TCONS_00071815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071815
Unique NameTCONS_00071815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071815 ID=TCONS_00071815|Name=TCONS_00071815|organism=Clytia hemisphaerica|type=transcript|length=2318bp
AGGAATAAGAACAGGATGAGAACAATTTAAAGCTCAATGTCACAAAGAAC
AGCCGAACATCGACAATATATTTCTTGTTTCTATGAAATGATGATTGTAA
CAAatgaattttcgaatttttcaagatagtataaattttttattctttct
taGTAAGTAATTTGTACTTTTTAactctttcaaaaaatattacaaaaatt
taggaattgtttttttttcaaggtttaaaaaaaataatatatacaaGCTA
AAGGAGGTCTATTATAGAATTATTAtgacaataaataaaaaaacaagatt
tcttttacgaaaaaaacaaacaacgaAACTGAATGTCAAGATACTGGGGT
TGTGGAAACTCCCGAAAGTTTGTTCCGATAACATCCAGATACAACTGATT
TCGATAGTATATTTGTTTCTCCCACAAAATTCTAACACGATAAGATGGTT
TTGagatcaaatcaaaaattatgaTAAATCACATAATCAATATGCTTTTT
ACCTTTTTAAAATAAACCACCCAGGGTCATGTCAACTTTTTTAAGAATCT
TGTATTATCAAAACACAATTaactttgttattgttttttttctgtgttta
tgtatgtgtgtctttttcacaaaattttccggTTCTATCTAAAAAGAGGT
ATTATAGGTCATGTGTTGTTCAACAATCTTTATCTTTAATACTATTCAAC
CCTGTTCCACACAAACCTCAAGAAAAAGGGTATCATCAACTAAATAACCA
TCCTGTTCCAAGCAAGCCTGGTGAGCAAACATAGGACATCCAGAAGCCAC
GTTCATTTCTTTAGTTGGCTTTTGAAAGCTAGCTGAGCTCTTTTCTGGTG
CCATTTTCTCTATCAAGTCTTTTGATCTGTTCAACTGATTTATCAATGTG
AATTTAACAGAATGGTTAAACGGCCATACAAGTAAATTATCATATTCACT
CTTCATGATTACTAGAAAGACTGAAAGGTGTGTTCCAAGTCCTGCACCAT
CTCCATTAGGGTACATTCTTAAACAGAATTTGTAGCCTTCTTGTGATTTC
GTATAACTAGGCGCGCTATGTAAAGCGTTAATGCTCCCATTCAAAACTTG
TCGTCTTCGCGATTTAAAATGTTCTATGCGCCATAGAATACGCCCGTTGT
AATACGTATTGTCTTGAAGTTGTAGACGTAAATCGAGCTGGTCGAtatat
tttcgattttctttgattagtGAGAAGAGGTTTCGTTTTGATACTGCTAC
AGTATTATTGGCTGATTCTGCGTTTTCTTGAGGCTGTGGTGACGTTGGTG
GAGACATGCATTCGTCCTCGTCCGCCTCTTGTTTGCTTTCTGAAGGGGCG
GGTGAAGGCGCCCGCGAGGGGTTACTAGGCGGACAAGATGCACCTTCTAT
TAAGGtgacttttgaaaattgttcttttagtGATTTGAACTCTTCCATGA
CGTCACTTCGAAATTCTTCGAatcttttgttttggttttcgaCAGTTGCC
TGGAGTTGTCGTATGGTTTCCATTAATGTAAGTTCGCGTTGGTCTTGTTC
GGAAATTTGTTGTCTCATCTGtgcattttgttttttcaacAGTTGTATGG
TTTGTTGTGAAGGATTGCCGTGTTCTTTTCGTTGTTGGTGTTGTTGTTGA
TGCTGTTGTAGGTGATGGTGTTGTGAACTTGTCGTAGAATTTTGTTGAAC
GTTGTTGGAATTACTGCTACCTGAACGCATCATgatttcaaactattttt
gcatatttttcttgctagaataaaaaaaacgaaacattATATACAATATA
GAGGCTGAGGAGTCTTTTGTCGAAATGACACTACTTTGATTGATGTTCTA
CCCTGGCCTACATATTATTTATAAAACATAATATTTGATATTTGTTGACC
TGGATTTGCTActctatcaatttttttttaatacgaaATAAAATCCGTTT
