TCONS_00071609-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071609-protein
Unique NameTCONS_00071609-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071609-protein ID=TCONS_00071609-protein|Name=TCONS_00071609-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MKLNLVSRVVFLLLLNVVFTYGMPPMYEGIQHFSEHYNLPPLPFKFGSME
PQFDAPTMKIHYIEVHSNFTKNMNRLLKDWRKEDKDNPLTKKSLLDVIRN
IGQVPHQMKYDLEQQIGGHLNHLFYFATLRANPKNETMEIPKKLQRAFKR
SFVNMTLFETQFKESMDKVSSVGFVWLCRVPKRDYLTVYQTVENTSPLTL
AGGLQPVLGIDLWEHAYWIKHPNRRDDYYKAWWSTIDWNKVEQLYQWWKN
MEPRDEL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044489XLOC_044489Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071609TCONS_00071609Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001189Mn/Fe_SOD
IPR019831Mn/Fe_SOD_N
IPR019832Mn/Fe_SOD_C
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0004784superoxide dismutase activity
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004784 superoxide dismutase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001189Manganese/iron superoxide dismutasePRINTSPR01703MNSODISMTASEcoord: 40..51
score: 41.81
coord: 113..126
score: 33.53
coord: 209..221
score: 54.34
IPR001189Manganese/iron superoxide dismutasePIRSFPIRSF000349MnSOD_FeSODcoord: 19..253
e-value: 1.2E-43
score: 147.0
IPR019831Manganese/iron superoxide dismutase, N-terminalPFAMPF00081Sod_Fe_Ncoord: 37..129
e-value: 7.1E-13
score: 48.7
IPR019831Manganese/iron superoxide dismutase, N-terminalSUPERFAMILY46609Fe,Mn superoxide dismutase (SOD), N-terminal domaincoord: 32..129
NoneNo IPR availableGENE3D1.10.287.990coord: 54..130
e-value: 1.5E-14
score: 54.0
IPR019832Manganese/iron superoxide dismutase, C-terminalPFAMPF02777Sod_Fe_Ccoord: 142..243
e-value: 1.9E-23
score: 82.4
IPR019832Manganese/iron superoxide dismutase, C-terminalSUPERFAMILY54719Fe,Mn superoxide dismutase (SOD), C-terminal domaincoord: 139..250

Blast
[Close]
BLAST of TCONS_00071609-protein vs. Swiss-Prot (Human)
Match: SODM (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.098e-29
Identity = 70/216 (32.41%), Postives = 110/216 (50.93%), Query Frame = 0 
Query:   35 EHYNLPPLPFKFGSMEPQFDAPTMKIHYIEVHSNFTKNMNRLLKDWRKEDKDNPLTKKSLLDVIRNIGQVPHQMKYDLEQQIGGHLNHLFYFATLRANPKNETMEIPK-KLQRAFKRSFVNMTLFETQFKESMDKVSSVGFVWLCRVPKRDYLTVYQTVENTSPLTLAGGLQPVLGIDLWEHAYWIKHPNRRDDYYKAWWSTIDWNKVEQLYQWWK 249
            + ++LP LP+ +G++EP  +A  M++H+ + H+ +  N+N       +E     L K    DV   I   P  +K++     GGH+NH  ++  L  N   E    PK +L  A KR F +   F+ +   +   V   G+ WL    +R +L +     N  PL    GL P+LGID+WEHAY++++ N R DY KA W+ I+W  V + Y   K
Sbjct:   24 QKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNV-----TEEKYQEALAKG---DVTAQIALQP-ALKFN----GGGHINHSIFWTNLSPNGGGE----PKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQI-AACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACK 221
The following BLAST results are available for this feature:
BLAST of TCONS_00071609-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SODM1.098e-2932.41Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
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