TCONS_00071579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071579
Unique NameTCONS_00071579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4037

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071579 ID=TCONS_00071579|Name=TCONS_00071579|organism=Clytia hemisphaerica|type=transcript|length=4037bp
cataaatttgcattttgcctttttttttgttcagataCAAAAATGATAGT
GGGATTTTTAGGGACCAAGATCATGTATAAAAAGGGGACACTTTCAAATG
TTTtacatcaaatcaaatcaacaacCACAAGCGAACGACCAAGAcaagaa
aataaaatcatttttgagataTAAAATACCACAAGCAACAATAATACAAG
AGGACGCAGAATAATAATCAAAACCTCTTAAACGATGTTGAAATCAACAA
CTTTAACTTTTCTCCTATTGGTCCTTGCCATGACAACAGAAGCAACAAGA
TATCATCACATTGACCAAGATGGTATTTTGGACGATTTGGAAAGAGAAGC
ATATTCGGAAAACAGGTATCGACATCTCTTGAAAGAATTAAACGATGCAG
AACAATATAGTGATAGgtTAAGGAACAAATTTTACGACAATCAATTCTTC
AATGAGGACGAAGATGAAAATCGAAATGAAATCAAATCAGAGTTGGATCC
TGACGGTACACTTATTAACATGTACGAAACAATGGAAGATTCGAAGAATC
GAAAAACAAAAGGAGAAGAAAGTGAAGAAGATAATTCAGTTGATGATGCA
ATAAATGACTCAAGTTCtttagatgaaaatgaagaagatccTTCAAAATC
TGATGATGTCAACGATGTTGATTTGACAGAACAACAAGACGACACAGttt
tagtgaAAGGATTTGTCAAGAGGCTCAAAATTGGTAGATCATCACGAATT
TTGAAGACGATTCCCACGTGGCCGAAAGAATGGAAAGTCAGTTTCAATAT
CCAACCATATCATACGCAATTTAATAATTGGAGAAGTATCATCCATTTCA
CGACCGGTAGTAGTAGAGGACCAGTAGGGTCAAGAATCCCAGCCGTATGG
TTTCGGCCCTGGTCCCATAAATTGTATATTGTGTCATATGTCAATGACAA
AGAAAACACTTATACTTCATCAACTTTACCAACAAATCGATTCACCAGAG
TCCAGATTTCACAACGCAAGCAGAATAATGGCAAATATATCTACCAAATC
AAAATCAATGGAATAAAAGTTCGCTCAAAGGTGAATCGAATCCCAAGAGA
GTTTAACAATGTGCTGATTTATGCACCAGACAAATGGTCAAAAAGTAGTC
TTGCTTCTTTGAGGAACTTCAAATTTGAAGGATATTTGGAACCCAATTTA
CCAGCATCCAATATTGTCCAGAAAAACTCGTTCGCAAAATGTCAAGAGTC
AAGAAGAAGAACTGACTGCAGCAAAGCTAGCGATGAATTCCGTACCTTTG
ATGGCACCtgtaataataaaaagaaccctaAATGGGGAGCCACTGAAACT
CCACTCAGCCGAATTATTGACGCTGATTATGTGGACGGTATCACAACACC
TCGAGGATTCCCAAACACTTCACCAGTCGTTCCAACTGCAAATCAAGTCT
CAGAAGCTGTATTTCAAGTGGAAACTACTAACAATGGTAATGGGAATGGT
TTGGCTGTTTCTTTCATGACATTTGGACAGTTTTTAGATCATGATTTAAC
TGAAGTACAAATGAACAGATGTCAACTCAAAGTTTTTGGAAGATGCGACA
ACATCAAAGAATCCTTCGTTTATCCATGTCTTCCTATCCTTTTCAACGAC
TCGTCTTCAGAATGCACAACATTCAGCCAGTCTGAATCACTCTGCCCGGA
AAATGATAAACGTCCGGGAATACGTCAAATGCCAAACCATCTGAGTGCTT
TCATTGACGCCTCACAAATCTATGGAAATAGTGATACATCAGCTGAAAGA
TTGAGAGATCAAAATGATCGTGCATTGATGGCAATCACCGAAGATGGTTT
AATGCCAATCGTTCAAATCCCTGGATTTGCCGCATGTTCCGTGTTTAAAG
ATCTGTTAGGTGAGCGTACAACGGAATGCCGTACTTTGGGAGGATGTTCT
TTAGTCGGTGACGTCAGAGGAGACGAAAACATAGCTCTGCATTCCATGCA
CACTTTATGGATCCGCGAGCATAACAGAATCGCAAAACGACTCCGTAGAA
TGAATCCTAAGATGGACGATGAAGAAATCTATCAAACTGCTCGTAAGATC
