TCONS_00071609 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071609
Unique NameTCONS_00071609
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1177

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071609 ID=TCONS_00071609|Name=TCONS_00071609|organism=Clytia hemisphaerica|type=transcript|length=1177bp
TAGAAAGAGAAATAAATAATGAAATTAAACCTTGTCTCACGTGTAGTATT
TTTACTTCTGCTTAACGTGGTCTTCACATATGGCATGCCACCGATGTATG
AGGGAATTCAGCATTTTTCTGAACATTATAATCTGCCACCACTGCCATTC
AAATTTGGAAGCATGGAACCACAGTTTGATGCACCGACAATGAAAATTCA
TTACATTGAAGTTCATTcaaatttcactaaaaatatGAATAGGTTACTAA
AAGATTGGCGAAAAGAGGACAAAGACAATCCGTTAACAAAGAAGTCGTTA
TTGGACGTCATTCGAAACATTGGTCAAGTTCCTCATCAAATGAAATATGA
CCTGGAACAACAAATAGGAGgTCACTTGAACCATCTATTCTACTTTGCTA
CACTTCGAGCGAACCCAAAGAACGAAACAATGGAAATACCGAAGAAGTTA
CAAAGAGCTTTCAAACGATCGTTTGTCAATATGACTTTATTTGAGACACA
ATTTAAAGAATCCATGGATAAAGTATCGAGTGTTGGTTTTGTCTGGTTAT
GCCGTGTACCGAAACGAGATTACCTAACAGTATACCAGACAGTGGAAAAC
ACGAGTCCGCTAACATTAGCTGGTGGACTTCAACCTGTTCTTGGGATTGA
CTTATGGGAGCACGCATACTGGATCAAACACCCAAACCGAAGAGATGACT
ACTACAAAGCGTGGTGGTCAACTATTGATTGGAATAAAGTTGAACAACTC
TACCAATGGTGGAAGAATATGGAACCACGTGATGAACTATAAGCCAATCA
GATCACCTTATTTGTATCACATGAACGGCTACCATCCAATCAAATGAACG
GATTTATCGGATTAAAGAAATGTTCAATTTTGGTCATTAAGAAAAAGTCG
ATGATGTCTAAAGACATGATTTTTCTTTGTctgataaaaaaacttaaaaa
acgaatatcaagtaaaaatttcaaagttctacTCCTTTCCGACCGggaat
caattgtaaaaggggttacgcacgatacaaAAGtttcgtgttcgcaagcg
aaaaggtttttacactacataccgtaggattgctaaacttcctcattccc
agcgaaactttccAATTGCTATTGTACAACGGAAAAGGACAAAAACGCTG
CAAAAGTACATTTAAGACCGATTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00071609-protein

>TCONS_00071609-protein ID=TCONS_00071609-protein|Name=TCONS_00071609-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MKLNLVSRVVFLLLLNVVFTYGMPPMYEGIQHFSEHYNLPPLPFKFGSME
PQFDAPTMKIHYIEVHSNFTKNMNRLLKDWRKEDKDNPLTKKSLLDVIRN
IGQVPHQMKYDLEQQIGGHLNHLFYFATLRANPKNETMEIPKKLQRAFKR
SFVNMTLFETQFKESMDKVSSVGFVWLCRVPKRDYLTVYQTVENTSPLTL
AGGLQPVLGIDLWEHAYWIKHPNRRDDYYKAWWSTIDWNKVEQLYQWWKN
MEPRDEL
Run BLAST on NCBI

transcript from alignment at scaffold_62:180033..185222-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071609 ID=TCONS_00071609|Name=TCONS_00071609|organism=Clytia hemisphaerica|type=transcript|length=5190bp|location=Sequence derived from alignment at scaffold_62:180033..185222- (Clytia hemisphaerica)
