TCONS_00071627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071627
Unique NameTCONS_00071627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071627 ID=TCONS_00071627|Name=TCONS_00071627|organism=Clytia hemisphaerica|type=transcript|length=611bp
CTTGATTGTCTTGGGGCAAGCAGGTGTCTTTGCAAAATGGTTTTTTCCTT
GGCATACAAAACAGGACTTCCCATTGGCTGGGCAGCGCTCAGGTTGGTGT
TCTGAGTTGCATCTGTTGCACTGTTGTTTCTTGTTTCTGTTGCTGTATCG
TCCTGCTTTCTTTAGCTTCATGATCTGGAGTGTCTGCATCATCTCCTCAA
TGTCGTCTACAGTCATATTTTCGTTGACTGACTCTGGCTTGACTCTTTTG
ATTATCTCTTTGTGTAGGTTTCGTGCATCTTCTTTGCCTGTTTCGTTGGC
CTGGCCCCATCTTGATAGTTTTTCTAGGTCTGGATCTTCTGCCAAGGCTT
TCTCTCTGGGTGATGCGTCATTCATCCCGAAGATTGCTGCGTCTTTTATG
GCTTCTTCCGTTGTGTATGGTTTCTTCGCGAAATTCAGTGTTTTAGCTTT
TCTTTCGAGGTCTCTGATAAACTCGCTCCAGCTCCTACTTCCTTGTTGTG
TGCTGAGGAGTTGGTGCATTGCCATAGTCCTGTTGACCATTTTCGACAAG
TAAAGTCGCAGCTTGTCAATCAGGTCTTTGTACGTTTGTTCTTGCTCTGC
TTCTCCTTGTT
Run BLAST on NCBI

protein sequence of TCONS_00071627-protein

>TCONS_00071627-protein ID=TCONS_00071627-protein|Name=TCONS_00071627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
QGEAEQEQTYKDLIDKLRLYLSKMVNRTMAMHQLLSTQQGSRSWSEFIRD
LERKAKTLNFAKKPYTTEEAIKDAAIFGMNDASPREKALAEDPDLEKLSR
WGQANETGKEDARNLHKEIIKRVKPESVNENMTVDDIEEMMQTLQIMKLK
KAGRYSNRNKKQQCNRCNSEHQPERCPANGKSCFVCQGKNHFAKTPACPK
TIK
Run BLAST on NCBI

transcript from alignment at scaffold_62:354332..354942

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071627 ID=TCONS_00071627|Name=TCONS_00071627|organism=Clytia hemisphaerica|type=transcript|length=611bp|location=Sequence derived from alignment at scaffold_62:354332..354942 (Clytia hemisphaerica)
AACAAGGAGAAGCAGAGCAAGAACAAACGTACAAAGACCTGATTGACAAG
CTGCGACTTTACTTGTCGAAAATGGTCAACAGGACTATGGCAATGCACCA
ACTCCTCAGCACACAACAAGGAAGTAGGAGCTGGAGCGAGTTTATCAGAG
ACCTCGAAAGAAAAGCTAAAACACTGAATTTCGCGAAGAAACCATACACA
ACGGAAGAAGCCATAAAAGACGCAGCAATCTTCGGGATGAATGACGCATC
ACCCAGAGAGAAAGCCTTGGCAGAAGATCCAGACCTAGAAAAACTATCAA
GATGGGGCCAGGCCAACGAAACAGGCAAAGAAGATGCACGAAACCTACAC
AAAGAGATAATCAAAAGAGTCAAGCCAGAGTCAGTCAACGAAAATATGAC
TGTAGACGACATTGAGGAGATGATGCAGACACTCCAGATCATGAAGCTAA
AGAAAGCAGGACGATACAGCAACAGAAACAAGAAACAACAGTGCAACAGA
TGCAACTCAGAACACCAACCTGAGCGCTGCCCAGCCAATGGGAAGTCCTG
TTTTGTATGCCAAGGAAAAAACCATTTTGCAAAGACACCTGCTTGCCCCA
AGACAATCAAG

Coding sequence (CDS) from alignment at scaffold_62:354332..354942

>TCONS_00071627 ID=TCONS_00071627|Name=TCONS_00071627|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_62:354332..354942 (Clytia hemisphaerica)
CAAGGAGAAGCAGAGCAAGAACAAACGTACAAAGACCTGATTGACAAGCT
GCGACTTTACTTGTCGAAAATGGTCAACAGGACTATGGCAATGCACCAAC
TCCTCAGCACACAACAAGGAAGTAGGAGCTGGAGCGAGTTTATCAGAGAC
CTCGAAAGAAAAGCTAAAACACTGAATTTCGCGAAGAAACCATACACAAC
GGAAGAAGCCATAAAAGACGCAGCAATCTTCGGGATGAATGACGCATCAC
CCAGAGAGAAAGCCTTGGCAGAAGATCCAGACCTAGAAAAACTATCAAGA
TGGGGCCAGGCCAACGAAACAGGCAAAGAAGATGCACGAAACCTACACAA
AGAGATAATCAAAAGAGTCAAGCCAGAGTCAGTCAACGAAAATATGACTG
TAGACGACATTGAGGAGATGATGCAGACACTCCAGATCATGAAGCTAAAG
AAAGCAGGACGATACAGCAACAGAAACAAGAAACAACAGTGCAACAGATG
CAACTCAGAACACCAACCTGAGCGCTGCCCAGCCAATGGGAAGTCCTGTT
TTGTATGCCAAGGAAAAAACCATTTTGCAAAGACACCTGCTTGCCCCAAG
ACAATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044506XLOC_044506Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071627-exon-scaffold_62-1491911889:354332..354942TCONS_00071627-exon-scaffold_62-1491911889:354332..354942Clytia hemisphaericaexon
TCONS_00071627-exon-scaffold_62-1510915933:354332..354942TCONS_00071627-exon-scaffold_62-1510915933:354332..354942Clytia hemisphaericaexon
TCONS_00071627-exon-scaffold_62-1575043694:354332..354942TCONS_00071627-exon-scaffold_62-1575043694:354332..354942Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071627-proteinTCONS_00071627-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:354332..354942 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264759	0.258182	0.999247	1.07537	0	0.376187	0.113463	0.318669	0.371846	0.368473	0.0894122	0.352656	0.528249	0.243819	0.250565	0.161337	0	0.0679054	0.093815	0	0.170656	0.37458	0	0.0919957	0.0947534	0.507391	0.363038	0.645739	0.685678	0.498998
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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