TCONS_00071645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071645
Unique NameTCONS_00071645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071645 ID=TCONS_00071645|Name=TCONS_00071645|organism=Clytia hemisphaerica|type=transcript|length=1236bp
ATTAAAATCAGCACTAATAAACAGTCTGTCTATGGTACTTTTTGTAACAT
GATACCTCCCCACTTATTCATAGAATTCGTATGTACTTTACATAGGAATC
TATTTTTCTACAAGAATATAGATCCCGTTCCTATTCTTTTCTTAGGAAAA
ATCTTAACAATACCATAAAACTATTCAGAGGTGGTTTTAATTGTGACTTA
CTATTACAAATGCATTTATCCAAGTTTCCAGCTGTCAACATCACAAGGGA
TGAAGAAGCACCGCCATACTACCCACCGACATCTGAGCCTCAATATCCAC
CAACATCTCAACCCTACTACCCACCCACCTCTCAACCGCAGTACCCACCT
ACCTCTCAACCGCAGTATCCACCCACCTCCCAACCTGGGTATGGCGGATA
CCCACCGCCCATGGATGTGAAATACCCACCACAACCACCAGGCTACGCAC
CTGTACAACAACCTATGCAACAGAGTCAAATGTCATCTAACAACACCACT
GTTATCATGGCGGGCGGTATGGCCGCCCCACAACCACAAACACAAATTAT
CCGTGAAGTCCCTTCAAATTATATGGCCTTATCATGGATTGTCTGTCTGT
TCTGTTGTTGGCCAATCGGTATCGCCGCCATTATGGCTTCATCAAGGGTC
GACACTGCAGTTGCCGTTGGTAATTTCGCCGAAGCTAAAGCACAATCAAA
CCGCGCAAAGGGTCTGGGAATAGCTGGTCTGGTCTGTGGAATTGTCATCA
TCACTTTGGTCATCATAAGATTCACTGTTTTGGTGTCTGTCTACTCAGAT
AATTACTATAATTAAAAGCTTAAAAACATAAAAATTGGCACCGTTATTTT
AATATTTCTCTAGATTTACACATtttttttttataagaaaacaagGCTTA
CTTTGATTTATGTAATTCGTAAAAAACAACTATGCACTAGCTGATTTTAT
GGTATTTAAAAGACTCTTGCATCACTGACCCCGTTGGTACCCATTGAAAT
TTCACCATCAAAGAATTTATCATGTATAATTGATTTGGTCAAGGAATATt
ttggttttttaaatttttccgtCATTTTTTTCGTTagctttgtaaatatt
ttctaaacGACAGCATACATACAAAAACAGGTATTATATTGACTGTGATT
TGTATGTGTAgattcaaaatatcaaaacaagttTTTGTGTAATAAAAATC
GCTTCATCTATAAGTTTGAACAATTTAGAATCTGGC
Run BLAST on NCBI

transcript from alignment at scaffold_63:385575..389676+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071645 ID=TCONS_00071645|Name=TCONS_00071645|organism=Clytia hemisphaerica|type=transcript|length=4102bp|location=Sequence derived from alignment at scaffold_63:385575..389676+ (Clytia hemisphaerica)
ATTAAAATCAGCACTAATAAACAGTCTGTCTATGGTACTTTTTGTAACAT
GATACCTCCCCACTTATTCATAGAATTCGTATGTACTTTACATAGGAATC
TATTTTTCTACAAGAATATAGATCCCGTTCCTATTCTTTTCTTAGGAAAA
ATCTTAACAATACCATAAAACTATTCAGAGGTGGTTTTAATTGTGACTTA
CTATTACAAATGCATTTATCCAAGTTTCCAGCTGTCAACATCACAAGGGA
TGAAGGTATGTTAACCTGGCAGAAGCTCTtttaaaattgacgtcaaagaa
CGCTAACGAGGAACACCTAGGCTAATTTTATGGCGGTCGGGAATCTATTA
AGTAAGACCACAGTCGAGGCCAGTCGAGGGTGACCCGActagctatctac
ccaaagtTAGGGAGGGCGCCACTCATTCTCCCTAGATGGTCCCACTTACC
AATGATTCTTCTCTTtggttgctgagcatcaagcaacaaggcatcaagta
ccatttgtAATACCATCTTTGGTATGATCCGGCCGGGGATCGAACCTTTA
ACCTTGCGCACCTTGCGCACCATACCGTCAGTTTACCAACTGaggaaaaa
aatggcttttagaattgcacctttacagtgcagaaaaaaatcggtgaaat
