Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071815 ID=TCONS_00071815|Name=TCONS_00071815|organism=Clytia hemisphaerica|type=transcript|length=2318bp
AGGAATAAGAACAGGATGAGAACAATTTAAAGCTCAATGTCACAAAGAAC
AGCCGAACATCGACAATATATTTCTTGTTTCTATGAAATGATGATTGTAA
CAAatgaattttcgaatttttcaagatagtataaattttttattctttct
taGTAAGTAATTTGTACTTTTTAactctttcaaaaaatattacaaaaatt
taggaattgtttttttttcaaggtttaaaaaaaataatatatacaaGCTA
AAGGAGGTCTATTATAGAATTATTAtgacaataaataaaaaaacaagatt
tcttttacgaaaaaaacaaacaacgaAACTGAATGTCAAGATACTGGGGT
TGTGGAAACTCCCGAAAGTTTGTTCCGATAACATCCAGATACAACTGATT
TCGATAGTATATTTGTTTCTCCCACAAAATTCTAACACGATAAGATGGTT
TTGagatcaaatcaaaaattatgaTAAATCACATAATCAATATGCTTTTT
ACCTTTTTAAAATAAACCACCCAGGGTCATGTCAACTTTTTTAAGAATCT
TGTATTATCAAAACACAATTaactttgttattgttttttttctgtgttta
tgtatgtgtgtctttttcacaaaattttccggTTCTATCTAAAAAGAGGT
ATTATAGGTCATGTGTTGTTCAACAATCTTTATCTTTAATACTATTCAAC
CCTGTTCCACACAAACCTCAAGAAAAAGGGTATCATCAACTAAATAACCA
TCCTGTTCCAAGCAAGCCTGGTGAGCAAACATAGGACATCCAGAAGCCAC
GTTCATTTCTTTAGTTGGCTTTTGAAAGCTAGCTGAGCTCTTTTCTGGTG
CCATTTTCTCTATCAAGTCTTTTGATCTGTTCAACTGATTTATCAATGTG
AATTTAACAGAATGGTTAAACGGCCATACAAGTAAATTATCATATTCACT
CTTCATGATTACTAGAAAGACTGAAAGGTGTGTTCCAAGTCCTGCACCAT
CTCCATTAGGGTACATTCTTAAACAGAATTTGTAGCCTTCTTGTGATTTC
GTATAACTAGGCGCGCTATGTAAAGCGTTAATGCTCCCATTCAAAACTTG
TCGTCTTCGCGATTTAAAATGTTCTATGCGCCATAGAATACGCCCGTTGT
AATACGTATTGTCTTGAAGTTGTAGACGTAAATCGAGCTGGTCGAtatat
tttcgattttctttgattagtGAGAAGAGGTTTCGTTTTGATACTGCTAC
AGTATTATTGGCTGATTCTGCGTTTTCTTGAGGCTGTGGTGACGTTGGTG
GAGACATGCATTCGTCCTCGTCCGCCTCTTGTTTGCTTTCTGAAGGGGCG
GGTGAAGGCGCCCGCGAGGGGTTACTAGGCGGACAAGATGCACCTTCTAT
TAAGGtgacttttgaaaattgttcttttagtGATTTGAACTCTTCCATGA
CGTCACTTCGAAATTCTTCGAatcttttgttttggttttcgaCAGTTGCC
TGGAGTTGTCGTATGGTTTCCATTAATGTAAGTTCGCGTTGGTCTTGTTC
GGAAATTTGTTGTCTCATCTGtgcattttgttttttcaacAGTTGTATGG
TTTGTTGTGAAGGATTGCCGTGTTCTTTTCGTTGTTGGTGTTGTTGTTGA
TGCTGTTGTAGGTGATGGTGTTGTGAACTTGTCGTAGAATTTTGTTGAAC
GTTGTTGGAATTACTGCTACCTGAACGCATCATgatttcaaactattttt
gcatatttttcttgctagaataaaaaaaacgaaacattATATACAATATA
GAGGCTGAGGAGTCTTTTGTCGAAATGACACTACTTTGATTGATGTTCTA
CCCTGGCCTACATATTATTTATAAAACATAATATTTGATATTTGTTGACC
TGGATTTGCTActctatcaatttttttttaatacgaaATAAAATCCGTTT
ACTTTAgatcaaaataaagttttttatcaatgtctTATTTCGTCAGGACA
TACGAAATGTTTGACAAcattcaaacaaattttttatCTGACTAAAGTCT
AAAGAAAAGagaatgtttttttgtaaaatctcgcTTTCATATTACACGTA
TGCACACGTAAAACAGTTATCACCTCATCTTAAACCTTTAGATATGTGAT
ACGTTTTAAAtaagtttcaaatttgtaaaatgTTCTATCCTATCTGTCGA
GCTCTCTTGTTTTAACAACAACGACAACACAACTTCAAAAACacacaaat
aattttttcctcTCCTCTCTAATATCTTTTCTCTTCTCTCCCTCTTACAG
CCGTAACGTAGTTACGag Run BLAST on NCBI protein sequence of TCONS_00071815-protein >TCONS_00071815-protein ID=TCONS_00071815-protein|Name=TCONS_00071815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MMRSGSSNSNNVQQNSTTSSQHHHLQQHQQQHQQRKEHGNPSQQTIQLLK
