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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071646 ID=TCONS_00071646|Name=TCONS_00071646|organism=Clytia hemisphaerica|type=transcript|length=1056bp
TCTAGCGACTCTTAAACgttcaaaacaaactttgagcagacaaaaataaa
ttttaaaaaatggatCAAAAAGGAGAAGCACCGCCATACTACCCACCGAC
ATCTGAGCCTCAATATCCACCAACATCTCAACCCTACTACCCACCCACCT
CTCAACCGCAGTACCCACCTACCTCTCAACCGCAGTATCCACCCACCTCC
CAACCTGGGTATGGCGGATACCCACCGCCCATGGATGTGAAATACCCACC
ACAACCACCAGGCTACGCACCTGTACAACAACCTATGCAACAGAGTCAAA
TGTCATCTAACAACACCACTGTTATCATGGCGGGCGGTATGGCCGCCCCA
CAACCACAAACACAAATTATCCGTGAAGTCCCTTCAAATTATATGGCCTT
ATCATGGATTGTCTGTCTGTTCTGTTGTTGGCCAATCGGTATCGCCGCCA
TTATGGCTTCATCAAGGGTCGACACTGCAGTTGCCGTTGGTAATTTCGCC
GAAGCTAAAGCACAATCAAACCGCGCAAAGGGTCTGGGAATAGCTGGTCT
GGTCTGTGGAATTGTCATCATCACTTTGGTCATCATAAGATTCACTGTTT
TGGTGTCTGTCTACTCAGATAATTACTATAATTAAAAGCTTAAAAACATA
AAAATTGGCACCGTTATTTTAATATTTCTCTAGATTTACACATttttttt
ttataagaaaacaagGCTTACTTTGATTTATGTAATTCGTAAAAAACAAC
TATGCACTAGCTGATTTTATGGTATTTAAAAGACTCTTGCATCACTGACC
CCGTTGGTACCCATTGAAATTTCACCATCAAAGAATTTATCATGTATAAT
TGATTTGGTCAAGGAATATtttggttttttaaatttttccgtCATTTTTT
TCGTTagctttgtaaatattttctaaacGACAGCATACATACAAAAACAG
GTATTATATTGACTGTGATTTGTATGTGTAgattcaaaatatcaaaacaa
gttTTTGTGTAATAAAAATCGCTTCATCTATAAGTTTGAACAATTTAGAA
TCTGGC Run BLAST on NCBI transcript from alignment at scaffold_63:386675..389676+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071646 ID=TCONS_00071646|Name=TCONS_00071646|organism=Clytia hemisphaerica|type=transcript|length=3002bp|location=Sequence derived from alignment at scaffold_63:386675..389676+ (Clytia hemisphaerica)
TCTAGCGACTCTTAAACgttcaaaacaaactttgagcagacaaaaataaa
ttttaaaaaatggatCAAAAAGGAGGTAAGATATACTATTTAACTATCAA
ACTATTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTGTTCTTATTTATAATGTGAAATTAAGGTATTCTAGGA
TTTAAACCCAATCTTTACTTCTTTTActcctaaattgcttgaaatttagt
aattccaggctcagtaagtattgttcttaaattgttcttattttttttgg
cgaTCTTAAGCCTCAGTTTTCTAATAAAACTGTAAATTTGAAGTACTGTA
TTAATCTACATAGTTAACAACCAATCCCAAGCAGGTTCAAACTGACCTAT
TAGCTAACGACCCGATTACCCCTGTCCCATAGCAAGTCAAGGAAATCTCT
CGATTGcggtagtaattttttattgtaaCTGCGGTGTAAACATCGCTTCA
TTTAACCTTTATTTCATATCTAGAAGCACCGCCATACTACCCACCGACAT
CTGAGCCTCAATATCCACCAACATCTCAACCCTACTACCCACCCACCTCT
CAACCGCAGTACCCACCTACCTCTCAACCGCAGTATCCACCCACCTCCCA
ACCTGGGTATGGCGGATACCCACCGCCCATGGATGTGAAATACCCACCAC
AACCACCAGGCTACGCACCTGTACAACAACCTATGCAACAGGTATATCGA
TCATAATTGCgagctttcttctttttttttcttttccattttttgaccaA
ACAAAGTCTTTCGTTTAgacctagcctgggaatccaagctaataatctta
gaaaaaaacaaaaaacacctcacctcacaaagttctaacaTTATAGAGCT
TGGTAAAGGTAGATTAgtcctccccacttttgagcaaatgagattctttt
ctcaaattcctagctaATTTTAAGCCTTCAGTCTCCCCACCTAAACAGTT
GTTCCGCCAGGCCTGGCTAATGACCTCTAAACCCTCTATAAAAACTCCCT
GAGACAGATACTGTCACACATCCAACAGTGCGGCTTTCCTCAAATAAATT
TCTCACCTATTAGAGTCAAATGTCATCTAACAACACCACTGTTATCATGG
CGGGCGGTATGGCCGCCCCACAACCACAAACACAAATTATCCGTGAAGTC
CCTTCAAATTATATGGCCTTATCATGGATTGTCTGTCTGTTCTGTTGTTG
GCCAATCGGTATCGCCGCCATTATGGCTTCATCAAGGGTAAGCGCCTATT
AAGGGAAATACATAcacttaaaaatttaatttatctagTTTTATTTATTG