TAGAAAGAGAAATAAATAATGAAATTAAACCTTGTCTCACGTGTAGTATT
TTTACTTCTGCTTAACGTGGTCTTCACATATGGCATGCCACCGATGTATG
AGGGAATTCAGCATTTTTCTGAACATTATAATCTGCCACCACTGCCATTC
AAATTTGGAAGCATGGAACCACAGTTTGATGCACCGACAATGAAAATTCA
TTACATTGAAGTTCATTCAAATTTCACTAAAAATATGAATAGGTTACTAA
AAGATTGGCGAAAAGAGGTATATGATTCTTCAATGTAAACGTTCTTCCAC
TAGCATTGTAACATTTGAGACTCAATCGTTCCAATGTAAACATTTTTCTA
CTAGCATTGTAACATTTTCGACTCAATTTTTCTAATGTTAATATTTTCCT
ACTAAGCATTATAACATTTCAAGCTCAATATTTTGGCATTTGTTGTAAAA
TTTTCTTGATTCTATGTACATTCTATTAGCATTTTTTGTGAAAACTCTGG
ACAATTGGAAATTTTAAGGTAAAAATTGACATTCATAGGTTCAGTTGCCA
AACTCCATGATGGTGTTATTCTTAGTTTTGCAAATTTTATCATGAATATT
TTTATAAAGTATTTTCTTATTTATTTTTACTGTTTCACCTCCCCCCTGGC
TTTCACCAGAATTTTGAAGGTTCCATAACTTCAAACATTGAAAAATATAT
AATTTGAGCCATTTTTAATCAGGAAGATTGAATCATTTTCTTTTACAGGA
CAAAGACAATCCGTTAACAAAGAAGTCGTTATTGGACGTCATTCGAAACA
TTGGTCAAGTTCCTCATCAAATGAAATATGACCTGGAACAACAAATAGGA
GGGTAAGCTCTAGTTTAGACGGCCAACTTTCTGTACTGCCTATTCTAATT
GAGAGTAGGCAGAAAACGGCAGTTAATTCGGCAGTTAAAATCTTTGCTTG
GAAAAGTGATTGAAAGAAGTCATTGCATTGACGTCAAAAGATGGCAATGC
ATTAACTTTAGACACCCGACTTTATGCCAACTTTAATTTACAATTAGAAT
AGACAGGGCGAAAAGTGGACCGTCTAAACTAGGGCTAAGAGGAAATCTCT
GGCTCAGTATTCCAATTACAATATTCCATGTTATTCTTTCGATTTAGCCC
TGTCATTTTCTTCTATTGCACCGGATGTTTCGTCAGAGTAATTTCTACGA
AAATGATCGACTTCATGGTTATGAAAGGTTTTTCTTAAAGAGAAATGAAA
AAAAAAACTAGTTTTGTAAAGATGATATTGAACTTTAACAATGACGTACC
CAGAGCCGCTTGCATCTCTTTTTAATTTTACTGATGACTTGATACAACCG
TGATCGTTATCAGAATCGTAAAAAAGTTAACTAAGGGACTGCGCTCAAGT
TTGAAACTTCAATTAAATCATTGTTCGATTATATTTTTAGCTTTAAAATC
TAATTTGCCTAATTTGATCAATTTTCAGTCACTTGAACCATCTATTCTAC
TTTGCTACACTTCGAGCGAACCCAAAGAACGAAACAATGGAAATACCGAA
GAAGTTACAAAGAGCTTTCAAACGATCGTTTGTCAATATGACTTTATTTG
AGACACAATTTAAAGAATCCATGGATAAAGTATCGAGTGTTGGTTTTGTC
TGGTTATGCCGTGTACCGAAACGAGATTACCTAACAGTGTAAGAATGATG
CATTGGGATTTTCCAGAAAAAAACCGTGCACCCCCTATTGAGCAGTCTNC
AGACCTGAAAACGGGAAACCGAATAGCAACATTAATGTACTATGTAAGTA
TAAATCATTCCCATATACTCTTCTATTATATTCGTATCTTTCTATAATTC
GACCTTATTCTCAGTTCCCGTCATGTACTCTCTTAAAATACTCTATGTAA
TTCAAATCTCTGTTATTCGGGCAAGTAAGATTCCCCGTTTTTGAGTTCGA
ATTACTGAGAGTCAAATTGGGCTTTTCCAGAAAAAAACCGTACACCCCTT
GTTGAGGAGTCCATTTCCATTCCAAGGGGGTATGGTTTGAAATGCAGTGG
AATTCCATAGCAGTAGACAAAAATCCGTCATAAATAAGTGGAATTCCATG
GGGGTAATGAATGAAAATCTGTAAAAATTCGGAACTCCAGAGGGGTATGA
