TCONS_00071702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071702
Unique NameTCONS_00071702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071702 ID=TCONS_00071702|Name=TCONS_00071702|organism=Clytia hemisphaerica|type=transcript|length=429bp
CTTGGCTTGATATAATTAATTCAGATTAAGCAGGGTTCATAAAGGCAAAG
GCGGTCAAGCTGCTCAAATAATAGGATTTATACTAAACTATTAATAGCTA
CTGTATTCCATACATCAATGACAATAATATTTCATTGAAATCAAGGATTT
AGGCTCCTTCAAAAAAATCTTGTCTCCTTGCACAACGAGCACAACAACCT
AAATCCACTCAGTAGCAAATTACTAAACTGAGGATTTAAGCAAGACTAAA
ACTTTAAACCTTTGCTTTGCTCCAACACTCAGGCCATATTTAAAAAAGAC
AGGGCAGGCGGCACCCTTCCAGCAACAGCTAAAAAGGCTGTTCGTACCAC
AGCACAGTTTTGGTGATTTGAAGGGTACAGACAGAGGCTAATAAAAGACC
CAAAAAAGGCATGAAGAATGTGATATTCA
Run BLAST on NCBI

transcript from alignment at scaffold_63:1243677..1244172+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071702 ID=TCONS_00071702|Name=TCONS_00071702|organism=Clytia hemisphaerica|type=transcript|length=496bp|location=Sequence derived from alignment at scaffold_63:1243677..1244172+ (Clytia hemisphaerica)
CTTGGCTTGATATAATTAATTCAGATTAAGCAGGGTTCATAAAGGCAAAG
GCAGTCAAGCTGCTCAAATGATAGGATTTATACTAAAATAATAGTAAGTN
GGTTCATAAAGGCAAAGGCGGTCAAGCTGCTCAAATAATAGGATTTATAC
TAAACTATTAATAGCTACTGTATTCCATACATCAATGACAATAATATTTC
ATTGAAATCAAGGATTTAGGCTCCTTCAAAAAAATCTTGTCTCCTTGCAC
AACGAGCACAACAACCTAAATCCACTCAGTAGCAAATTACTAAACTGAGG
ATTTAAGCAAGACTAAAACTTTAAACCTTTGCTTTGCTCCAACACTCAGG
CCATATTTAAAAAAGACAGGGCAGGCGGCACCCTTCCAGCAACAGCTAAA
AAGGCTGTTCGTACCACAGCACAGTTTTGGTGATTTGAAGGGTACAGACA
GAGGCTAATAAAAGACCCAAAAAAGGCATGAAGAATGTGATATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044539XLOC_044539Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071702-exon-scaffold_63-1491911889:1243677..1243720TCONS_00071702-exon-scaffold_63-1491911889:1243677..1243720Clytia hemisphaericaexon
TCONS_00071702-exon-scaffold_63-1510915933:1243677..1243720TCONS_00071702-exon-scaffold_63-1510915933:1243677..1243720Clytia hemisphaericaexon
TCONS_00071702-exon-scaffold_63-1575043694:1243677..1243720TCONS_00071702-exon-scaffold_63-1575043694:1243677..1243720Clytia hemisphaericaexon
TCONS_00071702-exon-scaffold_63-1491911889:1243788..1244172TCONS_00071702-exon-scaffold_63-1491911889:1243788..1244172Clytia hemisphaericaexon
TCONS_00071702-exon-scaffold_63-1510915933:1243788..1244172TCONS_00071702-exon-scaffold_63-1510915933:1243788..1244172Clytia hemisphaericaexon
TCONS_00071702-exon-scaffold_63-1575043694:1243788..1244172TCONS_00071702-exon-scaffold_63-1575043694:1243788..1244172Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:1243677..1244172 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.46072	2.14363	0	0	0	0	0.135893	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.336203	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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