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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071697 ID=TCONS_00071697|Name=TCONS_00071697|organism=Clytia hemisphaerica|type=transcript|length=2345bp
AAAACATCTACTTAGGGGAATAATTCGCTCTCTTTAGAATATTTCGTGTT
TCTTTCTTtctatttcttatttttcttcaatAAAGTAAGAAATTTTTAGG
AGCCTTTTCAAGTTCATAAAGATAATTTTTTCgtgttatttaaaaaatct
ttgggAGTGAAAAAGACTACTTAATATTGGTTTGTTAAgagGGACACTTC
AATTGCCATCGTCAACAAGATGAACCAGCAAACGCAAtatcgaattttca
ttttactttttgtgatttttggttCCATCTCTTTGTTAATGTCAGTTTGT
GGAAAGTATTGGATCAAGACAACTGACTTATATTCTGGACTATGGGAAAT
GTGTTTCCACGATGTTTCACATTGTAAAGAAGTTGATACCGCTAAGCAAT
aCTGGATTCCACTCGTCCGTGGTTTCATGATTGCAGGCTTGTCATTATTT
GGTTTAGCTctcttgtttttcatttgtttgatCTCCAGTCCGAAAGCGTT
CAACTCCTCAGTCCTCAGTTTCATCATTGGAGCTGGCGTGTGTGCATCAG
TCGTTGGAATGTCGATTTACACTCAATACAACAGTGACACCACAAACAGT
TACAATTACCATTGGGCGTACTGGCTTGGGTGGTTCGGTAACGTACTTAT
GTGTTGCGCCACTGGTATGGCAATTCATGACGCCCGCCGCCCTGCATCAC
CTTATGCTGAAGCTGAACGTTTGAGATAAATAATCACACATAATTTATCA
CTCGGTAATAGACCATTTTACAGTCGAAAtaaatcatgggtaatcaggac
tggcTATGCTCTAGTAACGACTTCCGGTTGGCTAGacacaaaaatcttca
aaaaatttcaaaactttggaccaataaaAAGTCGTCATTGGCGTGCAGTG
GTCCtaattacccattacgctttacgaatgtgaaatggcctatgatAGGC
AATTTTGCAGTTGCAATGAATCATGGTTAATCAGGACTTAATTGCGTTTT
TATAACCAATTCCTGTAGGTCTCAAAAATCTCAGAAATCTTGGACCAATA
AGAAGTCGTTTTTTTTCTCGCAAAATCTTGTTCACCCATTACGAATTGCG
TTTACTGTAAAATGGCCTATACTGTTTGTATTTGTAATATCTCGAAAATT
TGTGACTAAAGTATAGTAAATTTCTAATGAAATTGTAACACCCTTGTAAG
ACTAACATTCTTTCTGGGCATGTATTTAAGAAAATTTCCATAATAAAGAC
GTGCCACTCACCGAAATGTCTCGCAccataaattttgtttttcgatctac
aaaagtaaaacttttagatttagTTTTAGAAAGTTTTAGAAGCCGTGTTA
TACAGTATTTGTCCAAAAACAATTGacctttaaaggtatttttgagATGT
Ccgtgaaatttgtaaaatttgtttcttgtcttgtcttcattttgagcagt
ttgcaCTTGATTTTActcttattttcatttcagtACGTTTCTAACTTTGt
aaaaattgttaaattgtatatattaaatgaaatttgtatttcaaaattga
atttatCAGCCTTAAAGAGATAATATTTTGCACATATTATATTAATAAAT
AAATACACCACCATAATAAAAGttataaattttggaaatttcctgcacaa
aatacaaaatatccTATCAAATTGTCTATGAAAATTGTGCTTTTCTAGct
aagaaagaaaataatttgttgtCTATTTTAGTGCTTCATAGATTGAATAA
TGAACATGATTGAATTCAAAGATTTGTACCCCTCCAATAACCAATAAAAT
TGAGTAAGAATACGTAAGCTAGGGGAGAGGGCTTTTAGGaaaaaatgggt
gccgggtatttGCGAGGGTATAAGAATTCCATTTTTACATCCTcaaaagt
ctctttaagggttaCGAAAACCCCCAATGCACTCCCTAAAGATTGTAAAT
ATGCCAAAGACAAATTGTGTATATTCCTAAAATCGTTGGAGATAACATAC
AGCCGaggctctctaattcgacatttcACTATTAAATATGCTCCATTAAT
ATTCAatgatattgaaagtcaccgtcaacaagaaactctggCAAACGATT
