Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00071815-protein ID=TCONS_00071815-protein|Name=TCONS_00071815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MMRSGSSNSNNVQQNSTTSSQHHHLQQHQQQHQQRKEHGNPSQQTIQLLK
KQNAQMRQQISEQDQRELTLMETIRQLQATVENQNKRFEEFRSDVMEEFK
SLKEQFSKVTLIEGASCPPSNPSRAPSPAPSESKQEADEDECMSPPTSPQ
PQENAESANNTVAVSKRNLFSLIKENRKYIDQLDLRLQLQDNTYYNGRIL
WRIEHFKSRRRQVLNGSINALHSAPSYTKSQEGYKFCLRMYPNGDGAGLG
THLSVFLVIMKSEYDNLLVWPFNHSVKFTLINQLNRSKDLIEKMAPEKSS
ASFQKPTKEMNVASGCPMFAHQACLEQDGYLVDDTLFLEVCVEQG Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 74..94 |
| None | No IPR available | COILS | Coil | Coil | coord: 46..66 |
| None | No IPR available | GENE3D | 1.20.5.50 | | coord: 6..141
e-value: 5.6E-5
score: 22.4 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 113..161 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..62 |
| IPR002083 | MATH/TRAF domain | SMART | SM00061 | math_3 | coord: 201..325
e-value: 4.2E-7
score: 39.6 |
| IPR002083 | MATH/TRAF domain | PROSITE | PS50144 | MATH | coord: 196..342
score: 17.706 |
| IPR008974 | TRAF-like | GENE3D | 2.60.210.10 | | coord: 176..344
e-value: 3.0E-32
score: 111.3 |
| IPR008974 | TRAF-like | SUPERFAMILY | 49599 | TRAF domain-like | coord: 195..342 |
Blast
BLAST of TCONS_00071815-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 169.088 bits (427), Expect = 8.905e-48 Identity = 75/161 (46.58%), Postives = 107/161 (66.46%), Query Frame = 0 Query: 183 LDLRLQLQDNTYYNGRILWRIEHFKSRRRQVLNGSINALHSAPSYTKSQEGYKFCLRMYPNGDGAGLGTHLSVFLVIMKSEYDNLLVWPFNHSVKFTLINQLNRSKDLIEKMAPEKSSASFQKPTKEMNVASGCPMFAHQACLEQDGYLVDDTLFLEVCVE 343
+DLR Q+ + YNG ++W+I +K R+++ + G +L+S P YT GYK C R+Y NGDG G GTHLS+F VIM+ EYD LL WPF V L++Q + + L + P+ +S+SF+KPT EMN+ASGCP+F Q LE Y+ DDT+F++V V+
Sbjct: 402 MDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYT-GYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
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