GATTAGAGCTCTAAGGATTCATTCATATGGTGCTAAAAGAAAGCTGTTTG
AGACATTTGCGAtaaactttttcataaattacgtcacggacatcacttgc
ctcgttttcaaacaattaccatggtgattatgtcgcTTGAGACAGTAaat
gattttcttataaaaagaaagtagttttaataaaatccgctgggagttaa
tcaccatggcaataatttcaaaacgaggcaagtgatgttcgtggcGTAAT
TTATGAAAAGGTCTATTAGAAAAAATTATTCTTATATCGATTAGTCAAAG
AGTATTTTGGGCTTGTATAATTGTAATTAACGAGATCATTCACACATTCG
ATTAATTTTTTAGGTCGACACTGCAGTTGCCGTTGGTAATTTCGCCGAAG
CTAAAGCACAATCAAACCGCGCAAAGGGTCTGGGAATAGCTGGTCTGGTC
TGTGGAATTGTCATCATCACTTTGGTCATCATAAGATTCACTGTTTTGGT
GTCTGTCTACTCAGATAATTACTATAATTAAAAGCTTAAAAACATAAAAA
TTGGCACCGTTATTTTAATATTTCTCTAGATTTACACATtttttttttat
aagaaaacaagGCTTACTTTGATTTATGTAATTCGTAAAAAACAACTATG
CACTAGCTGATTTTATGGTATTTAAAAGACTCTTGCATCACTGACCCCGT
TGGTACCCATTGAAATTTCACCATCAAAGAATTTATCATGTATAATTGAT
TTGGTCAAGGAATATtttggttttttaaatttttccgtCATTTTTTTCGT
TagctttgtaaatattttctaaacGACAGCATACATACAAAAACAGGTAT
TATATTGACTGTGATTTGTATGTGTAgattcaaaatatcaaaacaagttT
TTGTGTAATAAAAATCGCTTCATCTATAAGTTTGAACAATTTAGAATCTG
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071646-exon-scaffold_63-1491911889:386675..386749 | TCONS_00071646-exon-scaffold_63-1491911889:386675..386749 | Clytia hemisphaerica | exon |
| TCONS_00071646-exon-scaffold_63-1510915933:386675..386749 | TCONS_00071646-exon-scaffold_63-1510915933:386675..386749 | Clytia hemisphaerica | exon |
| TCONS_00071646-exon-scaffold_63-1575043694:386675..386749 | TCONS_00071646-exon-scaffold_63-1575043694:386675..386749 | Clytia hemisphaerica | exon |
| TCONS_00071646-exon-scaffold_63-1491911889:387898..388115 | TCONS_00071646-exon-scaffold_63-1491911889:387898..388115 | Clytia hemisphaerica | exon |
| TCONS_00071646-exon-scaffold_63-1510915933:387898..388115 | TCONS_00071646-exon-scaffold_63-1510915933:387898..388115 | Clytia hemisphaerica | exon |
| TCONS_00071646-exon-scaffold_63-1575043694:387898..388115 | TCONS_00071646-exon-scaffold_63-1575043694:387898..388115 | Clytia hemisphaerica | exon |
| TCONS_00071646-exon-scaffold_63-1491911889:388488..388661 | TCONS_00071646-exon-scaffold_63-1491911889:388488..388661 | Clytia hemisphaerica | exon |
| TCONS_00071646-exon-scaffold_63-1510915933:388488..388661 | TCONS_00071646-exon-scaffold_63-1510915933:388488..388661 | Clytia hemisphaerica | exon |
| TCONS_00071646-exon-scaffold_63-1575043694:388488..388661 | TCONS_00071646-exon-scaffold_63-1575043694:388488..388661 | Clytia hemisphaerica | exon |
| TCONS_00071646-exon-scaffold_63-1491911889:389088..389676 | TCONS_00071646-exon-scaffold_63-1491911889:389088..389676 | Clytia hemisphaerica | exon |
| TCONS_00071646-exon-scaffold_63-1510915933:389088..389676 | TCONS_00071646-exon-scaffold_63-1510915933:389088..389676 | Clytia hemisphaerica | exon |
| TCONS_00071646-exon-scaffold_63-1575043694:389088..389676 | TCONS_00071646-exon-scaffold_63-1575043694:389088..389676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:386675..389676 + |
Blast
The following BLAST results are available for this feature:
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