TCCTATAATTGCCTGGAATTCCAAGGGGATAATTCACAAAAGGTTTGAGC
TCCTGGGTGGGTGTACGATTTTTTTCTGGAAAAGCCTATTTTCGAACATT
TTGAAAATAGACCTTTTCGACCGTAGTCGCGCGGGCATTTTTTGTCCGCT
TTATCCCACTAAAATCGTCCAAACTCATTTTTCTAATGTCTTTTGGTGCG
AAAAAAGGGCTGGAACGGTTTTAGCGGGATAAAGCGGACAAAAAAATGCC
CGCGTGGCAATTGGTGGCTACGGTCGAAAGATGTATAGACCCTTTTCAGA
AATTAACAATACGTTATGGTGAAAGGAGTTGGTAAATTCAAATTGTTATT
GTACAGGAGGCAGTAGGAGGCGCAATCATCATGGTTTGCACGGACGGGAA
AAATTTCAGTTTTCTAAACTTTGTTTAGGCTAAAAACGCCTTATTTTAGA
AAATTTTTTCCCGAAAGTAAAGTTGGGTTTAACACGAATACATTTACATT
TCTTCTGAACTTATAGGAGGAAAATTCTGAAGAAGGTGTTTTGTTGCTTT
GATGGCCTCGAAAGCGAGAAAACTTTTTCATAATTAAGAAAAATTGTGTA
TTTACTCAAGATCCCATGCGAGCGAAGCGAAAGGAAAAAATTGATGGATT
TATGGACTTTTTTGTAAAAGTTATTATTTGTCCACAATTGAGCTATTCCA
GAAAAAATTTGTAAGACTAAGAGATCTATCCAGATCGCTGGATTTTTTTC
CGATTTTTCAGGACCCCCTTGGATTTTTTTCACCAAATTCTTTTCTTTGG
ACCACCCTGGATTTTCGACCTCGTTATACTGAACACCCTGGATTTTCAAC
CTGATTTTACTGACCACCCTGGATTTTATCATTCACAAAACCAGACCAAC
CTGAATTTCATCATTCACAAAACCAGACCAACCTGAATTTTTTTATTTTC
CAGACCACCCTGGACGTCACACCGCCTCAACATAGGGGGTACAGATTATT
TTTGGAATAGCCCATTTTAACCTTAAGAGTGATAATCTCTCAAACTGTAT
CTCCGAAAAGGACAAGTGTCTTCTGAGGCCCTAAAAGTATCGTTTGGCTG
GATTATTTTATTTTCTGTTATGAAAAGTTAGTCATATATGTTCACATATA
AACAGTTTTCCCATCAAAGCTTTTACTGATGGGGTATGGTAGCACGTACG
CACTAAGGTGGGGTCTTCTCAAGAGCGTATGTTTGCATACAGGGGGAGGG
AATAAGGGGTCGAAGGAAAATGTACGTACGCAGAAAAAACTTTTTCATAG
CCCTTTTCTGCTTGTTTTTTGTCGACTTTTACGCTTCTTATACGTATCAT
GGAAAAGAAAAAGCTTATTGATAAGCATAAAGTTTCATGTATGAAATAAA
GGTCCAAACCAAACGATCTGAATTCGAAATTTTCTTTTTTCTTCAACCGA
GGGGGAGGGGGTGAATGAAAAAGTACGTACTTATCAGGGGAGTATAGCCA
TTTGCGTACGCTTGCGTAAAGGGGGGAGGGGGTACACGATCTTCGACATT
TTAGTGCGTACGTACTGAACGTGTTATTAAAAATTTATGTCTTTTGTATC
CCTCTTTGTTGTCTTAATTTTTCACTGGGACAGATTTGACTAGGTCACTG
ATATGCAAGATTGTTTGAAAATTACTCAGCACAAACAATAGGCAGACACG
GTCCTTATATGAAAAATGTGACTGATATGAAACGAGGACACTTATGTAAT
AATAAAACCAAACTTCTGACTTGTTAATTTCAGATACCAGACAGTGGAAA
ACACGAGTCCGCTAACATTAGCTGGTGGACTTCAACCTGTTCTTGGGATT
GACTTATGGGAGCACGCATACTGGATCAAACACCCAAACCGAAGGTATTT
CATTAGCCTGTATCGACATTCTACGGATGTTCTTAATTTTTTTCCTTTGC
CGTTTTGTATCAGACTTTTAGTCTCACCTGCATCAACGTTTTGGTGCTAA
ATTAAAACTCTAGTGCAGAAGTTTTCCAAAAAATGTACAATAGAATATCC
ATACCCTGGACCAATTTTCTATATCCCAGCCAAGCAAAATCTTTTGATTT
GATGAGCTTTTTTCTAACCCTAATGGTAGCACAACTCGATAGTGGTGCAA
ATGCATCGCACTGGGCGAAATAGGAGATTTCCCCAATCTTGGAAATATCT
TGAAAATATGATATTTCCATATACTTTTGTAAATATGACTTTTCTATATA
