattcttt
gttgaaagtgtaaaagaacctaaaacataacttttatgctcaaatactaa
aatcaattttccgactatggtcagagcccttaagggctctgaccatagtg
aatttttcataattgccgtgtttaaaatgtgttttctgactgatgtaacc
aacaaaactatggcatgttatacattttctgttagacaaactattcctga
aattgaaaattcaaaaattgcattgaaaaaaatcgatgaagaagaaaatg
aagacttttacgaggaagagtatttcaactttgaagagcttagtttcggc
gaagaaaaaacatttcgaaaaaattttcgcagtagatggtgtatctttta
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtaaaggcaattctttgttaaaagtg
ttaaagaatttaaaacataacttttatgttcagatactaaaatcaatttt
ctgactatggtcagagcccttaagcttAAAAAGGATGAAAAAGGGGATTT
TCGCCGagatttctttccgccaaaatttattctcTTAAGGTATTTCCCGC
CATTAACCCTCATGTATTTAAATTCAATCATTAGTAGtaatttgtattaa
aaattaACTAAAATCTCACAGAGCTGTAATCCTATATTGTGAAGAATAAC
TAAAAACTAATACAGTCAACTCGCTCTTATTCGAACTCTTTTATTCGAAC
CTTTCTGTAATTTGATTGGTCCTCTCAGCTGAAAATTAATCAAATTCTCT
CAGAAATTATCTACTcattctataattcgaaaaaaattcttgaactcttg
aaaatcgaatcagAGCAATGAGTCAACTGTATCTACCGTACATTAGGGCC
AGCgcaaaccagtccaacatttcattcaacatgatttttcaatgttgggt
aaaaaatgtttgatggaaaaacttgcgttgGATGAAGCGAAAATCAAGGC
CGAGGCAAActgatccaacatttcatccgacATGACTTGCGGAAAAAAAA
tgatggcgatcaaacttcatccaacaccgtccaacacgatttttttcttc
tttatttgaattttcatttttttccaaaaatttaaattgacGCAAAttga
tccaacatttcatccaactgaagtctaatttgttcgaattacagaaaggt
tTGAATCATATAAAGCATCTGACGAGGGTTTCAATTTGACAGAtactgag
aattagttcgaattatagcgaCATTCGGATAATAGAAGCTCGAATTAGTG
AATGTCCACTGAGTAGATCGGAACAGAAATTTTACCCTGGCTCCTGTACG
ATTTACATTTCACTAATtagtaatattttattttctatcatTTTAGGCAT
CAAGCGAATGAGTGTTTCTAATTCAACCAAAAGTCGTAGCACGTATCATA
AACGAGTTGCAAAAACATTGGCTCTTATGTCTATAGTTGTGTCTGTTTGT
TACACTCCTATGGCTGTGTCTTTTGTCGTGTCAGGTCTTTTCTTATTATA
TCGCTACCCTCACATGGAAGTCATACAAATCATCATACCATGGTCACAAA
TGGTTATGACTTTAAACTCTGCATTGAACTCTTTCATTTATATCGTCCga
acaaagaaaatgttgaaTCTGTATAAAAGGGTgttgaaaagattttgttg
TCGTGTTTTTGGCAGAGAGAATAAAGTCAATCGTACTGTTGTCATGAGTT
TCGAAATGTCAACAACAGCTAGGCGTAATCAGAGGACAGAATCCACGAAC
CATGGCAGTGATCGATTTTGAATGACTCTACTCGAAATTATCCTTCCAAC
GATGAACGATATCATTCAATCACTGGAATCATATTTTGAACTTAGAttgc
ttttgatttttggtcAGCCGATTCCATGTGCCAGTCACCTCCAGtagtag
taagtaagtttgcgaccgcagtcgagggcgaccagAAGGCTCCCTTTTTg
tatagctatctacccgaaggtagggccACTCCTTTCCCTAGAAACGCATG
GAGTCACCTCCAAGCCCATGGGAATGTTCTTCAGCCAGTAGGGATAGAAA
AGGAGGACATTGTCAGATGAGAGTATTGGATGGAGATCTCGAACTGAGGA
G Coding sequence (CDS) from alignment at scaffold_64:41749..45649+ >TCONS_00071838 ID=TCONS_00071838|Name=TCONS_00071838|organism=Clytia hemisphaerica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_64:41749..45649+ (Clytia hemisphaerica)
ATGACCAACATCTTGAACTCTACCACGTCACCAAACTTGATCGATTTCAA
ATTCGGTCAACCCAAACATTACCAGAACACATCCAACGCTGTATGTTTCA
CTCTCTTCACACCTGAAGCTGTTCAAAACACTCATGGAATCATTTTGATC
ATCGGTTACTCCATTATCACTCTCTTAGTCATCATCAGTAATACCACCTT
AATCGTTGGTTTATACAAAATCAACACATTGTTCACCGTAGCGCAACGTC
TATTCATCTTGATGTCTTCAATGGATCTTATTATCGGTCTTGTTTTTCTA
CCACTTCAAATATACATGATCTACACATCAGAACGTCAAGGATGTGGACT
CATTATGATTCAAGCGTTCGTATCAATGTTCTTCCCATACATGTCTGGCT
TAATCCTACTCTTAGTCGTGGTACATCGTTTTTTCCTAGTCGTTAATACG