GTTGGCGGTATTTGGGCTAACTTGGTTTATGAGGAATATTTACCAGCATT
GGTTCAAGTTTCACCATACCAAAAATATAAGGCCGATGTTGATCCGTCCA
TTAGTAATTCATTTGCTGCCGCAGCTTTCCGATACGGTCATAGCTTGGTA
CCCAACTCTTTCCAACAAAATAATGCAAGCTTTAATCCTGTTAGTGAACC
AATCTCCCTACAAAATGCATTCTTCAACCGCGAGCCTGTGAACTTTCGTG
GTATCGAACCAACGTTGTTTGGTATCACTGGCAACCAGTCTAATGAAGTC
GATAATAATTTCGCTAAAGGAATCGCGCGACGATTATTTGTCCGCCCTGG
TGAAGGTTTCCATTATGACTTACTAGCCTTGAATGTACAACGTGGCAGAG
ATCACGGGCTACCAACGTACGGAGCTTACAGAAAATTCTGTGGTCTACCA
ACATTGAACTCTTGGGCTGATGCTCGATCATGTTTCTTACCCAAAGCTGT
TCAAGCTTTCAAGAAGATTTATAAAAGTCCAAATGATATTGATCTGTTTG
CTGCTGGAATTTCCGAAATTCATCTTTCCAATTCAGAACTCGGACCAACA
TTTAATTGCTTGATCAAAAAGCAATTTGAAGATGTCCGAGACGGTGATCG
ATTCTTTTACCGAAACAAAAACGTTTTCACTCGAAATCAACTAAAAGCTA
TCGAGAAGGTTACTTTTGCAAGTGTTCTGTGTGCGAATCTAAAGAATATT
GTATGCATCCAACCCAATGCACTGAGAGTTCCAAACGATGGCTCTAACCG
TAGAATCACCTGCGATAGAATTCCAAAACTTAACTTAGGTCCTTGGAGAC
AGTAAATTATCTTTTTGTCTCGATAATTTGTGTAGACTATGATATGGGTT
TCTCTTATAAATTTTGTTCTGAATTAATTTAGCTATATAAAGTATTTGTA
ATGTttcattttgatcaaattttaattATGTAAACTTACtttagttttaa
aatttcttctatTTATAATTGTGGTCCCAGAGGCCGTTGTCGCACCAAAG
ATTTGTCACTATTTCATTAGTTTGATCGAAGACAGCAGACGAAACTTATG
TGTTAAAAAAGGATAGGTTAAACAGAAAATCTGGCAGTGATATTTTTCAC
CACAAAGAATTTGTTTACAGagagcttcaaaataaaataaaagtaggATT
CTCTAGCGatcgtggctagccatcgtgTGTAAACATTTGAGTGTGACTTT
Actaaaagactttgaaagactttgaaagactttgaaagactttgaaagac
tttgaaagactttgaaagactttgaaagactttgaaagactttgaaagac
tctgaaagactttgaacagctttggataggttttgaaagcacccagagcc
tcttgggaactcgTTTNTCTCTTAAAGCTACCTACAACATCCAGAGGACT
AAATTACTGTGTTCAACTATAACTTAAACGACGTGCGATGCCGGGAAGCG
GCTAGTTGTTTTATATTTCTAGTTTAATTTACAATCATTAAATAACtcaa
tcaataaaaaaatgaaaactctcaaagtctgtaaatttttgaaaaaattc
cctttATTAAAGACGAAGAAGCTGTtctcatagatttataaatcccgaag
ggctatatgtcgtgctttaagctctacttccaagcaaaaaaagtgaatat
cgcaaagaATATAGCtcctattgttttcgaaaacccacgaagcttctgat
tggtcaagttctagaattatattgtaatgtcacgtgacttaggtagtaTT
Tcccacccctgtgtcacagacccactgggaccccagccccactggaaatc
TCAGCAATAATTtcgtcccggtgggaaaataccctggaatttcagcccta
cTGGGGAAATGACTTTAATTTTACTCCCCCATTCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_62:257127..268521+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071579 ID=TCONS_00071579|Name=TCONS_00071579|organism=Clytia hemisphaerica|type=transcript|length=11395bp|location=Sequence derived from alignment at scaffold_62:257127..268521+ (Clytia hemisphaerica)