CGatacgctctcttattcgatggaAATCTATCTctccttgaaaattgaat
taaaaaagcgTCAACTATACTAtgtatcccagctggcacaataCGTCtgt
ttaacgtttatctaatgatCACAACGTCCTTATAACGCccggggtactag
ggttgcgagcttacagggggtgccgcccgactttcgaccctcagaccatt
accgggactaaaaaggagaaaacaaaggaaaattttgtgaatttt Run BLAST on NCBI protein sequence of TCONS_00071697-protein >TCONS_00071697-protein ID=TCONS_00071697-protein|Name=TCONS_00071697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MNQQTQYRIFILLFVIFGSISLLMSVCGKYWIKTTDLYSGLWEMCFHDVS
HCKEVDTAKQYWIPLVRGFMIAGLSLFGLALLFFICLISSPKAFNSSVLS
FIIGAGVCASVVGMSIYTQYNSDTTNSYNYHWAYWLGWFGNVLMCCATGM
AIHDARRPASPYAEAERLR Run BLAST on NCBI transcript from alignment at scaffold_63:1197378..1201925+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071697 ID=TCONS_00071697|Name=TCONS_00071697|organism=Clytia hemisphaerica|type=transcript|length=4548bp|location=Sequence derived from alignment at scaffold_63:1197378..1201925+ (Clytia hemisphaerica)
AAAACATCTACTTAGGGGAATAATTCGCTCTCTTTAGAATATTTCGTGTT
TCTTTCTTtctatttcttatttttcttcaatAAAGTAAGAAATTTTTAGG
AGCCTTTTCAAGTTCATAAAGATAATTTTTTCgtgttatttaaaaaatct
ttgggAGTGAAAAAGACTACTTAATATTGGTTTGTTAAgaggtaagattt
ttttctttattttcaattttccggCGGGATTGGATGGCAAAAGTCAAATA
CAATAATGCTAATATATTTGAAAACTTAGTTGAGGCTTTATTTGGTCTTA
TCTTCAATTAACCTGCAATCATGATCGGAATACATTGAGAATTTCGGtta
ttttaacctttttcaaaatttaaagttccggcgagaaagttgattttggc
ctatctctttaatttaatcgaatatttcaatttgggaggggttggcagac
ttccaggctacattttgagccttattggactatttttgaacttttggatc
cccaGATCCTAAGGTTCTAAGTcataagtctagcgttaaaactcagagtt
aaaactcttccctttagagcacttacaaatcaattgtggtttcaaaactt
cccggagaattttcttttttctcaaaaattattaCCTTGATTGTGGTTGA
ACACAGTCTTCTAAATAAAATTCATCAAGTTTTTAGttatcaaattttta
tctttatatAAAGGAAAGACTGAAAATATAAACTGTAAAAATTTTTCCAT
ACTTAAAGATAAGGGAATAAGAAAATTACAAATTCTAATTTTTCTGTGAA
TTTTCTGAAACAGCTCTTGAGGTTTGATTATATCAACTTACCCGCCAAAC
TCTTGGTCATCTTGGAAGTTCCACATAGAAAATCCACAGAAATgtataac
acccccttctcatagacaTGATAGGATttctttcagccagtggggataaa
aataacggactgaaactcgatggggattgatatttccctattcagtgggg
atggtaaaatattaaatatttaccagtgaggattggtttattagattatt
ttcagttgggacaaaaattgaaggataattttccacgGGGGACGgaaatt
ttgctaatttttccagtgggaagggttcccagtgggtttgtgagaagggg
tgttgtATAGGATTTGGACATACACATAACATACTTCGAAAAAAAAGGTT
ATTCACTAGCTGTGTATTAGCTTACTTAAGTATTACGAGGTCGGTAAAAC
TGTGCTTGATAATGAAAAGTTATTTCttaaatcaatcaaaaaaatcttaa
ggaaaatttgaaatagaaaTAAATTTCAAGTCTTAATCGACTTCTTAATC
CTTAATTTTAAGAAAGTCTGAAAAAGACTTCCAAGTTGTAACGATTATCA
