TCONS_00071646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071646
Unique NameTCONS_00071646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071646 ID=TCONS_00071646|Name=TCONS_00071646|organism=Clytia hemisphaerica|type=transcript|length=1056bp
TCTAGCGACTCTTAAACgttcaaaacaaactttgagcagacaaaaataaa
ttttaaaaaatggatCAAAAAGGAGAAGCACCGCCATACTACCCACCGAC
ATCTGAGCCTCAATATCCACCAACATCTCAACCCTACTACCCACCCACCT
CTCAACCGCAGTACCCACCTACCTCTCAACCGCAGTATCCACCCACCTCC
CAACCTGGGTATGGCGGATACCCACCGCCCATGGATGTGAAATACCCACC
ACAACCACCAGGCTACGCACCTGTACAACAACCTATGCAACAGAGTCAAA
TGTCATCTAACAACACCACTGTTATCATGGCGGGCGGTATGGCCGCCCCA
CAACCACAAACACAAATTATCCGTGAAGTCCCTTCAAATTATATGGCCTT
ATCATGGATTGTCTGTCTGTTCTGTTGTTGGCCAATCGGTATCGCCGCCA
TTATGGCTTCATCAAGGGTCGACACTGCAGTTGCCGTTGGTAATTTCGCC
GAAGCTAAAGCACAATCAAACCGCGCAAAGGGTCTGGGAATAGCTGGTCT
GGTCTGTGGAATTGTCATCATCACTTTGGTCATCATAAGATTCACTGTTT
TGGTGTCTGTCTACTCAGATAATTACTATAATTAAAAGCTTAAAAACATA
AAAATTGGCACCGTTATTTTAATATTTCTCTAGATTTACACATttttttt
ttataagaaaacaagGCTTACTTTGATTTATGTAATTCGTAAAAAACAAC
TATGCACTAGCTGATTTTATGGTATTTAAAAGACTCTTGCATCACTGACC
CCGTTGGTACCCATTGAAATTTCACCATCAAAGAATTTATCATGTATAAT
TGATTTGGTCAAGGAATATtttggttttttaaatttttccgtCATTTTTT
TCGTTagctttgtaaatattttctaaacGACAGCATACATACAAAAACAG
GTATTATATTGACTGTGATTTGTATGTGTAgattcaaaatatcaaaacaa
gttTTTGTGTAATAAAAATCGCTTCATCTATAAGTTTGAACAATTTAGAA
TCTGGC
Run BLAST on NCBI

transcript from alignment at scaffold_63:386675..389676+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071646 ID=TCONS_00071646|Name=TCONS_00071646|organism=Clytia hemisphaerica|type=transcript|length=3002bp|location=Sequence derived from alignment at scaffold_63:386675..389676+ (Clytia hemisphaerica)
TCTAGCGACTCTTAAACgttcaaaacaaactttgagcagacaaaaataaa ttttaaaaaatggatCAAAAAGGAGGTAAGATATACTATTTAACTATCAA ACTATTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNTGTTCTTATTTATAATGTGAAATTAAGGTATTCTAGGA TTTAAACCCAATCTTTACTTCTTTTActcctaaattgcttgaaatttagt aattccaggctcagtaagtattgttcttaaattgttcttattttttttgg cgaTCTTAAGCCTCAGTTTTCTAATAAAACTGTAAATTTGAAGTACTGTA TTAATCTACATAGTTAACAACCAATCCCAAGCAGGTTCAAACTGACCTAT TAGCTAACGACCCGATTACCCCTGTCCCATAGCAAGTCAAGGAAATCTCT CGATTGcggtagtaattttttattgtaaCTGCGGTGTAAACATCGCTTCA TTTAACCTTTATTTCATATCTAGAAGCACCGCCATACTACCCACCGACAT CTGAGCCTCAATATCCACCAACATCTCAACCCTACTACCCACCCACCTCT CAACCGCAGTACCCACCTACCTCTCAACCGCAGTATCCACCCACCTCCCA ACCTGGGTATGGCGGATACCCACCGCCCATGGATGTGAAATACCCACCAC AACCACCAGGCTACGCACCTGTACAACAACCTATGCAACAGGTATATCGA TCATAATTGCgagctttcttctttttttttcttttccattttttgaccaA ACAAAGTCTTTCGTTTAgacctagcctgggaatccaagctaataatctta gaaaaaaacaaaaaacacctcacctcacaaagttctaacaTTATAGAGCT TGGTAAAGGTAGATTAgtcctccccacttttgagcaaatgagattctttt ctcaaattcctagctaATTTTAAGCCTTCAGTCTCCCCACCTAAACAGTT GTTCCGCCAGGCCTGGCTAATGACCTCTAAACCCTCTATAAAAACTCCCT GAGACAGATACTGTCACACATCCAACAGTGCGGCTTTCCTCAAATAAATT TCTCACCTATTAGAGTCAAATGTCATCTAACAACACCACTGTTATCATGG CGGGCGGTATGGCCGCCCCACAACCACAAACACAAATTATCCGTGAAGTC CCTTCAAATTATATGGCCTTATCATGGATTGTCTGTCTGTTCTGTTGTTG GCCAATCGGTATCGCCGCCATTATGGCTTCATCAAGGGTAAGCGCCTATT AAGGGAAATACATAcacttaaaaatttaatttatctagTTTTATTTATTG GATTAGAGCTCTAAGGATTCATTCATATGGTGCTAAAAGAAAGCTGTTTG