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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071686 ID=TCONS_00071686|Name=TCONS_00071686|organism=Clytia hemisphaerica|type=transcript|length=891bp
AGATAATTGTAAAACAATAATTTTGGAAAGATTTGTAGgaggacagactt
tagttttaATCGATCACGTCAATCAGAATCAATTTCCTTAATGACGAAAA
CTCGTTATTTAGTTTAATTTTGATCGATGACGTATTTGAAATTGTCATCA
GAcgttatcaaaaaatttctttttgacaaGTTTTTCCTGTTGTATCTGCG
TTGAAATAGATCAGTGCTAAATACCTTGAATATCTTATCTTAAAGTTTTG
GATATACGCGAAAACATCCAAGTTTTCAAGCTTGATAGTATCATGTTTTT
GAAGACCGATAGTTTTGTGGAAAAAAGAGTTGACATCCGAGAAAGAGTGA
AAAAGGCTTCACCTTTTGCCTTAGCACTGCTTCAAATGCattattttatc
tgaaaaaatgAACGTTTTGTTTTCTTCTGGAGAATCCAAATAGTTTGTTC
CTCTACGTGTCTAAATCAATATAGCTCTTTGAAACATTTCAGACGTGATT
GTAAAACAataattttgaggaaaaagttGAAACCCAAGAAAGAGTGTAAA
AAGCCTTCACCTTTTGCCTTAGCAATGCTTCAAATGCATTATTTTTGTAT
CTTTACAGGCTATCGAAATTATCAATAACAACAAGTATGGTAACGGAACA
GCTATTTTCACCAACTCTGGTTCAGCTGCACGTAAATTCACACAAGAAGT
TGATGTTGGACAAATTGGTGTCAATGTTCCCATCCCTGTACCTTTGCCCA
TGTTTTCTTTCACCGGATCTCGTGGGTCTTTCCGTGGAGATCTGAATTTC
TATGGAAAAGCTGTAAGCTGTTTAAATTCCACTCATTTCCTTTAACCAAA
TCCAGGATTTACTTAAAACACCTCTGTCTCAAGAAATCGAC Run BLAST on NCBI transcript from alignment at scaffold_63:781679..782569+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071686 ID=TCONS_00071686|Name=TCONS_00071686|organism=Clytia hemisphaerica|type=transcript|length=891bp|location=Sequence derived from alignment at scaffold_63:781679..782569+ (Clytia hemisphaerica)
AGATAATTGTAAAACAATAATTTTGGAAAGATTTGTAGgaggacagactt
tagttttaATCGATCACGTCAATCAGAATCAATTTCCTTAATGACGAAAA
CTCGTTATTTAGTTTAATTTTGATCGATGACGTATTTGAAATTGTCATCA
GAcgttatcaaaaaatttctttttgacaaGTTTTTCCTGTTGTATCTGCG
TTGAAATAGATCAGTGCTAAATACCTTGAATATCTTATCTTAAAGTTTTG
GATATACGCGAAAACATCCAAGTTTTCAAGCTTGATAGTATCATGTTTTT
GAAGACCGATAGTTTTGTGGAAAAAAGAGTTGACATCCGAGAAAGAGTGA
AAAAGGCTTCACCTTTTGCCTTAGCACTGCTTCAAATGCattattttatc
tgaaaaaatgAACGTTTTGTTTTCTTCTGGAGAATCCAAATAGTTTGTTC
CTCTACGTGTCTAAATCAATATAGCTCTTTGAAACATTTCAGACGTGATT
GTAAAACAataattttgaggaaaaagttGAAACCCAAGAAAGAGTGTAAA
AAGCCTTCACCTTTTGCCTTAGCAATGCTTCAAATGCATTATTTTTGTAT
CTTTACAGGCTATCGAAATTATCAATAACAACAAGTATGGTAACGGAACA
GCTATTTTCACCAACTCTGGTTCAGCTGCACGTAAATTCACACAAGAAGT
TGATGTTGGACAAATTGGTGTCAATGTTCCCATCCCTGTACCTTTGCCCA
TGTTTTCTTTCACCGGATCTCGTGGGTCTTTCCGTGGAGATCTGAATTTC
TATGGAAAAGCTGTAAGCTGTTTAAATTCCACTCATTTCCTTTAACCAAA
TCCAGGATTTACTTAAAACACCTCTGTCTCAAGAAATCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071686-exon-scaffold_63-1491911889:781679..782569 | TCONS_00071686-exon-scaffold_63-1491911889:781679..782569 | Clytia hemisphaerica | exon |
| TCONS_00071686-exon-scaffold_63-1510915933:781679..782569 | TCONS_00071686-exon-scaffold_63-1510915933:781679..782569 | Clytia hemisphaerica | exon |
| TCONS_00071686-exon-scaffold_63-1575043694:781679..782569 | TCONS_00071686-exon-scaffold_63-1575043694:781679..782569 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:781679..782569 + |
Blast
BLAST of TCONS_00071686 vs. Swiss-Prot (Human)
Match: MMSA (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Homo sapiens GN=ALDH6A1 PE=1 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 1.916e-29 Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 3 Query: 606 QAIEIINNNKYGNGTAIFTNSGSAARKFTQEVDVGQIGVNVPIPVPLPMFSFTGSRGSFRGDLNFYGK 809
+AI+I+NNN YGNGTAIFT +G+ ARK+ VDVGQ+GVNVPIPVPLPMFSFTGSR SFRGD NFYGK
Sbjct: 433 EAIQIVNNNPYGNGTAIFTTNGATARKYAHLVDVGQVGVNVPIPVPLPMFSFTGSRSSFRGDTNFYGK 500
The following BLAST results are available for this feature:
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