GCAATATCATAATTGCTACCAACTTTCTTTTTAGGGACACTTCAATTGCC
ATCGTCAACAAGATGAACCAGCAAACGCAAtatcgaattttcattttact
ttttgtgatttttggttCCATCTCTTTGTTAATGTCAGTTTGTGGAAAGT
ATTGGATCAAGACAACTGACTTATATTCTGGACTATGGGAAATGTGTTTC
CACGATGTTTCACATTGTAAAGAAGTTGATACCGCTAAGCAATGTAAGTA
ACATCCCTGTTTTAGTGACATTTGACAAGCGAACGGATAAAACAAAGTAC
CTAAATACAGTCAGCTCTTCTAATTCGAACCATTGCTATTTGAATCTTTC
GATTATTCGAACAAATGTTGTTTGATTATTAGTATCAAATACTTTAATTC
CAATTTTTcactaattcgaagaaaattcttagtGCCTTTAtcaaagatcg
aattagagagaggcaAGTGTACAAATGAAATGAATTACGTCACGAAAaca
cttacctcgttttcaaaatattgctatgtgattgattcccagaggagttc
aTAATTTACCATATTAATAAAAGTTACACTTGAAGATTCAAGAGATTTAA
GCACCTTCGTAAcggttttaattttaattttttgggaaGGTTTTGAGGCT
TTCTTGACGATAATCTTTGAGTTTAAATCCCGGAGGGTTAGAGTAGAATA
TGGGAAATTATGTGACTTCATTTCCCATTCAGAGGTCTCgggtctagccc
ttcgggcttggaagtcaatggggATAATTGACAATCTAAAATTAAAATGC
TATAAAATGATATTCTTAGTTTTAGttgccaatttcatcatgaatgtttt
ttcaaattattttcaaatttctttagaCTGGATTCCACTCGTCCGTGGTT
TCATGATTGCAGGCTTGTCATTATTTGGTTTAGCTctcttgtttttcatt
tgtttgatCTCCAGTCCGAAAGCGTTCAACTCCTCAGTCCTCAGTTTCAT
CATTGGAGCTGGCGGTGAGTACACTAATCATTTCAGTGGTCATAGCGTAT
AGTAGAGCAGGAGAAGGTTGTGGGCTTGAACTCTAGACGGGTCAtgccaa
agtttcaaaaatgatATTTAATACCTTTAAGCTACTCAGGAAATAGGGTA
ATTGGGAGAAACCTAGAGAAAGGAGTGGCCTCCCTCCCCTACTtttgggt
agacagctataaagaaaagaaaaccttCAGgccgccctcgactgcggttg
TGAACTGAAGAAACCGAGAAAAATTGATACCCAATTATTTCACCATATTT
CTTAAGAAAAGGCTTTAATGAacactttgaattttcaatAGTGTGTGCAT
CAGTCGTTGGAATGTCGATTTACACTCAATACAACAGTGACACCACAAAC
AGTTACAATTACCATTGGGCGTACTGGCTTGGGTGGTTCGGTAACGTACT
TATGTGTTGCGCCACTGGTATGGCAATTCATGACGCCCGCCGCCCTGCAT
CACCTTATGCTGAAGCTGAACGTTTGAGATAAATAATCACACATAATTTA
TCACTCGGTAATAGACCATTTTACAGTCGAAAtaaatcatgggtaatcag
gactggcTATGCTCTAGTAACGACTTCCGGTTGGCTAGacacaaaaatct
tcaaaaaatttcaaaactttggaccaataaaAAGTCGTCATTGGCGTGCA
GTGGTCCtaattacccattacgctttacgaatgtgaaatggcctatgatA
GGCAATTTTGCAGTTGCAATGAATCATGGTTAATCAGGACTTAATTGCGT
TTTTATAACCAATTCCTGTAGGTCTCAAAAATCTCAGAAATCTTGGACCA
ATAAGAAGTCGTTTTTTTTCTCGCAAAATCTTGTTCACCCATTACGAATT
GCGTTTACTGTAAAATGGCCTATACTGTTTGTATTTGTAATATCTCGAAA
ATTTGTGACTAAAGTATAGTAAATTTCTAATGAAATTGTAACACCCTTGT
AAGACTAACATTCTTTCTGGGCATGTATTTAAGAAAATTTCCATAATAAA
GACGTGCCACTCACCGAAATGTCTCGCAccataaattttgtttttcgatc
tacaaaagtaaaacttttagatttagTTTTAGAAAGTTTTAGAAGCCGTG
TTATACAGTATTTGTCCAAAAACAATTGacctttaaaggtatttttgagA
TGTCcgtgaaatttgtaaaatttgtttcttgtcttgtcttcattttgagc
agtttgcaCTTGATTTTActcttattttcatttcagtACGTTTCTAACTT