TCCAAAGTTGTGGAAATATCATATTTCATGATATTTCCAATTCTGAAATT
CATTGAAACATCATATTTCTAAAAGTTGGAAATATTTTGAAAATATGATA
TTTCAGATTTGGTCCAGGGTATATAAAGTTCAGTGATTACATCGGCTCAA
GAAAATTAACGAACTAAGTTGAGCTCGGGTTCGTATGCAACCAAATAAGT
ATTTGTGTACATTTTCTCTAATATAGAAATGACTATTACAAAGCANAGAA
CTTACTCACTTTTTACGCAATCAAATAAATCTTTATGTACATTTTCTCTA
TATAGAGATGACTACTACAAAGCGTGGTGGTCAACTATTGATTGGAATAA
AGTTGAACAACTCTACCAATGGTGGAAGAATATGGAACCACGTGATGAAC
TATAAGCCAATCAGATCACCTTATTTGTATCACATGAACGGCTACCATCC
AATCAAATGAACGGATTTATCGGATTAAAGAAATGTTCAATTTTGGTCAT
TAAGAAAAAGTCGATGATGTCTAAAGACATGATTTTTCTTTGTCTGATAA
AAAAACTTAAAAAACGAATATCAAGTAAAAATTTCAAAGTTCTACTCCTT
TCCGACCGGGAATCAATTGTAAAAGGGGTTACGCACGATACAAAAGTTTC
GTGTTCGCAAGCGAAAAGGTTTTTACACTACATACCGTAGGATTGCTAAA
CTTCCTCATTCCCAGCGAAACTTTCCAATTGCTATTGTACAACGGAAAAG
GACAAAAACGCTGCAAAAGTACATTTAAGACCGATTTTTG

Coding sequence (CDS) from alignment at scaffold_62:180033..185222-

>TCONS_00071609 ID=TCONS_00071609|Name=TCONS_00071609|organism=Clytia hemisphaerica|type=CDS|length=3870bp|location=Sequence derived from alignment at scaffold_62:180033..185222- (Clytia hemisphaerica)
AGATGACTACTACAAAGCGTGGTGGTCAACTATTGATTGGAATAAAGTTG
AACAACTCTACCAATGGTGGAAGAATATGGAACCACGTGATGAACTATAA
ATACCAGACAGTGGAAAACACGAGTCCGCTAACATTAGCTGGTGGACTTC
AACCTGTTCTTGGGATTGACTTATGGGAGCACGCATACTGGATCAAACAC
CCAAACCGAAGTCACTTGAACCATCTATTCTACTTTGCTACACTTCGAGC
GAACCCAAAGAACGAAACAATGGAAATACCGAAGAAGTTACAAAGAGCTT
TCAAACGATCGTTTGTCAATATGACTTTATTTGAGACACAATTTAAAGAA
TCCATGGATAAAGTATCGAGTGTTGGTTTTGTCTGGTTATGCCGTGTACC
GAAACGAGATTACCTAACAGTGACAAAGACAATCCGTTAACAAAGAAGTC
GTTATTGGACGTCATTCGAAACATTGGTCAAGTTCCTCATCAAATGAAAT
ATGACCTGGAACAACAAATAGGAGGATGAAATTAAACCTTGTCTCACGTG
TAGTATTTTTACTTCTGCTTAACGTGGTCTTCACATATGGCATGCCACCG
ATGTATGAGGGAATTCAGCATTTTTCTGAACATTATAATCTGCCACCACT
GCCATTCAAATTTGGAAGCATGGAACCACAGTTTGATGCACCGACAATGA
AAATTCATTACATTGAAGTTCATTCAAATTTCACTAAAAATATGAATAGG
TTACTAAAAGATTGGCGAAAAGAGAGATGACTACTACAAAGCGTGGTGGT
CAACTATTGATTGGAATAAAGTTGAACAACTCTACCAATGGTGGAAGAAT
ATGGAACCACGTGATGAACTATAAATACCAGACAGTGGAAAACACGAGTC
CGCTAACATTAGCTGGTGGACTTCAACCTGTTCTTGGGATTGACTTATGG
GAGCACGCATACTGGATCAAACACCCAAACCGAAGTCACTTGAACCATCT
ATTCTACTTTGCTACACTTCGAGCGAACCCAAAGAACGAAACAATGGAAA
TACCGAAGAAGTTACAAAGAGCTTTCAAACGATCGTTTGTCAATATGACT
TTATTTGAGACACAATTTAAAGAATCCATGGATAAAGTATCGAGTGTTGG