CGACTCACAAAGAAGTTAGCGCACCGTAGAAACGTACGTATCTGTCTCTT
CATCTCCACACTCTTTGCGGCATCCATGGCAACGTGGTATGCGTTCCAGA
AGAGATCTGACAGCCTCACAGCTCATGGTACTTATTATTTAACAGCTGGA
TTGACCGTTTGTAATTATGTGGTCATCATCACCTTcatgaatttcaaaat
ggtccgatttCTCCATAAAGCTTCAGAAAAACGCATCAAGCGAATGAGTG
TTTCTAATTCAACCAAAAGTCGTAGCACGTATCATAAACGAGTTGCAAAA
ACATTGGCTCTTATGTCTATAGTTGTGTCTGTTTGTTACACTCCTATGGC
TGTGTCTTTTGTCGTGTCAGGTCTTTTCTTATTATATCGCTACCCTCACA
TGGAAGTCATACAAATCATCATACCATGGTCACAAATGGTTATGACTTTA
AACTCTGCATTGAACTCTTTCATTTATATCGTCCgaacaaagaaaatgtt
gaaTCTGTATAAAAGGGTgttgaaaagattttgttgTCGTGTTTTTGGCA
GAGAGAATAAAGTCAATCGTACTGTTGTCATGAGTTTCGAAATGTCAACA
ACAGCTAGGCGTAATCAGAGGACAGAATCCACGAACCATGGCAGTGATCG
ATTTTGAATGACCAACATCTTGAACTCTACCACGTCACCAAACTTGATCG
ATTTCAAATTCGGTCAACCCAAACATTACCAGAACACATCCAACGCTGTA
TGTTTCACTCTCTTCACACCTGAAGCTGTTCAAAACACTCATGGAATCAT
TTTGATCATCGGTTACTCCATTATCACTCTCTTAGTCATCATCAGTAATA
CCACCTTAATCGTTGGTTTATACAAAATCAACACATTGTTCACCGTAGCG
CAACGTCTATTCATCTTGATGTCTTCAATGGATCTTATTATCGGTCTTGT
TTTTCTACCACTTCAAATATACATGATCTACACATCAGAACGTCAAGGAT
GTGGACTCATTATGATTCAAGCGTTCGTATCAATGTTCTTCCCATACATG
TCTGGCTTAATCCTACTCTTAGTCGTGGTACATCGTTTTTTCCTAGTCGT
TAATACGCGACTCACAAAGAAGTTAGCGCACCGTAGAAACGTACGTATCT
GTCTCTTCATCTCCACACTCTTTGCGGCATCCATGGCAACGTGGTATGCG
TTCCAGAAGAGATCTGACAGCCTCACAGCTCATGGTACTTATTATTTAAC
AGCTGGATTGACCGTTTGTAATTATGTGGTCATCATCACCTTcatgaatt
tcaaaatggtccgatttCTCCATAAAGCTTCAGAAAAACGCATCAAGCGA
ATGAGTGTTTCTAATTCAACCAAAAGTCGTAGCACGTATCATAAACGAGT
TGCAAAAACATTGGCTCTTATGTCTATAGTTGTGTCTGTTTGTTACACTC
CTATGGCTGTGTCTTTTGTCGTGTCAGGTCTTTTCTTATTATATCGCTAC
CCTCACATGGAAGTCATACAAATCATCATACCATGGTCACAAATGGTTAT
GACTTTAAACTCTGCATTGAACTCTTTCATTTATATCGTCCgaacaaaga
aaatgttgaaTCTGTATAAAAGGGTgttgaaaagattttgttgTCGTGTT
TTTGGCAGAGAGAATAAAGTCAATCGTACTGTTGTCATGAGTTTCGAAAT
GTCAACAACAGCTAGGCGTAATCAGAGGACAGAATCCACGAACCATGGCA
GTGATCGATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071838-exon-scaffold_64-1491911889:41749..42562 | TCONS_00071838-exon-scaffold_64-1491911889:41749..42562 | Clytia hemisphaerica | exon |
| TCONS_00071838-exon-scaffold_64-1510915933:41749..42562 | TCONS_00071838-exon-scaffold_64-1510915933:41749..42562 | Clytia hemisphaerica | exon |
| TCONS_00071838-exon-scaffold_64-1575043694:41749..42562 | TCONS_00071838-exon-scaffold_64-1575043694:41749..42562 | Clytia hemisphaerica | exon |
| TCONS_00071838-exon-scaffold_64-1491911889:44895..45649 | TCONS_00071838-exon-scaffold_64-1491911889:44895..45649 | Clytia hemisphaerica | exon |
| TCONS_00071838-exon-scaffold_64-1510915933:44895..45649 | TCONS_00071838-exon-scaffold_64-1510915933:44895..45649 | Clytia hemisphaerica | exon |
| TCONS_00071838-exon-scaffold_64-1575043694:44895..45649 | TCONS_00071838-exon-scaffold_64-1575043694:44895..45649 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:41749..45649 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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