Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071731 ID=TCONS_00071731|Name=TCONS_00071731|organism=Clytia hemisphaerica|type=transcript|length=2169bp
CATGATTCTCTGCTCGTTTCTTCTCATGATGGTTTGaataatttatgctt
attataaaaacttttttccagaCGGGGGTCATGTTATCTACAGCTAATAc
catgtttttattgataaattaAAAACCTCATGCCAATATCTATAACATGA
TGTCATATCTCTTTAGATAATAGGTCTATTAAtttatgttaattcatgcg
gtTATGATAAGCAACAAATTTATGCAACCATCATGCTGACTTTagcattt
gaaaatattatagtATAAAACCCCCTGGAATACAGACATCTTTTACATTC
GTTTctcaatgtttttttcttcttatccTCTCTACATATCTTTGAGATAT
TCGTGGAACTGAGCACGGAGTCGAATGGTACCGTGGCTGTTTGCTCGTCG
ACTGATATATTTAATGTGGAAAGAAATATGATCAGATGTTAGTTGTTCGC
CGGCTAGCTAAAAGGAAGTCAAATGTCTGGCAAGCTGTCTACTGTTTATC
TGGAAGATCGATTCATATCCACATTAAAAGGAGTTCTAGTTTCCTATTTT
ATTGGTTAAAACTCTGgtaattttttcattgaaatttgttgttatttttg
cCATAAACAAAGTTGGCTGAGGTAACAGAGACAAATAAAGACATGACTTT
GATATATACTCCTGGTTATCGAGCTGCAAACACAGGGAGCGGGTCTCCCT
TACGCTGTTCAAGTCCTATCAGTTTTCGATCATCTGCTCGCACCGATACC
TCAAAAGATATGGATGGTACGCAGGTAATTAGCACATCACCTCACAGTCG
AGTCTTGGCTGAACGAATGAAGGAGATTCAAATTTCACTTTCCTTTGAAG
ATCTTTCTTCATCTATAGAAAACATTGCGTCAGCAGTAGCCTCGAATTCG
TGCTGTTCTCATGACAACAAACAGCCTCGTTCTCAGTCCTGCATTATTGA
ACAATCTAATAATTTCCCCAAAATGGTAGACAATACACCACGAAGTATTT
TAAAGAAATCTGTTAGTGCTGATGCGGCGTCCATTGCTATTTTGAGAGAA
AGTTTACTGGAATCGAAGTGTTTGTCTATCAGCTTGTCAGACACTAATAT
AGCTCTATCGTCTTCGTGTGACGGTTCCACGACGCCAGAGGAGCCAAAAA
CACCAACCAAAAATGTAACATTTGCTGACGACAACAATTTATCTTTATGC
AAAGTTCATAATTTTGTACCGAGTAGTGAAAAACTTGATCAGTGGCAATT
CAACGTGTTTCATCAAACTCATTTCAAGACGGACCGTTTATCCGGAAATC
AACTTATGAATCCGGTCAAAGGTAAGAAAGTAATCCGGAAACCTAACGAG
TTGTTATTATGTTTCAAGGAGCCGTGTTCGAATGATGATTTCGAACAACG
TTTTAAATATAAATGTGTGGCTTTAGAAAGATGTGCTACTCGCAATCGGA
CCTTGACTGGTATCATTCTTGTCAAAAACATCGAATTTCATAAATACGTC
GCTGTTCGGTACACGGTTGATCGTTGGAAAACGAGTGATGAGGTTGAAGC
GTGTTACGTTCCAAACTCTAACGACGGTGAGACCGATCGTTTCTCTTTCA
CGCTTGCTTTACCGAGAAGTTACAAAGAAATGGAATTTGCGATTTGCTAT
AAAACAGGTGCTCATGAGTACTGGGACAATAATTATAATAGAAACTATAA
AGTGAAAGATGCCCTATCCCCTGCTTCATTAGCTTAAGTTATTAAGTAAT
TTTCTGACATGATTTTTAGGATAGGATTTTTAGTTATTTCTCATATTATT
AATAATCTTTTTAGCGTTTTTCACTAAGATTTAGTTTCTTAATTTAGGGT
GtttcttttaaatcttttaGGAAGAATTTAGTACTCGTCCactcaaaatt
acttttttaacaattatttctGAATTTACTTAAAATGCTAGGaaattttc