AGACATTTGCGAtaaactttttcataaattacgtcacggacatcacttgc ctcgttttcaaacaattaccatggtgattatgtcgcTTGAGACAGTAaat gattttcttataaaaagaaagtagttttaataaaatccgctgggagttaa tcaccatggcaataatttcaaaacgaggcaagtgatgttcgtggcGTAAT TTATGAAAAGGTCTATTAGAAAAAATTATTCTTATATCGATTAGTCAAAG AGTATTTTGGGCTTGTATAATTGTAATTAACGAGATCATTCACACATTCG ATTAATTTTTTAGGTCGACACTGCAGTTGCCGTTGGTAATTTCGCCGAAG CTAAAGCACAATCAAACCGCGCAAAGGGTCTGGGAATAGCTGGTCTGGTC TGTGGAATTGTCATCATCACTTTGGTCATCATAAGATTCACTGTTTTGGT GTCTGTCTACTCAGATAATTACTATAATTAAAAGCTTAAAAACATAAAAA TTGGCACCGTTATTTTAATATTTCTCTAGATTTACACATtttttttttat aagaaaacaagGCTTACTTTGATTTATGTAATTCGTAAAAAACAACTATG CACTAGCTGATTTTATGGTATTTAAAAGACTCTTGCATCACTGACCCCGT TGGTACCCATTGAAATTTCACCATCAAAGAATTTATCATGTATAATTGAT TTGGTCAAGGAATATtttggttttttaaatttttccgtCATTTTTTTCGT TagctttgtaaatattttctaaacGACAGCATACATACAAAAACAGGTAT TATATTGACTGTGATTTGTATGTGTAgattcaaaatatcaaaacaagttT TTGTGTAATAAAAATCGCTTCATCTATAAGTTTGAACAATTTAGAATCTG GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044518XLOC_044518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071646-exon-scaffold_63-1491911889:386675..386749TCONS_00071646-exon-scaffold_63-1491911889:386675..386749Clytia hemisphaericaexon
TCONS_00071646-exon-scaffold_63-1510915933:386675..386749TCONS_00071646-exon-scaffold_63-1510915933:386675..386749Clytia hemisphaericaexon
TCONS_00071646-exon-scaffold_63-1575043694:386675..386749TCONS_00071646-exon-scaffold_63-1575043694:386675..386749Clytia hemisphaericaexon
TCONS_00071646-exon-scaffold_63-1491911889:387898..388115TCONS_00071646-exon-scaffold_63-1491911889:387898..388115Clytia hemisphaericaexon
TCONS_00071646-exon-scaffold_63-1510915933:387898..388115TCONS_00071646-exon-scaffold_63-1510915933:387898..388115Clytia hemisphaericaexon
TCONS_00071646-exon-scaffold_63-1575043694:387898..388115TCONS_00071646-exon-scaffold_63-1575043694:387898..388115Clytia hemisphaericaexon
TCONS_00071646-exon-scaffold_63-1491911889:388488..388661TCONS_00071646-exon-scaffold_63-1491911889:388488..388661Clytia hemisphaericaexon
TCONS_00071646-exon-scaffold_63-1510915933:388488..388661TCONS_00071646-exon-scaffold_63-1510915933:388488..388661Clytia hemisphaericaexon
TCONS_00071646-exon-scaffold_63-1575043694:388488..388661TCONS_00071646-exon-scaffold_63-1575043694:388488..388661Clytia hemisphaericaexon
TCONS_00071646-exon-scaffold_63-1491911889:389088..389676TCONS_00071646-exon-scaffold_63-1491911889:389088..389676Clytia hemisphaericaexon
TCONS_00071646-exon-scaffold_63-1510915933:389088..389676TCONS_00071646-exon-scaffold_63-1510915933:389088..389676Clytia hemisphaericaexon
TCONS_00071646-exon-scaffold_63-1575043694:389088..389676TCONS_00071646-exon-scaffold_63-1575043694:389088..389676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:386675..389676 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.163383 0.0613902 0 0.225944 0.133908 1.23858 1.32564 2.33703 3.65937 6.05831 1.97414 114.289 104.81 128.32 177.342 116.915 94.1889 153.07 137.11 10.2055 10.6471 48.5781 59.5178 26.526 44.6994 23.5193 26.3962 122.64 109.956
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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