KQNAQMRQQISEQDQRELTLMETIRQLQATVENQNKRFEEFRSDVMEEFK
SLKEQFSKVTLIEGASCPPSNPSRAPSPAPSESKQEADEDECMSPPTSPQ
PQENAESANNTVAVSKRNLFSLIKENRKYIDQLDLRLQLQDNTYYNGRIL
WRIEHFKSRRRQVLNGSINALHSAPSYTKSQEGYKFCLRMYPNGDGAGLG
THLSVFLVIMKSEYDNLLVWPFNHSVKFTLINQLNRSKDLIEKMAPEKSS
ASFQKPTKEMNVASGCPMFAHQACLEQDGYLVDDTLFLEVCVEQG Run BLAST on NCBI transcript from alignment at scaffold_63:552414..554731 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071815 ID=TCONS_00071815|Name=TCONS_00071815|organism=Clytia hemisphaerica|type=transcript|length=2318bp|location=Sequence derived from alignment at scaffold_63:552414..554731 (Clytia hemisphaerica)
ctCGTAACTACGTTACGGCTGTAAGAGGGAGAGAAGAGAAAAGATATTAG
AGAGGAgaggaaaaaattatttgtgtGTTTTTGAAGTTGTGTTGTCGTTG
TTGTTAAAACAAGAGAGCTCGACAGATAGGATAGAAcattttacaaattt
gaaacttaTTTAAAACGTATCACATATCTAAAGGTTTAAGATGAGGTGAT
AACTGTTTTACGTGTGCATACGTGTAATATGAAAgcgagattttacaaaa
aaacattctCTTTTCTTTAGACTTTAGTCAGataaaaaatttgtttgaat
gTTGTCAAACATTTCGTATGTCCTGACGAAATAagacattgataaaaaac
tttattttgatcTAAAGTAAACGGATTTTATttcgtattaaaaaaaaatt
gatagagTAGCAAATCCAGGTCAACAAATATCAAATATTATGTTTTATAA
ATAATATGTAGGCCAGGGTAGAACATCAATCAAAGTAGTGTCATTTCGAC
AAAAGACTCCTCAGCCTCTATATTGTATATaatgtttcgttttttttatt
ctagcaagaaaaatatgcaaaaatagtttgaaatcATGATGCGTTCAGGT
AGCAGTAATTCCAACAACGTTCAACAAAATTCTACGACAAGTTCACAACA
CCATCACCTACAACAGCATCAACAACAACACCAACAACGAAAAGAACACG
GCAATCCTTCACAACAAACCATACAACTgttgaaaaaacaaaatgcaCAG
ATGAGACAACAAATTTCCGAACAAGACCAACGCGAACTTACATTAATGGA
AACCATACGACAACTCCAGGCAACTGtcgaaaaccaaaacaaaagatTCG
AAGAATTTCGAAGTGACGTCATGGAAGAGTTCAAATCactaaaagaacaa
ttttcaaaagtcaCCTTAATAGAAGGTGCATCTTGTCCGCCTAGTAACCC
CTCGCGGGCGCCTTCACCCGCCCCTTCAGAAAGCAAACAAGAGGCGGACG
AGGACGAATGCATGTCTCCACCAACGTCACCACAGCCTCAAGAAAACGCA
GAATCAGCCAATAATACTGTAGCAGTATCAAAACGAAACCTCTTCTCact
aatcaaagaaaatcgaaaatataTCGACCAGCTCGATTTACGTCTACAAC
TTCAAGACAATACGTATTACAACGGGCGTATTCTATGGCGCATAGAACAT
TTTAAATCGCGAAGACGACAAGTTTTGAATGGGAGCATTAACGCTTTACA
TAGCGCGCCTAGTTATACGAAATCACAAGAAGGCTACAAATTCTGTTTAA
GAATGTACCCTAATGGAGATGGTGCAGGACTTGGAACACACCTTTCAGTC
TTTCTAGTAATCATGAAGAGTGAATATGATAATTTACTTGTATGGCCGTT
TAACCATTCTGTTAAATTCACATTGATAAATCAGTTGAACAGATCAAAAG
ACTTGATAGAGAAAATGGCACCAGAAAAGAGCTCAGCTAGCTTTCAAAAG
CCAACTAAAGAAATGAACGTGGCTTCTGGATGTCCTATGTTTGCTCACCA
GGCTTGCTTGGAACAGGATGGTTATTTAGTTGATGATACCCTTTTTCTTG
AGGTTTGTGTGGAACAGGGTTGAATAGTATTAAAGATAAAGATTGTTGAA
CAACACATGACCTATAATACCTCTTTTTAGATAGAAccggaaaattttgt
gaaaaagacacacatacataaacacagaaaaaaaacaataacaaagttAA
TTGTGTTTTGATAATACAAGATTCTTAAAAAAGTTGACATGACCCTGGGT
GGTTTATTTTAAAAAGGTAAAAAGCATATTGATTATGTGATTTAtcataa
tttttgatttgatctCAAAACCATCTTATCGTGTTAGAATTTTGTGGGAG
AAACAAATATACTATCGAAATCAGTTGTATCTGGATGTTATCGGAACAAA
CTTTCGGGAGTTTCCACAACCCCAGTATCTTGACATTCAGTTtcgttgtt
tgtttttttcgtaaaagaaatcttgtttttttatttattgtcaTAATAAT