TTTTGTCTGGTTATGCCGTGTACCGAAACGAGATTACCTAACAGTGACAA
AGACAATCCGTTAACAAAGAAGTCGTTATTGGACGTCATTCGAAACATTG
GTCAAGTTCCTCATCAAATGAAATATGACCTGGAACAACAAATAGGAGGA
TGAAATTAAACCTTGTCTCACGTGTAGTATTTTTACTTCTGCTTAACGTG
GTCTTCACATATGGCATGCCACCGATGTATGAGGGAATTCAGCATTTTTC
TGAACATTATAATCTGCCACCACTGCCATTCAAATTTGGAAGCATGGAAC
CACAGTTTGATGCACCGACAATGAAAATTCATTACATTGAAGTTCATTCA
AATTTCACTAAAAATATGAATAGGTTACTAAAAGATTGGCGAAAAGAGAG
ATGACTACTACAAAGCGTGGTGGTCAACTATTGATTGGAATAAAGTTGAA
CAACTCTACCAATGGTGGAAGAATATGGAACCACGTGATGAACTATAAAT
ACCAGACAGTGGAAAACACGAGTCCGCTAACATTAGCTGGTGGACTTCAA
CCTGTTCTTGGGATTGACTTATGGGAGCACGCATACTGGATCAAACACCC
AAACCGAAGTCACTTGAACCATCTATTCTACTTTGCTACACTTCGAGCGA
ACCCAAAGAACGAAACAATGGAAATACCGAAGAAGTTACAAAGAGCTTTC
AAACGATCGTTTGTCAATATGACTTTATTTGAGACACAATTTAAAGAATC
CATGGATAAAGTATCGAGTGTTGGTTTTGTCTGGTTATGCCGTGTACCGA
AACGAGATTACCTAACAGTGACAAAGACAATCCGTTAACAAAGAAGTCGT
TATTGGACGTCATTCGAAACATTGGTCAAGTTCCTCATCAAATGAAATAT
GACCTGGAACAACAAATAGGAGGATGAAATTAAACCTTGTCTCACGTGTA
GTATTTTTACTTCTGCTTAACGTGGTCTTCACATATGGCATGCCACCGAT
GTATGAGGGAATTCAGCATTTTTCTGAACATTATAATCTGCCACCACTGC
CATTCAAATTTGGAAGCATGGAACCACAGTTTGATGCACCGACAATGAAA
ATTCATTACATTGAAGTTCATTCAAATTTCACTAAAAATATGAATAGGTT
ACTAAAAGATTGGCGAAAAGAGAGATGACTACTACAAAGCGTGGTGGTCA
ACTATTGATTGGAATAAAGTTGAACAACTCTACCAATGGTGGAAGAATAT
GGAACCACGTGATGAACTATAAATACCAGACAGTGGAAAACACGAGTCCG
CTAACATTAGCTGGTGGACTTCAACCTGTTCTTGGGATTGACTTATGGGA
GCACGCATACTGGATCAAACACCCAAACCGAAGTCACTTGAACCATCTAT
TCTACTTTGCTACACTTCGAGCGAACCCAAAGAACGAAACAATGGAAATA
CCGAAGAAGTTACAAAGAGCTTTCAAACGATCGTTTGTCAATATGACTTT
ATTTGAGACACAATTTAAAGAATCCATGGATAAAGTATCGAGTGTTGGTT
TTGTCTGGTTATGCCGTGTACCGAAACGAGATTACCTAACAGTGACAAAG
ACAATCCGTTAACAAAGAAGTCGTTATTGGACGTCATTCGAAACATTGGT
CAAGTTCCTCATCAAATGAAATATGACCTGGAACAACAAATAGGAGGATG
AAATTAAACCTTGTCTCACGTGTAGTATTTTTACTTCTGCTTAACGTGGT
CTTCACATATGGCATGCCACCGATGTATGAGGGAATTCAGCATTTTTCTG
AACATTATAATCTGCCACCACTGCCATTCAAATTTGGAAGCATGGAACCA
CAGTTTGATGCACCGACAATGAAAATTCATTACATTGAAGTTCATTCAAA
TTTCACTAAAAATATGAATAGGTTACTAAAAGATTGGCGAAAAGAGAGAT
GACTACTACAAAGCGTGGTGGTCAACTATTGATTGGAATAAAGTTGAACA
ACTCTACCAATGGTGGAAGAATATGGAACCACGTGATGAACTATAAATAC
CAGACAGTGGAAAACACGAGTCCGCTAACATTAGCTGGTGGACTTCAACC
TGTTCTTGGGATTGACTTATGGGAGCACGCATACTGGATCAAACACCCAA
ACCGAAGTCACTTGAACCATCTATTCTACTTTGCTACACTTCGAGCGAAC