TGtaaaaattgttaaattgtatatattaaatgaaatttgtatttcaaaat
tgaatttatCAGCCTTAAAGAGATAATATTTTGCACATATTATATTAATA
AATAAATACACCACCATAATAAAAGttataaattttggaaatttcctgca
caaaatacaaaatatccTATCAAATTGTCTATGAAAATTGTGCTTTTCTA
GctaagaaagaaaataatttgttgtCTATTTTAGTGCTTCATAGATTGAA
TAATGAACATGATTGAATTCAAAGATTTGTACCCCTCCAATAACCAATAA
AATTGAGTAAGAATACGTAAGCTAGGGGAGAGGGCTTTTAGGaaaaaatg
ggtgccgggtatttGCGAGGGTATAAGAATTCCATTTTTACATCCTcaaa
agtctctttaagggttaCGAAAACCCCCAATGCACTCCCTAAAGATTGTA
AATATGCCAAAGACAAATTGTGTATATTCCTAAAATCGTTGGAGATAACA
TACAGCCGaggctctctaattcgacatttcACTATTAAATATGCTCCATT
AATATTCAatgatattgaaagtcaccgtcaacaagaaactctggCAAACG
ATTCGatacgctctcttattcgatggaAATCTATCTctccttgaaaattg
aattaaaaaagcgTCAACTATACTAtgtatcccagctggcacaataCGTC
tgtttaacgtttatctaatgatCACAACGTCCTTATAACGCccggggtac
tagggttgcgagcttacagggggtgccgcccgactttcgaccctcagacc
attaccgggactaaaaaggagaaaacaaaggaaaattttgtgaatttt Coding sequence (CDS) from alignment at scaffold_63:1197378..1201925+ >TCONS_00071697 ID=TCONS_00071697|Name=TCONS_00071697|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_63:1197378..1201925+ (Clytia hemisphaerica)
ATGAACCAGCAAACGCAAtatcgaattttcattttactttttgtgatttt
tggttCCATCTCTTTGTTAATGTCAGTTTGTGGAAAGTATTGGATCAAGA
CAACTGACTTATATTCTGGACTATGGGAAATGTGTTTCCACGATGTTTCA
CATTGTAAAGAAGTTGATACCGCTAAGCAATaCTGGATTCCACTCGTCCG
TGGTTTCATGATTGCAGGCTTGTCATTATTTGGTTTAGCTctcttgtttt
tcatttgtttgatCTCCAGTCCGAAAGCGTTCAACTCCTCAGTCCTCAGT
TTCATCATTGGAGCTGGCGTGTGTGCATCAGTCGTTGGAATGTCGATTTA
CACTCAATACAACAGTGACACCACAAACAGTTACAATTACCATTGGGCGT
ACTGGCTTGGGTGGTTCGGTAACGTACTTATGTGTTGCGCCACTGGTATG
GCAATTCATGACGCCCGCCGCCCTGCATCACCTTATGCTGAAGCTGAACG
TTTGAGATAAATGAACCAGCAAACGCAAtatcgaattttcattttacttt
ttgtgatttttggttCCATCTCTTTGTTAATGTCAGTTTGTGGAAAGTAT
TGGATCAAGACAACTGACTTATATTCTGGACTATGGGAAATGTGTTTCCA
CGATGTTTCACATTGTAAAGAAGTTGATACCGCTAAGCAATaCTGGATTC
CACTCGTCCGTGGTTTCATGATTGCAGGCTTGTCATTATTTGGTTTAGCT
ctcttgtttttcatttgtttgatCTCCAGTCCGAAAGCGTTCAACTCCTC
AGTCCTCAGTTTCATCATTGGAGCTGGCGTGTGTGCATCAGTCGTTGGAA
TGTCGATTTACACTCAATACAACAGTGACACCACAAACAGTTACAATTAC
CATTGGGCGTACTGGCTTGGGTGGTTCGGTAACGTACTTATGTGTTGCGC
CACTGGTATGGCAATTCATGACGCCCGCCGCCCTGCATCACCTTATGCTG
AAGCTGAACGTTTGAGATAAATGAACCAGCAAACGCAAtatcgaattttc
attttactttttgtgatttttggttCCATCTCTTTGTTAATGTCAGTTTG
TGGAAAGTATTGGATCAAGACAACTGACTTATATTCTGGACTATGGGAAA
TGTGTTTCCACGATGTTTCACATTGTAAAGAAGTTGATACCGCTAAGCAA
TaCTGGATTCCACTCGTCCGTGGTTTCATGATTGCAGGCTTGTCATTATT
