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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071770 ID=TCONS_00071770|Name=TCONS_00071770|organism=Clytia hemisphaerica|type=transcript|length=2187bpRun BLAST on NCBI transcript from alignment at scaffold_63:958179..980857- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071770 ID=TCONS_00071770|Name=TCONS_00071770|organism=Clytia hemisphaerica|type=transcript|length=22679bp|location=Sequence derived from alignment at scaffold_63:958179..980857- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071770 vs. Swiss-Prot (Human)
Match: MOCS1 (Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3) HSP 1 Score: 446.817 bits (1148), Expect = 1.224e-146 Identity = 196/326 (60.12%), Postives = 264/326 (80.98%), Query Frame = 2
Query: 143 SSPLTDTFGRFHNYLRISLSERCNLRCQYCMPEEGIELTKSSKLLSTEEVIYLTQIFAKHGVEKVRLTGGEPLLRKDIAEICERISAIDGIKSIGLTTNGITGKRHFQKLSDAGLTHVNISLDTLIPEKFEFVSRRRGHHKVMESIDRALDLPFHSVKVNCVVMKGLNEDEILPFVDFTKDKKVDIRFIEYMPFDGNKWNIQKFYPYQEMLKDISQKYPTLYKIEDDKNDTSKAYKVPNFEGQIGFITSMSQNFCGTCNRLRITADGNLKACLFGPNEISLRDMMRSGASEEELTQIISGAVKKKKKQHAGMFEIAKTKNRSMILI 1120
S+ LTD+FGR H+YLRISL+E+CNLRCQYCMPEEG+ LT + LL+TEE++ L ++F K G++K+RLTGGEPL+R D+ +I ++ ++G+++IG+TTNGI R +L AGL+ +NISLDTL+P KFEF+ RR+G HKVME I +A++L ++ VKVNCVVM+GLNEDE+L F T+ +D+RFIEYMPFDGNKWN +K Y+EML + Q++P L K+ ++++ T+KA+K+P F+GQI FITSMS++FCGTCNRLRITADGNLK CLFG +E+SLRD +R+GASE+EL +II AV +KK+QHAGMF I++ KNR MILI
Sbjct: 58 SAFLTDSFGRQHSYLRISLTEKCNLRCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIRLTGGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNGINLARLLPQLQKAGLSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAIELGYNPVKVNCVVMRGLNEDELLDFAALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEMLDTVRQQWPELEKVPEEESSTAKAFKIPGFQGQISFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVSLRDHLRAGASEQELLRIIGAAVGRKKRQHAGMFSISQMKNRPMILI 383 HSP 2 Score: 137.117 bits (344), Expect = 1.329e-33 Identity = 77/157 (49.04%), Postives = 113/157 (71.97%), Query Frame = 1
Query: 1351 NSKLTHVGDDGKLKMVDVGSKTVTKRTAIASGVVQLNTEIIQLIKENSIKKGDVITVAKVAGIMAAKRTDQTIPLCHNIALSSVNIDIDVEG-ECGLRIRAVTIAGDKTGVEMEXXXXXXXXXXXXYDMCKALSHDIVIKDIRLEQKTGG-KSDYMR 1815
+ +LTHV +G+ MVDVG K T+R A+AS VV L +L+++N +KKGD + VA++AG+ AAK T Q IPLCH++ALS + + ++++ ++I+A A TGVEMEALT+ +VAALT+YDMCKA+S DIV+++I+L KTGG + D+ R
Sbjct: 479 SEQLTHVDSEGRAAMVDVGRKPDTERVAVASAVVLLGPVAFKLVQQNQLKKGDALVVAQLAGVQAAKVTSQLIPLCHHVALSHIQVQLELDSTRHAVKIQASCRARGPTGVEMEALTSAAVAALTLYDMCKAVSRDIVLEEIKLISKTGGQRGDFHR 635 The following BLAST results are available for this feature:
BLAST of TCONS_00071770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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