CCAAAGAACGAAACAATGGAAATACCGAAGAAGTTACAAAGAGCTTTCAA
ACGATCGTTTGTCAATATGACTTTATTTGAGACACAATTTAAAGAATCCA
TGGATAAAGTATCGAGTGTTGGTTTTGTCTGGTTATGCCGTGTACCGAAA
CGAGATTACCTAACAGTGACAAAGACAATCCGTTAACAAAGAAGTCGTTA
TTGGACGTCATTCGAAACATTGGTCAAGTTCCTCATCAAATGAAATATGA
CCTGGAACAACAAATAGGAGGATGAAATTAAACCTTGTCTCACGTGTAGT
ATTTTTACTTCTGCTTAACGTGGTCTTCACATATGGCATGCCACCGATGT
ATGAGGGAATTCAGCATTTTTCTGAACATTATAATCTGCCACCACTGCCA
TTCAAATTTGGAAGCATGGAACCACAGTTTGATGCACCGACAATGAAAAT
TCATTACATTGAAGTTCATTCAAATTTCACTAAAAATATGAATAGGTTAC
TAAAAGATTGGCGAAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044489XLOC_044489Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071609-exon-scaffold_62-1575043694:184956..185222TCONS_00071609-exon-scaffold_62-1575043694:184956..185222Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1575043694:184371..184474TCONS_00071609-exon-scaffold_62-1575043694:184371..184474Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1575043694:183535..183744TCONS_00071609-exon-scaffold_62-1575043694:183535..183744Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1575043694:181179..181289TCONS_00071609-exon-scaffold_62-1575043694:181179..181289Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1575043694:180033..180517TCONS_00071609-exon-scaffold_62-1575043694:180033..180517Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1510915933:184956..185222TCONS_00071609-exon-scaffold_62-1510915933:184956..185222Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1510915933:184371..184474TCONS_00071609-exon-scaffold_62-1510915933:184371..184474Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1510915933:183535..183744TCONS_00071609-exon-scaffold_62-1510915933:183535..183744Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1510915933:181179..181289TCONS_00071609-exon-scaffold_62-1510915933:181179..181289Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1510915933:180033..180517TCONS_00071609-exon-scaffold_62-1510915933:180033..180517Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1491911889:184956..185222TCONS_00071609-exon-scaffold_62-1491911889:184956..185222Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1491911889:184371..184474TCONS_00071609-exon-scaffold_62-1491911889:184371..184474Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1491911889:183535..183744TCONS_00071609-exon-scaffold_62-1491911889:183535..183744Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1491911889:181179..181289TCONS_00071609-exon-scaffold_62-1491911889:181179..181289Clytia hemisphaericaexon