cataaatttgcattttgcctttttttttgttcagataCAAAAATGATAGT GGGATTTTTAGGGACCAAGATCATGTATAAAAAGGGGACACTTTCAAATG TTTtacatcaaatcaaatcaacaacCACAAGCGAACGACCAAGAcaagaa aataaaatcatttttgagataTAAAATACCACAAGCAACAATAATACAAG GTAAGAGTTTTCTTTCCTCTCTAAAGCAGTAGAGTGGTGTCTCGATCGAA ACTGGGGAggcattttaagtttttggtattttttctctTGTTGGCTAAGC AGACTGTTCATGCTGAGGTGCAAAAAAGCAAGGGTGGGGTGAAATTTGTA TTCAGAGGTGCCTTTTTCACCCCTTGTCTTTCACCGCCCAAAAGAAATTC AGCCTCTTGGGGGGAAGGGGGGGTGGGCAGTTGCCCCCTCTGACCACCAC GATTCTTTCAAATGGTAGCAGCTATTTCTCCCTTGTCATGGGCTTCGTCA ACGGAGGGGGTCCGGGGGCATGGTCCTCCACTTTTTTACAGACCATGCCA TACTTTAAGCCAtgaaaactattattctccccaattagataacgttttaa ggtgttttgagggtgtaaaaagtggcaaattttcttcgtcgatcaaccat ggtgggcgccatttgtttccaaaatatttcCCCACCCCCTCCttcactca aaatggctcgccggggcccatgcTTGCGTTTGCTTTAACCTTTAAAACCG TGGGTCAGGTCATATAATCTTAGTCACATTAAGGTCACACTGTTTTTGTG TCACCACATTCTTTTTAAGATTTCAGCTAAAATTTGGAAATTCTACTAgt cccaaattttcaaatttattttcaccTTTCATAAAGTGGAGTACATTTTT ATGAACCTAAATATTGTTATTTACTTTGAGAGATGTTTAAGTTCAAAATC AAGGCTTTTAAGAAATATGTATGGCTTCTAGTCGCATCAGCTTAGCATTC CAAAGAGTGATTTGTGATAGATTATTCATGAAAAGTGTAAAAGAACTCAA TACACAAGTTTTATCTTTAAATCTCATATCCGATCTTTTGAATATGGTCA GAGTCCTTTTTAAAGCAAATGGACTGTAATgttctttctgtttattttag AGGACGCAGAATAATAATCAAAACCTCTTAAACGATGTTGAAATCAACAA CTTTAACTTTTCTCCTATTGGTCCTTGCCATGACAACAGGTAGGAATCTA ACTTGTTACCATAGTAACCGTGCAAATAATTATCAAATCCAATTAAGACA ATATGACGATATAGGATATCTCATTAATACGTTTAATTAGCTACTAGGAG AGTGGAGCTTTAAACGTACCTTTGCTCGTCTAAAATTGTTTGTACATCAC TCAAAAGGGTGGGGAGTTTCCTGTAGAATCTCCTATTTACAGAtaaagct gttttttttttaatgttacCCGCCACAAAATCCTTGTGAATAGGGttaaa ttttttcactaaaatattagTTGACTAGCTGAACGACTACGAGACATGCA CATAATATAAAGTTATGTAAACGAAAACATCATCCCCTGTCTCAGCAAGA TCCagatcattgagtttcaagcccgaagggctagaggtcaatctctaacc tttctcaggcaagaaaaattgaagccctaaaatatgcgccgtatttttga tgacggattgaatctagcaattcctttgtcttcgagtgatatatttttcg aaattaagcggtaaattttagtttcaatNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN tttcaatctgtcatttgtgtaaaaaccaggcgggtcgctcaaggccgcgc aactttggtaggatttgttggcttcaaatcctaccaaagagattgacctc taagccttcggcttgaaactcaactGTTCAGTAGTATTTATATGATGTTG TGTTTAGCCTATatgaacaaacaaacaaacatcaTATAAATGGACCCTAA ACAACCCAATTGGCACACACACAATTGGTTATTCAACGttcacaaacaac aacaacaataacgttgtgtgcctgctGGGAAACTTACGAGACAAGATTTT CGAAAGATAAAATCAGACTCCCTAAAATCTACCAATAATCAATCTCATTC TTCTTTAGAAGCAACAAGATATCATCACATTGACCAAGATGGTATTTTGG ACGATTTGGAAAGAGAAGCATATTCGGAAAACAGGTATCGACATCTCTTG AAAGAATTAAACGATGCAGAACAATATAGTGATAGGTGAGTTTAATGACG TCTTTCTAACGTTCAATGGACgttttggacaatatttgaatATTGGTTGA ATGATGTGTCGCACCAATAGGAACCCCTCTTGTTTTACTTTGACAATAGA CTTTAAAATTATCTTGGGGACGGGAAGAAAATATGGAAATTACTTAAATA GCAAACATGTAAAAAGTTTCAATTCTTGAAATGTTATgatgagagaaatt tcaaatgaaaaatttacaGAAGAAAGATAGAATTTTAATTCTTCACTAGT