TCONS_00071686 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071686
Unique NameTCONS_00071686
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length891

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071686 ID=TCONS_00071686|Name=TCONS_00071686|organism=Clytia hemisphaerica|type=transcript|length=891bp
AGATAATTGTAAAACAATAATTTTGGAAAGATTTGTAGgaggacagactt
tagttttaATCGATCACGTCAATCAGAATCAATTTCCTTAATGACGAAAA
CTCGTTATTTAGTTTAATTTTGATCGATGACGTATTTGAAATTGTCATCA
GAcgttatcaaaaaatttctttttgacaaGTTTTTCCTGTTGTATCTGCG
TTGAAATAGATCAGTGCTAAATACCTTGAATATCTTATCTTAAAGTTTTG
GATATACGCGAAAACATCCAAGTTTTCAAGCTTGATAGTATCATGTTTTT
GAAGACCGATAGTTTTGTGGAAAAAAGAGTTGACATCCGAGAAAGAGTGA
AAAAGGCTTCACCTTTTGCCTTAGCACTGCTTCAAATGCattattttatc
tgaaaaaatgAACGTTTTGTTTTCTTCTGGAGAATCCAAATAGTTTGTTC
CTCTACGTGTCTAAATCAATATAGCTCTTTGAAACATTTCAGACGTGATT
GTAAAACAataattttgaggaaaaagttGAAACCCAAGAAAGAGTGTAAA
AAGCCTTCACCTTTTGCCTTAGCAATGCTTCAAATGCATTATTTTTGTAT
CTTTACAGGCTATCGAAATTATCAATAACAACAAGTATGGTAACGGAACA
GCTATTTTCACCAACTCTGGTTCAGCTGCACGTAAATTCACACAAGAAGT
TGATGTTGGACAAATTGGTGTCAATGTTCCCATCCCTGTACCTTTGCCCA
TGTTTTCTTTCACCGGATCTCGTGGGTCTTTCCGTGGAGATCTGAATTTC
TATGGAAAAGCTGTAAGCTGTTTAAATTCCACTCATTTCCTTTAACCAAA
TCCAGGATTTACTTAAAACACCTCTGTCTCAAGAAATCGAC
Run BLAST on NCBI

transcript from alignment at scaffold_63:781679..782569+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071686 ID=TCONS_00071686|Name=TCONS_00071686|organism=Clytia hemisphaerica|type=transcript|length=891bp|location=Sequence derived from alignment at scaffold_63:781679..782569+ (Clytia hemisphaerica)
AGATAATTGTAAAACAATAATTTTGGAAAGATTTGTAGgaggacagactt
tagttttaATCGATCACGTCAATCAGAATCAATTTCCTTAATGACGAAAA
CTCGTTATTTAGTTTAATTTTGATCGATGACGTATTTGAAATTGTCATCA
GAcgttatcaaaaaatttctttttgacaaGTTTTTCCTGTTGTATCTGCG
TTGAAATAGATCAGTGCTAAATACCTTGAATATCTTATCTTAAAGTTTTG
GATATACGCGAAAACATCCAAGTTTTCAAGCTTGATAGTATCATGTTTTT
GAAGACCGATAGTTTTGTGGAAAAAAGAGTTGACATCCGAGAAAGAGTGA
AAAAGGCTTCACCTTTTGCCTTAGCACTGCTTCAAATGCattattttatc
tgaaaaaatgAACGTTTTGTTTTCTTCTGGAGAATCCAAATAGTTTGTTC
CTCTACGTGTCTAAATCAATATAGCTCTTTGAAACATTTCAGACGTGATT
GTAAAACAataattttgaggaaaaagttGAAACCCAAGAAAGAGTGTAAA
AAGCCTTCACCTTTTGCCTTAGCAATGCTTCAAATGCATTATTTTTGTAT
CTTTACAGGCTATCGAAATTATCAATAACAACAAGTATGGTAACGGAACA
GCTATTTTCACCAACTCTGGTTCAGCTGCACGTAAATTCACACAAGAAGT
TGATGTTGGACAAATTGGTGTCAATGTTCCCATCCCTGTACCTTTGCCCA
TGTTTTCTTTCACCGGATCTCGTGGGTCTTTCCGTGGAGATCTGAATTTC
TATGGAAAAGCTGTAAGCTGTTTAAATTCCACTCATTTCCTTTAACCAAA
TCCAGGATTTACTTAAAACACCTCTGTCTCAAGAAATCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044527XLOC_044527Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071686-exon-scaffold_63-1491911889:781679..782569TCONS_00071686-exon-scaffold_63-1491911889:781679..782569Clytia hemisphaericaexon
TCONS_00071686-exon-scaffold_63-1510915933:781679..782569TCONS_00071686-exon-scaffold_63-1510915933:781679..782569Clytia hemisphaericaexon
TCONS_00071686-exon-scaffold_63-1575043694:781679..782569TCONS_00071686-exon-scaffold_63-1575043694:781679..782569Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:781679..782569 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.144228	1.65401	3.22827	0	2.36617	0.617444	1.45447	0.0919468	0	0	0.0668572	0	0	0.111835	0.490079	0.289979	0.299825	0	0	0.103448	0.161161	0.135664	0	0.815624	0	0.158487	0.165383	0	0.225475
Blast
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BLAST of TCONS_00071686 vs. Swiss-Prot (Human)
Match: MMSA (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Homo sapiens GN=ALDH6A1 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.916e-29
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 3 
Query:  606 QAIEIINNNKYGNGTAIFTNSGSAARKFTQEVDVGQIGVNVPIPVPLPMFSFTGSRGSFRGDLNFYGK 809
            +AI+I+NNN YGNGTAIFT +G+ ARK+   VDVGQ+GVNVPIPVPLPMFSFTGSR SFRGD NFYGK
Sbjct:  433 EAIQIVNNNPYGNGTAIFTTNGATARKYAHLVDVGQVGVNVPIPVPLPMFSFTGSRSSFRGDTNFYGK 500
The following BLAST results are available for this feature:
BLAST of TCONS_00071686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMSA1.916e-2977.94Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
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