TCONS_00071749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071749
Unique NameTCONS_00071749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2038

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071749 ID=TCONS_00071749|Name=TCONS_00071749|organism=Clytia hemisphaerica|type=transcript|length=2038bp
CAACGAAAAACAACACGGGCTCTTGAAAAGGCGAAGGAGCTAATATCGTT
ATTTATGTTGATTGAGAGAGAGGGAGAGAGGATAATTTGTTAACAGGAAG
CAACATTCTAGTGCTTATTAATCACTTAGCGGTCTATAATAATAAAAGGA
TTTTGTTGTCATTCAAATAAAGCATATAATGCCATCACTAATTGAAAAAG
GACAGTTTACGTTTAAACAAATGTTGCTACAGTTTCAAATTGCGATGAAT
CGAGCTAGGTACGGACGTCTTGATGGTAGTAAATCTCGCGATGAAATTAT
CAGCGAGGCTCAAATCTTATCTAACGATTACATGGACGACAGGTTGATAC
GGTCTGGATTAAATTTCAAACAGAGAAAAATATCACAATCGACTAAACAC
CTTCTTAAAGGACAGAAAGGGGGATCGAATTCAAAATCAGTTGACGAGTT
ATATCCCAATTCCAACCGTTTAAACTCAATGGCGAAAAGTGAAAAAGCGG
CAACGATAGAAGCTGTACGAATTATGGCAGAAAAACGGCACTCTCCGAAT
GGCTGTTTATTAACGATGGATGATTTGTCAAAGGTTTTAATGTACGTTGG
AGAAGCTTTAGAAGTTAAACATCCGACTGTTTATACCGAAATCTTACAAC
AACTCAATGTGAGGTCTTCATTAGCTGATGTAAATTTGAAACGTATTTTT
TTGAATGTGGCAAAAGAGTTGTTTGCTGAAGGTATCAACTGGCCAAAAAT
TGTTTCGTTTTTTGCTTTCGCTGGTGGGTTGGCTGTTGATTGTGTTTTAA
ATGGTTCTAGTATTCATGTTACTCGAATTAAAACTTGGACTGTTGAATTT
ATTGAACACGATTTGGTGGATTGGATTTTACACCAAGGAGGCTGGGTTGG
CTTATTTGATCATTTCACGGCCCATCACCAACCGAAAATTATACAAAACT
GTGCATGGACAATTTCAGCATTTGTATTACTATTTTCAGTACTTCTTGCG
GCACTAATGGCttacattttaaaactttcttgagCTGGTTGGTATAACgt
aaagataaaaattatttgGGGAAGAGTGGATAACGTTACTCAAGGTAGCA
CCCACGGACAACATTGATTAAAATAGCTACCCGAATCTAAACAGAACACT
GAAAAAGCCATATAAACATGTTTTCAAAGTAAAGAGACAAATATTATGAT
TGAGATTTTAAACCACATATATGTGGTATGGTATATCAAGGACAGACATA
TTTCAACTAAAGGCTTATCAAATAGCAGAAGAAATACGTAGACGTAACAA
ATTTGCCATAAAGAGGGATATATAGTAGAATCGGATTTCATGACTGATGC
TCGATGCTGCGAGAGGAATATGACAATAAAAACATCAGCCAATGCTACAA
ACTCAtgtgtaaaaaatataaaaggtTTCAAATTGTACATATTAAAACGT
AATTGATATTATTTTATACAACTGagtcaaaaaatggaaattgatttaaa
aatacaaaagtaggacgataaaacaaaacaagagacgtctataaaaatat
aaacatgaCGAAATGTTCGAAAATTTAAACACAACTCGTTTCATTGTTGA
CTTTAACATGTTATTGATTTTCCTTTTGAACCAACAAATTATTGTTTCTC
AACCCATTCTGGGGAAAGAGACTTGTGCTTTTTTGTCTGTCGCGTCATCT
TCACGCCATAAACTTGTGACAGTCTTCCATTGCGAGTAGAATTGGACTCC
CTGGAAAAGCAAAATTAAAGGTTGAGTACTTAAAGTATATAAAAGATCAG
GTCGATTCTACCAAACAATTTTGTCTAGTTTCGATgcggcttcgatggcc
aaaatcttaagaacaagttaagaacatttgaaggcttcgtggactcgaaa
acaccccaACACTCAATACTTTCACTGAAATCTATTCCGATATTTGATAT