ttttagaaaattCTGTAACTTTTTTCCCAGGACCATTTTCATTTGTTatg
ttctgtaaaatatttttttctattttgtaagtATGTTGATATTGTTGCCC
TTTTCGAAATATTGGACCttgaaaaatgtcttttttaaaGGACAAAGTTT
TATTAATATTTTGAGAGTTGTATTTAAAGTAAGTTTCTTACGACAAACGA
AAATTGACAAAGAtcctaa Run BLAST on NCBI transcript from alignment at scaffold_63:334843..337011- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071731 ID=TCONS_00071731|Name=TCONS_00071731|organism=Clytia hemisphaerica|type=transcript|length=2169bp|location=Sequence derived from alignment at scaffold_63:334843..337011- (Clytia hemisphaerica)
CATGATTCTCTGCTCGTTTCTTCTCATGATGGTTTGAATAATTTATGCTT
ATTATAAAAACTTTTTTCCAGACGGGGGTCATGTTATCTACAGCTAATAC
CATGTTTTTATTGATAAATTAAAAACCTCATGCCAATATCTATAACATGA
TGTCATATCTCTTTAGATAATAGGTCTATTAATTTATGTTAATTCATGCG
GTTATGATAAGCAACAAATTTATGCAACCATCATGCTGACTTTAGCATTT
GAAAATATTATAGTATAAAACCCCCTGGAATACAGACATCTTTTACATTC
GTTTCTCAATGTTTTTTTCTTCTTATCCTCTCTACATATCTTTGAGATAT
TCGTGGAACTGAGCACGGAGTCGAATGGTACCGTGGCTGTTTGCTCGTCG
ACTGATATATTTAATGTGGAAAGAAATATGATCAGATGTTAGTTGTTCGC
CGGCTAGCTAAAAGGAAGTCAAATGTCTGGCAAGCTGTCTACTGTTTATC
TGGAAGATCGATTCATATCCACATTAAAAGGAGTTCTAGTTTCCTATTTT
ATTGGTTAAAACTCTGGTAATTTTTTCATTGAAATTTGTTGTTATTTTTG
CCATAAACAAAGTTGGCTGAGGTAACAGAGACAAATAAAGACATGACTTT
GATATATACTCCTGGTTATCGAGCTGCAAACACAGGGAGCGGGTCTCCCT
TACGCTGTTCAAGTCCTATCAGTTTTCGATCATCTGCTCGCACCGATACC
TCAAAAGATATGGATGGTACGCAGGTAATTAGCACATCACCTCACAGTCG
AGTCTTGGCTGAACGAATGAAGGAGATTCAAATTTCACTTTCCTTTGAAG
ATCTTTCTTCATCTATAGAAAACATTGCGTCAGCAGTAGCCTCGAATTCG
TGCTGTTCTCATGACAACAAACAGCCTCGTTCTCAGTCCTGCATTATTGA
ACAATCTAATAATTTCCCCAAAATGGTAGACAATACACCACGAAGTATTT
TAAAGAAATCTGTTAGTGCTGATGCGGCGTCCATTGCTATTTTGAGAGAA
AGTTTACTGGAATCGAAGTGTTTGTCTATCAGCTTGTCAGACACTAATAT
AGCTCTATCGTCTTCGTGTGACGGTTCCACGACGCCAGAGGAGCCAAAAA
CACCAACCAAAAATGTAACATTTGCTGACGACAACAATTTATCTTTATGC
AAAGTTCATAATTTTGTACCGAGTAGTGAAAAACTTGATCAGTGGCAATT
CAACGTGTTTCATCAAACTCATTTCAAGACGGACCGTTTATCCGGAAATC
AACTTATGAATCCGGTCAAAGGTAAGAAAGTAATCCGGAAACCTAACGAG
TTGTTATTATGTTTCAAGGAGCCGTGTTCGAATGATGATTTCGAACAACG
TTTTAAATATAAATGTGTGGCTTTAGAAAGATGTGCTACTCGCAATCGGA
CCTTGACTGGTATCATTCTTGTCAAAAACATCGAATTTCATAAATACGTC
