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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071714 ID=TCONS_00071714|Name=TCONS_00071714|organism=Clytia hemisphaerica|type=transcript|length=2761bpRun BLAST on NCBI protein sequence of TCONS_00071714-protein >TCONS_00071714-protein ID=TCONS_00071714-protein|Name=TCONS_00071714-protein|organism=Clytia hemisphaerica|type=polypeptide|length=893bp MAEKKTSGERSKGRRHKKSEINMAMFLFQASYQGNYQDLQEVLYSDKIKSRun BLAST on NCBI transcript from alignment at scaffold_63:261158..301874- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071714 ID=TCONS_00071714|Name=TCONS_00071714|organism=Clytia hemisphaerica|type=transcript|length=40717bp|location=Sequence derived from alignment at scaffold_63:261158..301874- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_63:261158..301874- >TCONS_00071714 ID=TCONS_00071714|Name=TCONS_00071714|organism=Clytia hemisphaerica|type=CDS|length=37506bp|location=Sequence derived from alignment at scaffold_63:261158..301874- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071714 vs. Swiss-Prot (Human)
Match: INVS (Inversin OS=Homo sapiens GN=INVS PE=1 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 1.977e-35 Identity = 141/557 (25.31%), Postives = 244/557 (43.81%), Query Frame = 3
Query: 555 GDTMILEEKDEVGRTPLCHSLLINNSLQIFNELLIAGCDANGQMANRKSLISHIIENDMADFLACILKKNVNLFPHGRNRYNLIHLSAIQKNPGTLQALAQQCLIADMESPDHYGKTPLMHAVENELPENVMILLAKEVNVLMVDNEGNTALH----HANRNTSHTIVNML-VPHNPTLLQIANKAQRFPLTNAVVANNQVIVRALLDHGA-SADVRDGEGHSLIHYAAEYSSTSCLADLGSVGLTLNSP-DNHGVFPIHYSVRLDASDANTTGAKIYFLKTLVTMGADLSVADD---QGLQPIHWAVCMGFTEAMKILLIEDADVNAITKGDQY--CALHLACNCNQFECLELLLLQPTISIDQVDSQGRTALFTACHMKDHRFTETLLQAGANPDHQDKEGKSPAHVAATNVSGDSLWLLSLKRANFELKNNSGETPIHLACKNADDACLRFLLTRRCNVNTTLTNGLSTLHIAVSSKCPNKVSLLLQHGAKRNQIYYGETSTITPLDVALENADHKCIKLLQKYGARTAHYILTQSANLIRTTWKNYHKRKVNR 2189
G++ + +++D+ GRTPL + +L + L + LL AG D N ++++ + + F+ +L + N +HL+ ++P L L + ++++ D +T L + PE+V +L+ + N+ + D EG LH H + + HT+ +L +LL + R PL AV N +V L + + + D + +H+AA + L + P D+ G P+HY+ A+ F +T+ SV DD +G WA G + ++ +L +D++ I D+Y ALH A ++LLL + +D D T LF AC M +TL++ GA D D++G S H AA + D +L + N +++ +G TP+ A C+ L+ + N G + LH + ++ + + LLL A NQ+ E TPLD AL H+ I+ + ++GA + I +A I+ +K Y RK R
Sbjct: 36 GNSALKDKEDQFGRTPLMYCVLADR-LDCADALLKAGADVNKTDHSQRTALHLAAQKGNYRFMKLLLTRRANWMQKDLEEMTPLHLTTRHRSPKCLALLLKFMAPGEVDTQDKNKQTALHWSAYYNNPEHVKLLIKHDSNIGIPDVEGKIPLHWAANHKDPSAVHTVRCILDAAPTESLLNWQDYEGRTPLHFAVADGNVTVVDVLTSYESCNITSYDNLFRTPLHWAALLGHAQIVHLLLERNKSGTIPSDSQGATPLHYA------------AQSNFAETVKVFLKHPSVKDDSDLEGRTSFMWAAGKGSDDVLRTMLSLKSDID-INMADKYGGTALHAAALSGHVSTVKLLL-ENNAQVDATDVMKHTPLFRACEMGHKDVIQTLIKGGARVDLVDQDGHSLLHWAALGGNADVCQILIENKINPNVQDYAGRTPLQCAAYGGYINCMAVLMENNADPNIQDKEGRTALHWSCNNGYLDAIKLLLDFAAFPNQMENNE-ERYTPLDYALLGERHEVIQFMLEHGALSIAAIQDIAAFKIQAVYKGYKVRKAFR 576 The following BLAST results are available for this feature:
BLAST of TCONS_00071714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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