TCONS_00071745 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071745
Unique NameTCONS_00071745
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071745 ID=TCONS_00071745|Name=TCONS_00071745|organism=Clytia hemisphaerica|type=transcript|length=552bp
CTTCTTTGAACCATGTTGGATTTTAtcagaaaattttcgaaaaatcgaTT
TTCTTTATGCCATTGGTATGATATGCTTACCAAACTATATAAATCTCTGT
GAGGCAAACCNTCATCGGTATGATATGCTTACCAAACTATATAAATCTCT
GTGAGGTTCTGGAATTACTAGACGCTGAACATTTGAATCCATACAAGAAT
ACAAGAATATCAACAACAAGTCGTATTAATACAATTTCTTCCATCGCTTA
TCATCGTGTTTTGAAATCAACAGACATTGATTTTTGTCATCCTCGTTTCT
CCACCAGAAGAAACGGTAAGGAACATTCGAGTCCAGTAAAAGAAAATTAC
AGCGCATTACACAAATACATTTTGTTCCATTGTTTATCATCAGGCTCTGA
AATCAACAGACATTGATTTTTATCTGCCATATCATCATTATTTCTCGACC
AAAACAAATGATAAGGAACATTTGAATCCATGCAAAGGAAAGTATCTTTC
CAACCGACATTCGATTGTGGGAAACGTAAACATTTGCGTTGCGGTAAGTG
TG
Run BLAST on NCBI

transcript from alignment at scaffold_63:714381..715536-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071745 ID=TCONS_00071745|Name=TCONS_00071745|organism=Clytia hemisphaerica|type=transcript|length=1156bp|location=Sequence derived from alignment at scaffold_63:714381..715536- (Clytia hemisphaerica)
CTTCTTTGAACCATGTTGGATTTTATCAGAAAATTTTCGAAAAATCGATT
TTCTTTATGCCATTGGTATGATATGCTTACCAAACTATATAAATCTCTGT
GAGGCAAACCNTCATCGGTATGATATGCTTACCAAACTATATAAATCTCT
GTGAGGCAAACCTTCTTATCACCTTTGCCATCCAATGCAAATAAACGTCC
GAGTTCAAAATACATTCATTCATTATAGAGAAATAATATATGATCTTCTG
AAACCAACAGTATTTTTATCTAATGACAAATCTCCGACAAATCATCTTGA
TTTCTTGACCATTACTCGATTTTGAACATTCGATTCCGTTACATATATTT
CATTGCCTTGCATAAAAGAATTATTCATAATCAGGTTCTGAAATCATTGG
TTTTTGACCTTGTTTTCTCGGCCAAACAAAACGGTAGAGCACATTCAAAA
GAAATCTACAGTGCATTACATGAATACATTTTCGTTGTTCCATTGTTTAT
CACAAGGTTCTGGAATTACTAGACGCTGAACATTTGAATCCATACAAGAA
TACAAGAATATCAACAACAAGTCGTATTAATACAATTTCTTCCATCGCTT
ATCATCGTGTTTTGAAATCAACAGACATTGATTTTTGTCATCCTCGTTTC
TCCACCAGAAGAAACGGTAAGGAACATTCGAGTCCAGTAAAAGAAAATTA
CAGCGCATTACACAAATACATTTTGTTCCATTGTTTATTATCATCGTGCT
CTAGAACTAACAGACAACGATTTTTATCTAATATGTCATCCGCGTATTCG
ACCAAAAGAATTAAATGGAGCATTTGAATCCATACAAAGATATCTGCAAA
AATTCCTTGATTGAGTCTTTGAAATTGATTTATGTCATGCTCGTTTTTCG
ACTAATACAAATGAAAAGTCCATACAGTATTCAAGTCCATTATAAGAAAT
CTACAGTGCATTACATAAATACATTTTGTTCCATTGTTTATCATCAGGCT
CTGAAATCAACAGACATTGATTTTTATCTGCCATATCATCATTATTTCTC
GACCAAAACAAATGATAAGGAACATTTGAATCCATGCAAAGGAAAGTATC
TTTCCAACCGACATTCGATTGTGGGAAACGTAAACATTTGCGTTGCGGTA
AGTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044554XLOC_044554Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071745-exon-scaffold_63-1575043694:715382..715536TCONS_00071745-exon-scaffold_63-1575043694:715382..715536Clytia hemisphaericaexon
TCONS_00071745-exon-scaffold_63-1575043694:714818..715030TCONS_00071745-exon-scaffold_63-1575043694:714818..715030Clytia hemisphaericaexon
TCONS_00071745-exon-scaffold_63-1575043694:714381..714564TCONS_00071745-exon-scaffold_63-1575043694:714381..714564Clytia hemisphaericaexon
TCONS_00071745-exon-scaffold_63-1510915933:715382..715536TCONS_00071745-exon-scaffold_63-1510915933:715382..715536Clytia hemisphaericaexon
TCONS_00071745-exon-scaffold_63-1510915933:714818..715030TCONS_00071745-exon-scaffold_63-1510915933:714818..715030Clytia hemisphaericaexon
TCONS_00071745-exon-scaffold_63-1510915933:714381..714564TCONS_00071745-exon-scaffold_63-1510915933:714381..714564Clytia hemisphaericaexon
TCONS_00071745-exon-scaffold_63-1491911889:715382..715536TCONS_00071745-exon-scaffold_63-1491911889:715382..715536Clytia hemisphaericaexon
TCONS_00071745-exon-scaffold_63-1491911889:714818..715030TCONS_00071745-exon-scaffold_63-1491911889:714818..715030Clytia hemisphaericaexon
TCONS_00071745-exon-scaffold_63-1491911889:714381..714564TCONS_00071745-exon-scaffold_63-1491911889:714381..714564Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:714381..715536 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.337478	0.118217	0	0.476427	0	0.719816	1.33048	0.145596	0	0.25873	0.248167	0.54325	0.58124	0.104645	2.40594	0.521141	0.90058	0	0	1.42276	1.18045	1.52141	1.61206	0	0.116417	0.333004	0	0	0.768612
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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