TCONS_00071609-exon-scaffold_62-1491911889:180033..180517TCONS_00071609-exon-scaffold_62-1491911889:180033..180517Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071609-proteinTCONS_00071609-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:180033..185222 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.109952	0.0357401	0.414976	0.40599	0.345977	0.507735	10.0837	9.6608	16.616	10.9794	17.4891	18.4044	18.5982	17.8462	31.0298	27.3589	18.6816	25.6342	31.8306	28.5792	19.7023	17.2671	7.14388	8.17583	6.61081	6.81309	1.65842	2.46715	21.3566	16.6612
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001189Mn/Fe_SOD
IPR019831Mn/Fe_SOD_N
IPR019832Mn/Fe_SOD_C
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0004784superoxide dismutase activity
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004784 superoxide dismutase activity
Blast
[Close]
BLAST of TCONS_00071609 vs. Swiss-Prot (Human)
Match: SODM (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.865e-28
Identity = 69/212 (32.55%), Postives = 107/212 (50.47%), Query Frame = 1 
Query:  121 EHYNLPPLPFKFGSMEPQFDAPTMKIHYIEVHSNFTKNMNRLLKDWRKEDKDNPLTKKSLLDVIRNIGQVPHQMKYDLEQQIGGHLNHLFYFATLRANPKNETMEIPK-KLQRAFKRSFVNMTLFETQFKESMDKVSSVGFVWLCRVPKRDYLTVYQTVENTSPLTLAGGLQPVLGIDLWEHAYWIKHPNRRDDYYKAWWSTIDWNKVEQLY 753
            + ++LP LP+ +G++EP  +A  M++H+ + H+ +  N+N       +E     L K    DV   I   P      L+   GGH+NH  ++  L  N   E    PK +L  A KR F +   F+ +   +   V   G+ WL    +R +L +     N  PL    GL P+LGID+WEHAY++++ N R DY KA W+ I+W  V + Y
Sbjct:   24 QKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNV-----TEEKYQEALAKG---DVTAQIALQP-----ALKFNGGGHINHSIFWTNLSPNGGGE----PKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQI-AACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
The following BLAST results are available for this feature:
BLAST of TCONS_00071609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SODM4.865e-2832.55Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
back to top