TGGTTTAGCTctcttgtttttcatttgtttgatCTCCAGTCCGAAAGCGT
TCAACTCCTCAGTCCTCAGTTTCATCATTGGAGCTGGCGTGTGTGCATCA
GTCGTTGGAATGTCGATTTACACTCAATACAACAGTGACACCACAAACAG
TTACAATTACCATTGGGCGTACTGGCTTGGGTGGTTCGGTAACGTACTTA
TGTGTTGCGCCACTGGTATGGCAATTCATGACGCCCGCCGCCCTGCATCA
CCTTATGCTGAAGCTGAACGTTTGAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071697-exon-scaffold_63-1491911889:1197378..1197568 | TCONS_00071697-exon-scaffold_63-1491911889:1197378..1197568 | Clytia hemisphaerica | exon |
| TCONS_00071697-exon-scaffold_63-1510915933:1197378..1197568 | TCONS_00071697-exon-scaffold_63-1510915933:1197378..1197568 | Clytia hemisphaerica | exon |
| TCONS_00071697-exon-scaffold_63-1575043694:1197378..1197568 | TCONS_00071697-exon-scaffold_63-1575043694:1197378..1197568 | Clytia hemisphaerica | exon |
| TCONS_00071697-exon-scaffold_63-1491911889:1198812..1199020 | TCONS_00071697-exon-scaffold_63-1491911889:1198812..1199020 | Clytia hemisphaerica | exon |
| TCONS_00071697-exon-scaffold_63-1510915933:1198812..1199020 | TCONS_00071697-exon-scaffold_63-1510915933:1198812..1199020 | Clytia hemisphaerica | exon |
| TCONS_00071697-exon-scaffold_63-1575043694:1198812..1199020 | TCONS_00071697-exon-scaffold_63-1575043694:1198812..1199020 | Clytia hemisphaerica | exon |
| TCONS_00071697-exon-scaffold_63-1491911889:1199654..1199791 | TCONS_00071697-exon-scaffold_63-1491911889:1199654..1199791 | Clytia hemisphaerica | exon |
| TCONS_00071697-exon-scaffold_63-1510915933:1199654..1199791 | TCONS_00071697-exon-scaffold_63-1510915933:1199654..1199791 | Clytia hemisphaerica | exon |
| TCONS_00071697-exon-scaffold_63-1575043694:1199654..1199791 | TCONS_00071697-exon-scaffold_63-1575043694:1199654..1199791 | Clytia hemisphaerica | exon |
| TCONS_00071697-exon-scaffold_63-1491911889:1200119..1201925 | TCONS_00071697-exon-scaffold_63-1491911889:1200119..1201925 | Clytia hemisphaerica | exon |
| TCONS_00071697-exon-scaffold_63-1510915933:1200119..1201925 | TCONS_00071697-exon-scaffold_63-1510915933:1200119..1201925 | Clytia hemisphaerica | exon |
| TCONS_00071697-exon-scaffold_63-1575043694:1200119..1201925 | TCONS_00071697-exon-scaffold_63-1575043694:1200119..1201925 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:1197378..1201925 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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