ACTTTAgatcaaaataaagttttttatcaatgtctTATTTCGTCAGGACA
TACGAAATGTTTGACAAcattcaaacaaattttttatCTGACTAAAGTCT
AAAGAAAAGagaatgtttttttgtaaaatctcgcTTTCATATTACACGTA
TGCACACGTAAAACAGTTATCACCTCATCTTAAACCTTTAGATATGTGAT
ACGTTTTAAAtaagtttcaaatttgtaaaatgTTCTATCCTATCTGTCGA
GCTCTCTTGTTTTAACAACAACGACAACACAACTTCAAAAACacacaaat
aattttttcctcTCCTCTCTAATATCTTTTCTCTTCTCTCCCTCTTACAG
CCGTAACGTAGTTACGag
Run BLAST on NCBI

protein sequence of TCONS_00071815-protein

>TCONS_00071815-protein ID=TCONS_00071815-protein|Name=TCONS_00071815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MMRSGSSNSNNVQQNSTTSSQHHHLQQHQQQHQQRKEHGNPSQQTIQLLK
KQNAQMRQQISEQDQRELTLMETIRQLQATVENQNKRFEEFRSDVMEEFK
SLKEQFSKVTLIEGASCPPSNPSRAPSPAPSESKQEADEDECMSPPTSPQ
PQENAESANNTVAVSKRNLFSLIKENRKYIDQLDLRLQLQDNTYYNGRIL
WRIEHFKSRRRQVLNGSINALHSAPSYTKSQEGYKFCLRMYPNGDGAGLG
THLSVFLVIMKSEYDNLLVWPFNHSVKFTLINQLNRSKDLIEKMAPEKSS
ASFQKPTKEMNVASGCPMFAHQACLEQDGYLVDDTLFLEVCVEQG
Run BLAST on NCBI

transcript from alignment at scaffold_63:552414..554731

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071815 ID=TCONS_00071815|Name=TCONS_00071815|organism=Clytia hemisphaerica|type=transcript|length=2318bp|location=Sequence derived from alignment at scaffold_63:552414..554731 (Clytia hemisphaerica)
ctCGTAACTACGTTACGGCTGTAAGAGGGAGAGAAGAGAAAAGATATTAG
AGAGGAgaggaaaaaattatttgtgtGTTTTTGAAGTTGTGTTGTCGTTG
TTGTTAAAACAAGAGAGCTCGACAGATAGGATAGAAcattttacaaattt
gaaacttaTTTAAAACGTATCACATATCTAAAGGTTTAAGATGAGGTGAT
AACTGTTTTACGTGTGCATACGTGTAATATGAAAgcgagattttacaaaa
aaacattctCTTTTCTTTAGACTTTAGTCAGataaaaaatttgtttgaat
gTTGTCAAACATTTCGTATGTCCTGACGAAATAagacattgataaaaaac
tttattttgatcTAAAGTAAACGGATTTTATttcgtattaaaaaaaaatt
gatagagTAGCAAATCCAGGTCAACAAATATCAAATATTATGTTTTATAA
ATAATATGTAGGCCAGGGTAGAACATCAATCAAAGTAGTGTCATTTCGAC
AAAAGACTCCTCAGCCTCTATATTGTATATaatgtttcgttttttttatt
ctagcaagaaaaatatgcaaaaatagtttgaaatcATGATGCGTTCAGGT
AGCAGTAATTCCAACAACGTTCAACAAAATTCTACGACAAGTTCACAACA
CCATCACCTACAACAGCATCAACAACAACACCAACAACGAAAAGAACACG
GCAATCCTTCACAACAAACCATACAACTgttgaaaaaacaaaatgcaCAG
ATGAGACAACAAATTTCCGAACAAGACCAACGCGAACTTACATTAATGGA
AACCATACGACAACTCCAGGCAACTGtcgaaaaccaaaacaaaagatTCG
AAGAATTTCGAAGTGACGTCATGGAAGAGTTCAAATCactaaaagaacaa
ttttcaaaagtcaCCTTAATAGAAGGTGCATCTTGTCCGCCTAGTAACCC
