TCONS_00071633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071633
Unique NameTCONS_00071633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1115

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071633 ID=TCONS_00071633|Name=TCONS_00071633|organism=Clytia hemisphaerica|type=transcript|length=1115bp
TTGTTGTTCCATTTCTCATTCATCTGTTTGATTGACTCGGGGCAAAGCAG
TAGGGTCTTTGAAAAGGTGTTTTTCATTCTTTAAGCACGCTGTACAACTG
CCCTATGATAATCCCTCCCCTGGTGGCCATTTCAACGTCAGCTTGAACAA
TTATTACACGCCAAGCACGTAGCTTCTTACGGCGTTGAAGGTGCTGTTCG
AAGACTTTTGGTTTGACTCTGGAACACGAATGTTATCAGCACGTTTAGTT
TTGTGTTTGTATATGTAAGCACTTCTGAAGCAACTCTCCACTCCACTAAG
TCTTTATGGGAGAAAACTGGGGCTATGACACCATACACAGCTTTATCAAT
GTTATCTCTTGAATTCCCTGTTTATAACATCACTTTGTTACTCGCACCAA
GAGTCTGTAGTGCAAGGGCAATATTGATGCCGCTTTTTTTTCTGCGGCGA
CCGATTTCTTCATAGCATATAAGTTCCTAGTATTTTGCTGGATGAATGGC
CACCTTGTAATGGTTTCTTTAAAACATTCATTACCTTATCGGTCTATCTC
CCTTTCCATCTTCCTTTCCCGTCCGAcagcttttttccttttttccctgA
TTTCCTTGATCTTCCGCAAACGGGAGTTTACCCTCTTCTGGACATCTCTG
ATACATTCGCCTTTTAAAACAGAGCAtgattttaaggattttgagatttc
ttcaaAGGATATACAATCTCTGTCACtgataaaaaaaggtgtattgtttc
TGATTGTTTGAAGAACTAACGACAACTGTTGCAAAAGGTCGTTTTTCTGC
TTTGCTTGGAATAGGAGTTGTGTTTTCCTTTCCCAAGGAGGCTTCAAAAG
CGACTTGAATTTCCCAATGAATTTCTTTGCATCGCATACATATTTTTCGA
ACTGCTGATAATTCTCGTGTTCTGTCCATTCAAAGTCACATTATTTGTAA
CTTTACAGTATTTGGTGCATGTTGAAACATCAcctaaaagtaaagaaaaa
accttaagaattttaataatttctgtACCCAAAAAGAGCTCTAAGAAATG
TACgtacatattttttatttcctGATGAGTTCTACTTTTCTGATCCTTCC
AATATTCAAACTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_63:105400..106571+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071633 ID=TCONS_00071633|Name=TCONS_00071633|organism=Clytia hemisphaerica|type=transcript|length=1172bp|location=Sequence derived from alignment at scaffold_63:105400..106571+ (Clytia hemisphaerica)
TTGTTGTTCCATTTCTCATTCATCTGTTTGATTGACTCGGGGCAAAGCAG
TAGGGTCTTTGAAAAGGTGTTTTTCATTCTTTAAGCACGCTGTACAACTG
CCCTATGATAATCCCTCCCCTGGTGGCCATTTCAACGTCAGCTTGAACAA
TTATTACACGCCAAGCACGTAGCTTCTTACGGCGTTGAAGGTGCTGTTCG
AAGACTTTTGGTTTGACTCTGGAACACGAATGTTATCAGCACGTTTAGTT
TTGTGTTTGTATATGTAAGCACTTCTGAAGCAACTCTCCACTCCACTAAG
TCTTTATGGGAGAAAACTGGGGCTATGACACCATACACAGCTTTATCAAT
GTTATCTCTTGAATTCCCTGTTTATAACATCACTTTGTTACTCGCACCAA
GAGTCTGTAGTGCAAGGGCAATATTGATGCCGCTTTTTTTTCTGCGGCGA
CCGATTTCTTCATAGCATATAAGTTCCTAGTATTTTGCTGGATGAATGGC
CACCTTGTAATGGTTTCTTTAAAACATTCATTACCTTATCGGTCTATCTC
CCTTTCCATCTTCCTTTCCCGTCCGAcagcttttttccttttttccctgA
TTTCCTTGATCTTCCGCAAACGGGAGTTTACCCTCTTCTGGACATCTCTG
ATACATTCGCCTTTTAAAACAGAGCAtgattttaaggattttgagatttc
ttcaaAGGATATACAATCTCTGTCACtgataaaaaaaggtgtattgtttc
TGATTGTTTGAAGAACTAACGACAACTGTTGCAAAAGGTCGTTTTTCTGC
TTTGCTTGGAATAGGAGTTGTGTTTTCCTTTCCCAAGGAGGCTTCAAAAG
CGACTTGAATTTCCCAATGAATTTCTTTGCATCGCATACATANGGAGGCT
TCAAAAGCGAATTGAATTTCCCAATGAATTTCTTTGCATCGCATACATAT
TTTTCGAACTGCTGATAATTCTCGTGTTCTGTCCATTCAAAGTCACATTA
TTTGTAACTTTACAGTATTTGGTGCATGTTGAAACATCAcctaaaagtaa
agaaaaaaccttaagaattttaataatttctgtACCCAAAAAGAGCTCTA
AGAAATGTACgtacatattttttatttcctGATGAGTTCTACTTTTCTGA
TCCTTCCAATATTCAAACTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044512XLOC_044512Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071633-exon-scaffold_63-1491911889:105400..106288TCONS_00071633-exon-scaffold_63-1491911889:105400..106288Clytia hemisphaericaexon
TCONS_00071633-exon-scaffold_63-1510915933:105400..106288TCONS_00071633-exon-scaffold_63-1510915933:105400..106288Clytia hemisphaericaexon
TCONS_00071633-exon-scaffold_63-1575043694:105400..106288TCONS_00071633-exon-scaffold_63-1575043694:105400..106288Clytia hemisphaericaexon
TCONS_00071633-exon-scaffold_63-1491911889:106346..106571TCONS_00071633-exon-scaffold_63-1491911889:106346..106571Clytia hemisphaericaexon
TCONS_00071633-exon-scaffold_63-1510915933:106346..106571TCONS_00071633-exon-scaffold_63-1510915933:106346..106571Clytia hemisphaericaexon
TCONS_00071633-exon-scaffold_63-1575043694:106346..106571TCONS_00071633-exon-scaffold_63-1575043694:106346..106571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:105400..106571 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0783173	0.0381859	0.798074	1.21456	0.844922	0.62594	0.251723	0.47132	0.0659965	0.0408737	0.039673	0.130397	0.104173	0.0811383	0.111178	0.167035	0.176378	0	0.166506	0.217796	0.151443	0.110803	0	0.0816386	0.588601	0.262656	0.107389	0	0.0434631	0.044282
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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