AGcttgtactctcgggtacctaatagccgtcccccccccgctaattaatt
tttcgaaaattttccacccaggacattcttattccaac
Run BLAST on NCBI

protein sequence of TCONS_00071749-protein

>TCONS_00071749-protein ID=TCONS_00071749-protein|Name=TCONS_00071749-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MPSLIEKGQFTFKQMLLQFQIAMNRARYGRLDGSKSRDEIISEAQILSND
YMDDRLIRSGLNFKQRKISQSTKHLLKGQKGGSNSKSVDELYPNSNRLNS
MAKSEKAATIEAVRIMAEKRHSPNGCLLTMDDLSKVLMYVGEALEVKHPT
VYTEILQQLNVRSSLADVNLKRIFLNVAKELFAEGINWPKIVSFFAFAGG
LAVDCVLNGSSIHVTRIKTWTVEFIEHDLVDWILHQGGWVGLFDHFTAHH
QPKIIQNCAWTISAFVLLFSVLLAALMAYILKLS
Run BLAST on NCBI

transcript from alignment at scaffold_63:784177..786412-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071749 ID=TCONS_00071749|Name=TCONS_00071749|organism=Clytia hemisphaerica|type=transcript|length=2236bp|location=Sequence derived from alignment at scaffold_63:784177..786412- (Clytia hemisphaerica)
CAACGAAAAACAACACGGGCTCTTGAAAAGGCGAAGGAGCTAATATCGTT
ATTTATGTTGATTGAGAGAGAGGGAGAGAGGATAATTTGTTAACAGGAAG
CAACATTCTAGTGCTTATTAATCACTTAGCGGTCTATAATAATAAAAGGA
TTTTGTTGTCATTCAAATAAAGCATATAATGCCATCACTAATTGAAAAAG
GACAGTTTACGTTTAAACAAATGTTGCTACAGTTTCAAATTGCGATGAAT
CGAGCTAGGTACGGACGTCTTGATGGTAGTAAATCTCGCGATGAAATTAT
CAGCGAGGCTCAAATCTTATCTAACGATTACATGGACGACAGGTTGATAC
GGTCTGGATTAAATTTCAAACAGAGAAAAATATCACAATCGACTAAACAC
CTTCTTAAAGGACAGAAAGGGGGATCGAATTCAAAATCAGTTGACGAGTT
ATATCCCAATTCCAACCGTTTAAACTCAATGGCGAAAAGTGAAAAAGCGG
CAACGATAGAAGCTGTACGAATTATGGCAGAAAAACGGCACTCTCCGAAT
GGCTGTTTATTAACGATGGATGATTTGTCAAAGGTTTTAATGTACGTTGG
AGAAGCTTTAGAAGTTAAACATCCGACTGTTTATACCGAAATCTTACAAC
AACTCAATGTGAGGTCTTCATTAGCTGATGTAAATTTGAAACGTATTTTT
TTGAATGTGGCAAAAGAGTTGTTTGCTGAAGGTATCAACTGGCCAAAAAT
TGTTTCGTTTTTTGCTTTCGCTGGTGGGTTGGCTGTTGATTGTGTTTTAA
ATGGTTCTAGTATTCATGTTACTCGAATTAAAACTTGGACTGTTGAATTT
ATTGAACACGATTTGGTGGATTGGATTTTACACCAAGGAGGCTGGGTAAA
CTAATCTAGAATCTAATTATTTACTTGCATAATCTTTATATGAGCTATCA
GAAGACACGAATATTATCATCCATAGACGATCTTTAATTTACCAAGATTA
CAATGATTTGATGTCAAGTATTTTAAAAAGCTTAAAGAAGATTAGGATGA
TCGTCATTTTTGATATTTTTCTATACTTTCTCGTTCTTTCTAGGTTGGCT
TATTTGATCATTTCACGGCCCATCACCAACCGAAAATTATACAAAACTGT
GCATGGACAATTTCAGCATTTGTATTACTATTTTCAGTACTTCTTGCGGC
ACTAATGGCTTACATTTTAAAACTTTCTTGAGCTGGTTGGTATAACGTAA
AGATAAAAATTATTTGGGGAAGAGTGGATAACGTTACTCAAGGTAGCACC
CACGGACAACATTGATTAAAATAGCTACCCGAATCTAAACAGAACACTGA
AAAAGCCATATAAACATGTTTTCAAAGTAAAGAGACAAATATTATGATTG