CTCGCGGGCGCCTTCACCCGCCCCTTCAGAAAGCAAACAAGAGGCGGACG
AGGACGAATGCATGTCTCCACCAACGTCACCACAGCCTCAAGAAAACGCA
GAATCAGCCAATAATACTGTAGCAGTATCAAAACGAAACCTCTTCTCact
aatcaaagaaaatcgaaaatataTCGACCAGCTCGATTTACGTCTACAAC
TTCAAGACAATACGTATTACAACGGGCGTATTCTATGGCGCATAGAACAT
TTTAAATCGCGAAGACGACAAGTTTTGAATGGGAGCATTAACGCTTTACA
TAGCGCGCCTAGTTATACGAAATCACAAGAAGGCTACAAATTCTGTTTAA
GAATGTACCCTAATGGAGATGGTGCAGGACTTGGAACACACCTTTCAGTC
TTTCTAGTAATCATGAAGAGTGAATATGATAATTTACTTGTATGGCCGTT
TAACCATTCTGTTAAATTCACATTGATAAATCAGTTGAACAGATCAAAAG
ACTTGATAGAGAAAATGGCACCAGAAAAGAGCTCAGCTAGCTTTCAAAAG
CCAACTAAAGAAATGAACGTGGCTTCTGGATGTCCTATGTTTGCTCACCA
GGCTTGCTTGGAACAGGATGGTTATTTAGTTGATGATACCCTTTTTCTTG
AGGTTTGTGTGGAACAGGGTTGAATAGTATTAAAGATAAAGATTGTTGAA
CAACACATGACCTATAATACCTCTTTTTAGATAGAAccggaaaattttgt
gaaaaagacacacatacataaacacagaaaaaaaacaataacaaagttAA
TTGTGTTTTGATAATACAAGATTCTTAAAAAAGTTGACATGACCCTGGGT
GGTTTATTTTAAAAAGGTAAAAAGCATATTGATTATGTGATTTAtcataa
tttttgatttgatctCAAAACCATCTTATCGTGTTAGAATTTTGTGGGAG
AAACAAATATACTATCGAAATCAGTTGTATCTGGATGTTATCGGAACAAA
CTTTCGGGAGTTTCCACAACCCCAGTATCTTGACATTCAGTTtcgttgtt
tgtttttttcgtaaaagaaatcttgtttttttatttattgtcaTAATAAT
TCTATAATAGACCTCCTTTAGCttgtatatattattttttttaaaccttg
aaaaaaaaacaattcctaaatttttgtaatattttttgaaagagtTAAAA
AGTACAAATTACTTACtaagaaagaataaaaaatttatactatcttgaaa
aattcgaaaattcatTTGTTACAATCATCATTTCATAGAAACAAGAAATA
TATTGTCGATGTTCGGCTGTTCTTTGTGACATTGAGCTTTAAATTGTTCT
CATCCTGTTCTTATTCCT

Coding sequence (CDS) from alignment at scaffold_63:552414..554731

>TCONS_00071815 ID=TCONS_00071815|Name=TCONS_00071815|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_63:552414..554731 (Clytia hemisphaerica)
ATGATGCGTTCAGGTAGCAGTAATTCCAACAACGTTCAACAAAATTCTAC
GACAAGTTCACAACACCATCACCTACAACAGCATCAACAACAACACCAAC
AACGAAAAGAACACGGCAATCCTTCACAACAAACCATACAACTgttgaaa
aaacaaaatgcaCAGATGAGACAACAAATTTCCGAACAAGACCAACGCGA
ACTTACATTAATGGAAACCATACGACAACTCCAGGCAACTGtcgaaaacc
aaaacaaaagatTCGAAGAATTTCGAAGTGACGTCATGGAAGAGTTCAAA
TCactaaaagaacaattttcaaaagtcaCCTTAATAGAAGGTGCATCTTG
TCCGCCTAGTAACCCCTCGCGGGCGCCTTCACCCGCCCCTTCAGAAAGCA
AACAAGAGGCGGACGAGGACGAATGCATGTCTCCACCAACGTCACCACAG
CCTCAAGAAAACGCAGAATCAGCCAATAATACTGTAGCAGTATCAAAACG
AAACCTCTTCTCactaatcaaagaaaatcgaaaatataTCGACCAGCTCG
ATTTACGTCTACAACTTCAAGACAATACGTATTACAACGGGCGTATTCTA