GCTGTTCGGTACACGGTTGATCGTTGGAAAACGAGTGATGAGGTTGAAGC
GTGTTACGTTCCAAACTCTAACGACGGTGAGACCGATCGTTTCTCTTTCA
CGCTTGCTTTACCGAGAAGTTACAAAGAAATGGAATTTGCGATTTGCTAT
AAAACAGGTGCTCATGAGTACTGGGACAATAATTATAATAGAAACTATAA
AGTGAAAGATGCCCTATCCCCTGCTTCATTAGCTTAAGTTATTAAGTAAT
TTTCTGACATGATTTTTAGGATAGGATTTTTAGTTATTTCTCATATTATT
AATAATCTTTTTAGCGTTTTTCACTAAGATTTAGTTTCTTAATTTAGGGT
GTTTCTTTTAAATCTTTTAGGAAGAATTTAGTACTCGTCCACTCAAAATT
ACTTTTTTAACAATTATTTCTGAATTTACTTAAAATGCTAGGAAATTTTC
TTTTAGAAAATTCTGTAACTTTTTTCCCAGGACCATTTTCATTTGTTATG
TTCTGTAAAATATTTTTTTCTATTTTGTAAGTATGTTGATATTGTTGCCC
TTTTCGAAATATTGGACCTTGAAAAATGTCTTTTTTAAAGGACAAAGTTT
TATTAATATTTTGAGAGTTGTATTTAAAGTAAGTTTCTTACGACAAACGA
AAATTGACAAAGATCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071731-exon-scaffold_63-1575043694:334843..337011 | TCONS_00071731-exon-scaffold_63-1575043694:334843..337011 | Clytia hemisphaerica | exon |
| TCONS_00071731-exon-scaffold_63-1510915933:334843..337011 | TCONS_00071731-exon-scaffold_63-1510915933:334843..337011 | Clytia hemisphaerica | exon |
| TCONS_00071731-exon-scaffold_63-1491911889:334843..337011 | TCONS_00071731-exon-scaffold_63-1491911889:334843..337011 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:334843..337011 - |
Blast
BLAST of TCONS_00071731 vs. Swiss-Prot (Human)
Match: PPR3C (Protein phosphatase 1 regulatory subunit 3C OS=Homo sapiens GN=PPP1R3C PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.779e-20 Identity = 60/187 (32.09%), Postives = 92/187 (49.20%), Query Frame = 1 Query: 1165 VTFADDNNLSLCKVHNF--VPSSEKLDQWQFNVFHQTHFKTDRLSGNQLMNPVKGKKVIRKPNELLLCFKEPCSND-DFEQRFKYKCVALERCATRNRTLTGIILVKNIEFHKYVAVRYTVDRWKTSDEVEACYVPNSNDG-ETDRFSFTLALP---RSYKEMEFAICYKTGAHEYWDNNYNRNYKV 1704
V FAD LSL +H F +P D + D L N + + +K + L+L F +P ++ F F+ V LE C+ + RT+TG + VKN+ F K V +R T D WK +V+ Y+ N G ++D FSF + LP + +++EF I Y +WDNN +NY++
Sbjct: 85 VVFADSKGLSLTAIHVFSDLPEEPAWD-----------LQFDLLDLNDISSALKH----HEEKNLILDFPQPSTDYLSFRSHFQKNFVCLENCSLQERTVTGTVKVKNVSFEKKVQIRITFDSWKNYTDVDCVYMKNVYGGTDSDTFSFAIDLPPVIPTEQKIEFCISYHANGQVFWDNNDGQNYRI 256
The following BLAST results are available for this feature:
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