AGATTTTAAACCACATATATGTGGTATGGTATATCAAGGACAGACATATT
TCAACTAAAGGCTTATCAAATAGCAGAAGAAATACGTAGACGTAACAAAT
TTGCCATAAAGAGGGATATATAGTAGAATCGGATTTCATGACTGATGCTC
GATGCTGCGAGAGGAATATGACAATAAAAACATCAGCCAATGCTACAAAC
TCATGTGTAAAAAATATAAAAGGTTTCAAATTGTACATATTAAAACGTAA
TTGATATTATTTTATACAACTGAGTCAAAAAATGGAAATTGATTTAAAAA
TACAAAAGTAGGACGATAAAACAAAACAAGAGACGTCTATAAAAATATAA
ACATGACGAAATGTTCGAAAATTTAAACACAACTCGTTTCATTGTTGACT
TTAACATGTTATTGATTTTCCTTTTGAACCAACAAATTATTGTTTCTCAA
CCCATTCTGGGGAAAGAGACTTGTGCTTTTTTGTCTGTCGCGTCATCTTC
ACGCCATAAACTTGTGACAGTCTTCCATTGCGAGTAGAATTGGACTCCCT
GGAAAAGCAAAATTAAAGGTTGAGTACTTAAAGTATATAAAAGATCAGGT
CGATTCTACCAAACAATTTTGTCTAGTTTCGATGCGGCTTCGATGGCCAA
AATCTTAAGAACAAGTTAAGAACATTTGAAGGCTTCGTGGACTCGAAAAC
ACCCCAACACTCAATACTTTCACTGAAATCTATTCCGATATTTGATATAG
CTTGTACTCTCGGGTACCTAATAGCCGTCCCCCCCCCGCTAATTAATTTT
TCGAAAATTTTCCACCCAGGACATTCTTATTCCAAC

Coding sequence (CDS) from alignment at scaffold_63:784177..786412-

>TCONS_00071749 ID=TCONS_00071749|Name=TCONS_00071749|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_63:784177..786412- (Clytia hemisphaerica)
GTTGGCTTATTTGATCATTTCACGGCCCATCACCAACCGAAAATTATACA
AAACTGTGCATGGACAATTTCAGCATTTGTATTACTATTTTCAGTACTTC
TTGCGGCACTAATGGCTTACATTTTAAAACTTTCTTGAATGCCATCACTA
ATTGAAAAAGGACAGTTTACGTTTAAACAAATGTTGCTACAGTTTCAAAT
TGCGATGAATCGAGCTAGGTACGGACGTCTTGATGGTAGTAAATCTCGCG
ATGAAATTATCAGCGAGGCTCAAATCTTATCTAACGATTACATGGACGAC
AGGTTGATACGGTCTGGATTAAATTTCAAACAGAGAAAAATATCACAATC
GACTAAACACCTTCTTAAAGGACAGAAAGGGGGATCGAATTCAAAATCAG
TTGACGAGTTATATCCCAATTCCAACCGTTTAAACTCAATGGCGAAAAGT
GAAAAAGCGGCAACGATAGAAGCTGTACGAATTATGGCAGAAAAACGGCA
CTCTCCGAATGGCTGTTTATTAACGATGGATGATTTGTCAAAGGTTTTAA
TGTACGTTGGAGAAGCTTTAGAAGTTAAACATCCGACTGTTTATACCGAA
ATCTTACAACAACTCAATGTGAGGTCTTCATTAGCTGATGTAAATTTGAA
ACGTATTTTTTTGAATGTGGCAAAAGAGTTGTTTGCTGAAGGTATCAACT
GGCCAAAAATTGTTTCGTTTTTTGCTTTCGCTGGTGGGTTGGCTGTTGAT
TGTGTTTTAAATGGTTCTAGTATTCATGTTACTCGAATTAAAACTTGGAC
TGTTGAATTTATTGAACACGATTTGGTGGATTGGATTTTACACCAAGGAG
GCTGGGTTGGCTTATTTGATCATTTCACGGCCCATCACCAACCGAAAATT
ATACAAAACTGTGCATGGACAATTTCAGCATTTGTATTACTATTTTCAGT
ACTTCTTGCGGCACTAATGGCTTACATTTTAAAACTTTCTTGAATGCCAT
CACTAATTGAAAAAGGACAGTTTACGTTTAAACAAATGTTGCTACAGTTT
CAAATTGCGATGAATCGAGCTAGGTACGGACGTCTTGATGGTAGTAAATC
TCGCGATGAAATTATCAGCGAGGCTCAAATCTTATCTAACGATTACATGG
ACGACAGGTTGATACGGTCTGGATTAAATTTCAAACAGAGAAAAATATCA