TGGCGCATAGAACATTTTAAATCGCGAAGACGACAAGTTTTGAATGGGAG
CATTAACGCTTTACATAGCGCGCCTAGTTATACGAAATCACAAGAAGGCT
ACAAATTCTGTTTAAGAATGTACCCTAATGGAGATGGTGCAGGACTTGGA
ACACACCTTTCAGTCTTTCTAGTAATCATGAAGAGTGAATATGATAATTT
ACTTGTATGGCCGTTTAACCATTCTGTTAAATTCACATTGATAAATCAGT
TGAACAGATCAAAAGACTTGATAGAGAAAATGGCACCAGAAAAGAGCTCA
GCTAGCTTTCAAAAGCCAACTAAAGAAATGAACGTGGCTTCTGGATGTCC
TATGTTTGCTCACCAGGCTTGCTTGGAACAGGATGGTTATTTAGTTGATG
ATACCCTTTTTCTTGAGGTTTGTGTGGAACAGGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044583XLOC_044583Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071815-proteinTCONS_00071815-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071815-exon-scaffold_63-1491911889:552414..554731TCONS_00071815-exon-scaffold_63-1491911889:552414..554731Clytia hemisphaericaexon
TCONS_00071815-exon-scaffold_63-1510915933:552414..554731TCONS_00071815-exon-scaffold_63-1510915933:552414..554731Clytia hemisphaericaexon
TCONS_00071815-exon-scaffold_63-1575043694:552414..554731TCONS_00071815-exon-scaffold_63-1575043694:552414..554731Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:552414..554731 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0164042	0.0190468	0.0745373	25.9295	20.5974	38.0426	43.309	27.926	66.6357	39.2841	78.5919	72.43	70.0141	68.2595	67.6149	26.9487	71.9792	47.5489	62.6306	16.5573	27.6316	5.13057	9.18858	20.6077	24.2915	556.638	549.626	13.9474	9.60661
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00071815 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 6.551e-41
Identity = 71/149 (47.65%), Postives = 100/149 (67.11%), Query Frame = -1 
Query:  705 YNGRILWRIEHFKSRRRQVLNGSINALHSAPSYTKSQEGYKFCLRMYPNGDGAGLGTHLSVFLVIMKSEYDNLLVWPFNHSVKFTLINQLNRSKDLIEKMAPEKSSASFQKPTKEMNVASGCPMFAHQACLEQDGYLVDDTLFLEVCVE 1151
            YNG ++W+I  +K R+++ + G   +L+S P YT    GYK C R+Y NGDG G GTHLS+F VIM+ EYD LL WPF   V   L++Q +  + L +   P+ +S+SF+KPT EMN+ASGCP+F  Q  LE   Y+ DDT+F++V V+
Sbjct:  414 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYT-GYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
BLAST of TCONS_00071815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF36.551e-4147.65TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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