tcatacccttacagtgtattctttcaaattttaaactcttttagagcaaa
aaaaatcaagatttttgagcaaaaattagcaatttttcctagatttgctg
aaatttccacccatacagtgcatttatcaaaagcccacccttacagtgca
tttatgatattttgaaaaacatacccttaaccgccgcacatacccgtcgg
tcggtcaatttgcctgactgcccccccccccggggggcgTTTGGGATAAA
ATATTGAGGTGTAACCCGATTTCACTTACATAAATTACTTTCTTAGTAAA
AAAAGGCAAGATGATTCTTATGAGTAGATTCAGGTCCTTAAAATGTTGTT
TATAAAGTAAACTATTGTGTAAAtactttttcaacaaaaaacaaatagaa
CAAATTCGTTGATTCTTCACGATGTAACACGATTAGTTCAAAAGTCTTAT
TCTAGCGACTCTTAAACgttcaaaacaaactttgagcagacaaaaataaa
ttttaaaaaatggatCAAAAAGGAGGTAAGATATACTATTTAACTATCAA
ACTATTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTGTTCTTATTTATAATGTGAAATTAAGGTATTCTAGGA
TTTAAACCCAATCTTTACTTCTTTTActcctaaattgcttgaaatttagt
aattccaggctcagtaagtattgttcttaaattgttcttattttttttgg
cgaTCTTAAGCCTCAGTTTTCTAATAAAACTGTAAATTTGAAGTACTGTA
TTAATCTACATAGTTAACAACCAATCCCAAGCAGGTTCAAACTGACCTAT
TAGCTAACGACCCGATTACCCCTGTCCCATAGCAAGTCAAGGAAATCTCT
CGATTGcggtagtaattttttattgtaaCTGCGGTGTAAACATCGCTTCA
TTTAACCTTTATTTCATATCTAGAAGCACCGCCATACTACCCACCGACAT
CTGAGCCTCAATATCCACCAACATCTCAACCCTACTACCCACCCACCTCT
CAACCGCAGTACCCACCTACCTCTCAACCGCAGTATCCACCCACCTCCCA
ACCTGGGTATGGCGGATACCCACCGCCCATGGATGTGAAATACCCACCAC
AACCACCAGGCTACGCACCTGTACAACAACCTATGCAACAGGTATATCGA
TCATAATTGCgagctttcttctttttttttcttttccattttttgaccaA
ACAAAGTCTTTCGTTTAgacctagcctgggaatccaagctaataatctta
gaaaaaaacaaaaaacacctcacctcacaaagttctaacaTTATAGAGCT
TGGTAAAGGTAGATTAgtcctccccacttttgagcaaatgagattctttt
ctcaaattcctagctaATTTTAAGCCTTCAGTCTCCCCACCTAAACAGTT
GTTCCGCCAGGCCTGGCTAATGACCTCTAAACCCTCTATAAAAACTCCCT
GAGACAGATACTGTCACACATCCAACAGTGCGGCTTTCCTCAAATAAATT
TCTCACCTATTAGAGTCAAATGTCATCTAACAACACCACTGTTATCATGG
CGGGCGGTATGGCCGCCCCACAACCACAAACACAAATTATCCGTGAAGTC
CCTTCAAATTATATGGCCTTATCATGGATTGTCTGTCTGTTCTGTTGTTG
GCCAATCGGTATCGCCGCCATTATGGCTTCATCAAGGGTAAGCGCCTATT
AAGGGAAATACATAcacttaaaaatttaatttatctagTTTTATTTATTG
GATTAGAGCTCTAAGGATTCATTCATATGGTGCTAAAAGAAAGCTGTTTG
AGACATTTGCGAtaaactttttcataaattacgtcacggacatcacttgc
ctcgttttcaaacaattaccatggtgattatgtcgcTTGAGACAGTAaat
gattttcttataaaaagaaagtagttttaataaaatccgctgggagttaa
tcaccatggcaataatttcaaaacgaggcaagtgatgttcgtggcGTAAT
TTATGAAAAGGTCTATTAGAAAAAATTATTCTTATATCGATTAGTCAAAG
AGTATTTTGGGCTTGTATAATTGTAATTAACGAGATCATTCACACATTCG
ATTAATTTTTTAGGTCGACACTGCAGTTGCCGTTGGTAATTTCGCCGAAG
CTAAAGCACAATCAAACCGCGCAAAGGGTCTGGGAATAGCTGGTCTGGTC
TGTGGAATTGTCATCATCACTTTGGTCATCATAAGATTCACTGTTTTGGT
GTCTGTCTACTCAGATAATTACTATAATTAAAAGCTTAAAAACATAAAAA
TTGGCACCGTTATTTTAATATTTCTCTAGATTTACACATtttttttttat
aagaaaacaagGCTTACTTTGATTTATGTAATTCGTAAAAAACAACTATG