CAATCGACTAAACACCTTCTTAAAGGACAGAAAGGGGGATCGAATTCAAA
ATCAGTTGACGAGTTATATCCCAATTCCAACCGTTTAAACTCAATGGCGA
AAAGTGAAAAAGCGGCAACGATAGAAGCTGTACGAATTATGGCAGAAAAA
CGGCACTCTCCGAATGGCTGTTTATTAACGATGGATGATTTGTCAAAGGT
TTTAATGTACGTTGGAGAAGCTTTAGAAGTTAAACATCCGACTGTTTATA
CCGAAATCTTACAACAACTCAATGTGAGGTCTTCATTAGCTGATGTAAAT
TTGAAACGTATTTTTTTGAATGTGGCAAAAGAGTTGTTTGCTGAAGGTAT
CAACTGGCCAAAAATTGTTTCGTTTTTTGCTTTCGCTGGTGGGTTGGCTG
TTGATTGTGTTTTAAATGGTTCTAGTATTCATGTTACTCGAATTAAAACT
TGGACTGTTGAATTTATTGAACACGATTTGGTGGATTGGATTTTACACCA
AGGAGGCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044556XLOC_044556Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071749-proteinTCONS_00071749-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071749-exon-scaffold_63-1575043694:785518..786412TCONS_00071749-exon-scaffold_63-1575043694:785518..786412Clytia hemisphaericaexon
TCONS_00071749-exon-scaffold_63-1575043694:784177..785319TCONS_00071749-exon-scaffold_63-1575043694:784177..785319Clytia hemisphaericaexon
TCONS_00071749-exon-scaffold_63-1510915933:785518..786412TCONS_00071749-exon-scaffold_63-1510915933:785518..786412Clytia hemisphaericaexon
TCONS_00071749-exon-scaffold_63-1510915933:784177..785319TCONS_00071749-exon-scaffold_63-1510915933:784177..785319Clytia hemisphaericaexon
TCONS_00071749-exon-scaffold_63-1491911889:785518..786412TCONS_00071749-exon-scaffold_63-1491911889:785518..786412Clytia hemisphaericaexon
TCONS_00071749-exon-scaffold_63-1491911889:784177..785319TCONS_00071749-exon-scaffold_63-1491911889:784177..785319Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:784177..786412 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.0189786 tpm) - - (1.72315 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.019453	0.0189786	0.0660762	0.193941	0.374389	0.254121	1.20394	1.72315	0.238924	0.307897	0.273898	0.144503	0.900935	0.686886	0.719674	0.376657	0.71422	0.779613	0.562252	0.57457	0.732418	0.889574	0.222096	0.178233	0.131248	0.257141	0.819755	0.324472	0.728594	0.502633
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR026298Blc2_fam
IPR020726Bcl2_BH2_motif_CS
IPR002475Bcl2-like
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
200400600800100012001400160018002000Sequence
Match NameE-valueIdentityDescription
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