TCTATAATAGACCTCCTTTAGCttgtatatattattttttttaaaccttg
aaaaaaaaacaattcctaaatttttgtaatattttttgaaagagtTAAAA
AGTACAAATTACTTACtaagaaagaataaaaaatttatactatcttgaaa
aattcgaaaattcatTTGTTACAATCATCATTTCATAGAAACAAGAAATA
TATTGTCGATGTTCGGCTGTTCTTTGTGACATTGAGCTTTAAATTGTTCT
CATCCTGTTCTTATTCCT Coding sequence (CDS) from alignment at scaffold_63:552414..554731 >TCONS_00071815 ID=TCONS_00071815|Name=TCONS_00071815|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_63:552414..554731 (Clytia hemisphaerica)
ATGATGCGTTCAGGTAGCAGTAATTCCAACAACGTTCAACAAAATTCTAC
GACAAGTTCACAACACCATCACCTACAACAGCATCAACAACAACACCAAC
AACGAAAAGAACACGGCAATCCTTCACAACAAACCATACAACTgttgaaa
aaacaaaatgcaCAGATGAGACAACAAATTTCCGAACAAGACCAACGCGA
ACTTACATTAATGGAAACCATACGACAACTCCAGGCAACTGtcgaaaacc
aaaacaaaagatTCGAAGAATTTCGAAGTGACGTCATGGAAGAGTTCAAA
TCactaaaagaacaattttcaaaagtcaCCTTAATAGAAGGTGCATCTTG
TCCGCCTAGTAACCCCTCGCGGGCGCCTTCACCCGCCCCTTCAGAAAGCA
AACAAGAGGCGGACGAGGACGAATGCATGTCTCCACCAACGTCACCACAG
CCTCAAGAAAACGCAGAATCAGCCAATAATACTGTAGCAGTATCAAAACG
AAACCTCTTCTCactaatcaaagaaaatcgaaaatataTCGACCAGCTCG
ATTTACGTCTACAACTTCAAGACAATACGTATTACAACGGGCGTATTCTA
TGGCGCATAGAACATTTTAAATCGCGAAGACGACAAGTTTTGAATGGGAG
CATTAACGCTTTACATAGCGCGCCTAGTTATACGAAATCACAAGAAGGCT
ACAAATTCTGTTTAAGAATGTACCCTAATGGAGATGGTGCAGGACTTGGA
ACACACCTTTCAGTCTTTCTAGTAATCATGAAGAGTGAATATGATAATTT
ACTTGTATGGCCGTTTAACCATTCTGTTAAATTCACATTGATAAATCAGT
TGAACAGATCAAAAGACTTGATAGAGAAAATGGCACCAGAAAAGAGCTCA
GCTAGCTTTCAAAAGCCAACTAAAGAAATGAACGTGGCTTCTGGATGTCC
TATGTTTGCTCACCAGGCTTGCTTGGAACAGGATGGTTATTTAGTTGATG
ATACCCTTTTTCTTGAGGTTTGTGTGGAACAGGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071815-exon-scaffold_63-1491911889:552414..554731 | TCONS_00071815-exon-scaffold_63-1491911889:552414..554731 | Clytia hemisphaerica | exon |
| TCONS_00071815-exon-scaffold_63-1510915933:552414..554731 | TCONS_00071815-exon-scaffold_63-1510915933:552414..554731 | Clytia hemisphaerica | exon |
| TCONS_00071815-exon-scaffold_63-1575043694:552414..554731 | TCONS_00071815-exon-scaffold_63-1575043694:552414..554731 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:552414..554731 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00071815 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 6.551e-41 Identity = 71/149 (47.65%), Postives = 100/149 (67.11%), Query Frame = -1 Query: 705 YNGRILWRIEHFKSRRRQVLNGSINALHSAPSYTKSQEGYKFCLRMYPNGDGAGLGTHLSVFLVIMKSEYDNLLVWPFNHSVKFTLINQLNRSKDLIEKMAPEKSSASFQKPTKEMNVASGCPMFAHQACLEQDGYLVDDTLFLEVCVE 1151
YNG ++W+I +K R+++ + G +L+S P YT GYK C R+Y NGDG G GTHLS+F VIM+ EYD LL WPF V L++Q + + L + P+ +S+SF+KPT EMN+ASGCP+F Q LE Y+ DDT+F++V V+
Sbjct: 414 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYT-GYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
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