CACTAGCTGATTTTATGGTATTTAAAAGACTCTTGCATCACTGACCCCGT
TGGTACCCATTGAAATTTCACCATCAAAGAATTTATCATGTATAATTGAT
TTGGTCAAGGAATATtttggttttttaaatttttccgtCATTTTTTTCGT
TagctttgtaaatattttctaaacGACAGCATACATACAAAAACAGGTAT
TATATTGACTGTGATTTGTATGTGTAgattcaaaatatcaaaacaagttT
TTGTGTAATAAAAATCGCTTCATCTATAAGTTTGAACAATTTAGAATCTG
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044518XLOC_044518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071645-exon-scaffold_63-1491911889:385575..385829TCONS_00071645-exon-scaffold_63-1491911889:385575..385829Clytia hemisphaericaexon
TCONS_00071645-exon-scaffold_63-1510915933:385575..385829TCONS_00071645-exon-scaffold_63-1510915933:385575..385829Clytia hemisphaericaexon
TCONS_00071645-exon-scaffold_63-1575043694:385575..385829TCONS_00071645-exon-scaffold_63-1575043694:385575..385829Clytia hemisphaericaexon
TCONS_00071645-exon-scaffold_63-1491911889:387898..388115TCONS_00071645-exon-scaffold_63-1491911889:387898..388115Clytia hemisphaericaexon
TCONS_00071645-exon-scaffold_63-1510915933:387898..388115TCONS_00071645-exon-scaffold_63-1510915933:387898..388115Clytia hemisphaericaexon
TCONS_00071645-exon-scaffold_63-1575043694:387898..388115TCONS_00071645-exon-scaffold_63-1575043694:387898..388115Clytia hemisphaericaexon
TCONS_00071645-exon-scaffold_63-1491911889:388488..388661TCONS_00071645-exon-scaffold_63-1491911889:388488..388661Clytia hemisphaericaexon
TCONS_00071645-exon-scaffold_63-1510915933:388488..388661TCONS_00071645-exon-scaffold_63-1510915933:388488..388661Clytia hemisphaericaexon
TCONS_00071645-exon-scaffold_63-1575043694:388488..388661TCONS_00071645-exon-scaffold_63-1575043694:388488..388661Clytia hemisphaericaexon
TCONS_00071645-exon-scaffold_63-1491911889:389088..389676TCONS_00071645-exon-scaffold_63-1491911889:389088..389676Clytia hemisphaericaexon
TCONS_00071645-exon-scaffold_63-1510915933:389088..389676TCONS_00071645-exon-scaffold_63-1510915933:389088..389676Clytia hemisphaericaexon
TCONS_00071645-exon-scaffold_63-1575043694:389088..389676TCONS_00071645-exon-scaffold_63-1575043694:389088..389676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:385575..389676 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.172725	0	0.223165	0.382666	0	0	0	0.237231	0	0.158853	0	0.238844	4.69457	3.20996	1.87166	5.66853	2.9188	1.82655	2.88945	2.3204	0	1.89387	11.2124	14.2912	43.4006	41.2321	6.75383	3.77619	11.1373	8.04108
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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