TCONS_00071683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071683
Unique NameTCONS_00071683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length216

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071683 ID=TCONS_00071683|Name=TCONS_00071683|organism=Clytia hemisphaerica|type=transcript|length=216bp
gtttttttcaATGATTCTTATATGATAAACCTTTCTTTCTCTTTGGTTTC
TGTTAAGCAACACACATCTCCAGGTTTACATCATGGCTCAGCTCTGTTCC
CGTGTCTTCAAAACTGCTGCCAAAAGCAACAATGCTGGCATCTGGAGACG
ATGTTACTCAGGAGCCACTCCCACAACCAAATTGTTGATCAATGGAGAGT
TTGTGGAGAGTANACA
Run BLAST on NCBI

transcript from alignment at scaffold_63:772805..773499+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071683 ID=TCONS_00071683|Name=TCONS_00071683|organism=Clytia hemisphaerica|type=transcript|length=695bp|location=Sequence derived from alignment at scaffold_63:772805..773499+ (Clytia hemisphaerica)
gtttttttcaATGATTCTTATATGATAAACCTTTCTTTCTCTTTGGTTTC
TGTTAAGCAACACACATCTCCAGGTTTACATCATGGCTCAGCTCTGTTCC
CGTGTCTTCAAAACTGCTGCCAAAAGCAACGTAAGTTACACTCCTAAACA
TATTTTTACCTGTATCCTTTTCACATACAAAGGAATGTAATGTCCTACCT
TTCATACACTTTTTCATTAATTCGGTTGCTCGATTACATAACTTATCTCC
AAAGCGAACTTCAATcaaaattctaactttcaacaAATATTTCTACTCCA
AGCTggaacacaacgttgtttcaacgtttatctgaTGTCTCAACGTCcct
ataacgttagatgaacgtttaaACAACATTGTTGGTTGCCAACTGGGCTA
TCTAAGAAAACACGTGCTTCTTTTTTAGAATGCTGGCATCTGGAGACGAT
GTTACTCAGGAGCCACTGTAtgttaaatttatttgatacTTTCTTGATCT
CTGATTCTCAATATTTTCGCATTTCTTGCCTCCTATGAACAACATGTAAT
GTTATCTAATTTATATTGCCTGTTACTGCTCGGTGACTCACTCATTAGAA
TCGAGTAAGAATCCTTCATTCATCTtatcctttttatttttaatcaagCC
CACAACCAAATTGTTGATCAATGGAGAGTTTGTGGAGAGTANACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044528XLOC_044528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071683-exon-scaffold_63-1491911889:772805..772934TCONS_00071683-exon-scaffold_63-1491911889:772805..772934Clytia hemisphaericaexon
TCONS_00071683-exon-scaffold_63-1510915933:772805..772934TCONS_00071683-exon-scaffold_63-1510915933:772805..772934Clytia hemisphaericaexon
TCONS_00071683-exon-scaffold_63-1575043694:772805..772934TCONS_00071683-exon-scaffold_63-1575043694:772805..772934Clytia hemisphaericaexon
TCONS_00071683-exon-scaffold_63-1491911889:773233..773271TCONS_00071683-exon-scaffold_63-1491911889:773233..773271Clytia hemisphaericaexon
TCONS_00071683-exon-scaffold_63-1510915933:773233..773271TCONS_00071683-exon-scaffold_63-1510915933:773233..773271Clytia hemisphaericaexon
TCONS_00071683-exon-scaffold_63-1575043694:773233..773271TCONS_00071683-exon-scaffold_63-1575043694:773233..773271Clytia hemisphaericaexon
TCONS_00071683-exon-scaffold_63-1491911889:773453..773499TCONS_00071683-exon-scaffold_63-1491911889:773453..773499Clytia hemisphaericaexon
TCONS_00071683-exon-scaffold_63-1510915933:773453..773499TCONS_00071683-exon-scaffold_63-1510915933:773453..773499Clytia hemisphaericaexon
TCONS_00071683-exon-scaffold_63-1575043694:773453..773499TCONS_00071683-exon-scaffold_63-1575043694:773453..773499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:772805..773499 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.28332	0	0	1.77471	2.8048	60.9098	106.126	46.577	45.3303	78.6643	89.3984	183.8	286.317	177.851	302.331	159.056	131.637	104.921	92.2255	99.2466	102.404	61.8653	75.45	323.563	118.536	39.6992	69.3296	283.37	282.756
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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