TCAAGTAAAAAAACACACGTTACCTTAATTGcctactcaaagtttcatgc cacATACAGAATGGCAATCTTCAATGAAATACACAAACtctataaaaatt taattttgaaaatctttttaggtTAAGGAACAAATTTTACGACAATCAAT TCTTCAATGAGGACGAAGATGAAAATCGAAATGAAATCAAATCAGAGTTG GATCCTGACGGTACACTTATTAACATGTACGAAACAATGGAAGATTCGAA GAATCGAAAAACAAAAGGAGAAGAAAGTGAAGAAGATAATTCAGTTGATG ATGCAATAAATGACTCAAGTTCtttagatgaaaatgaagaagatccTTCA AAATCTGATGATGTCAACGATGTTGATTTGACAGAACAACAAGACGACAC AGGTAAACATCTAGAATCAAGATCATACGAGATGAGGCAATCTGTTTCTT TCCAAAATGGCAaaccaatgttgtttcaacattcatctaacaCTATATGA ACGTttttaacgttagatggacgtcgAAACGAAATTGCTTGACTATAAAC TCAATCCTGGTACAAAAAAGTACCaagaaaaagaaatccaaatCTCAGTA GTTGCAGgaaatatcaataaattttgcGTTTAGGAAAATAGCGACAGGCT TCCAATCTCCTCTTGTATATTGTGTATGAGGCTTTTAATAACTTCAAGAG ACTGTCTAAACGTCGAAAAAAGCCCAGAATAGCTATAAGCACAGTTAACA TATGCGAAGACTGGGGCCGAATGTAATTTCGCATAGCTTAAAAAACTAGC TTAGATTCGGTGTATCAAAACTTTCACTCAGATCCACTCttggaatttat ttattacCATCCAATTGTTTCATCGTCTTCTCCCGGGTGTTTAATAAGAA TCCCCACccaataataaatttttcgaacattttccattcaggacattctt attccaactccccgcttattaatttttgggaaaatgtttatAAAAGCTCC CTCTTTCGCCCTAATTCTGCTAtattagcctccttttaaaaagttttcta gcCAGGAAATTTTTATTCCATCCCCCACtaaattttgagaatctttcCTC CAAATCCCTCcttttattaggcacctgagagtatcTAATGTTTACATCGT CCGCCAGTTTTAATAATGTCAGTTGAATGTTGAAataatgttgtgtgcca gctgggaggcTACTTCGATATATcaacaaacattttttttagttttagtg aAAGGATTTGTCAAGAGGCTCAAAATTGGTAGATCATCACGAATTTTGAA GACGATTCCCACGTGGCCGAAAGAATGGAAAGTCAGTTTCAATATCCAAC CATATCATACGCAATTTAATAATTGGAGAAGTATCATCCATTTCACGACC GGTAGTAGTAGAGGACCAGTAGGGTCAAGAATCCCAGCCGTATGGTTTCG GCCCTGGTCCCATAAATTGTATATTGTGTCATATGTCAATGACAAAGAAA ACACTTATACTTCATCAACTTTACCAACAAATCGATTCACCAGAGTCCAG ATTTCACAACGCAAGCAGAATAATGGCAAATATATCTACCAAATCAAAAT CAATGGAATAAAAGTTCGCTCAAAGGTGAATCGAATCCCAAGAGAGTTTA ACAATGTGCTGATTTATGCACCAGACAAATGGTCAAAAAGTAGTCTTGCT TCTTTGAGGAACTTCAAATTTGAAGGATATTTGGAACCCAATTTACCAGC ATCCAATATTGTCCAGAGTGAGTATCAAAAAATCTTACGTACAATGTGTC CCACCCTCCCCCCTCCCCCGAAAAAatggacaaatttttatatgatgtaa aattctcaaaagtCATTATTTTAATTGGGCTTAAAATGATCGAAATAAGA TTACaattctctgttcaatcaatagatattccATTCCCAAGATGTTTGAA TAGGTTTATGAGATTGAAATATTAAGTATACAAGTTGCATAACATTTCAC CTAAATCATGGggattttatataaaaatgtgtCCACTTTTTTTGGGACAG ATGCACTAGTTGGACCTTGATTTGTACAATATTGACATGTAAAAGTCTAT TCTATGCAACTACTGAGAAAGAAAGTGAAGCATTTTGTTGGTGTTTAGTC CTTGTGGGTTTCTTTCTCAAAAGTCttgaagtattttttcaagtaataca ccttttcgatcgtagtcgtgcggtcaggcgcgtgccactttcatcccact aaactcgatctaatccttttttgacacatttttcttttgtatataggtcc aaaaaaaggactgggacagttttagtgggataaagcagaCAAAAAATGTC CGCGCGGCGATTGGCAGCTACGgtcaaaaaaagtgtattaataATGAACA TAAAATTTACCAATTTTCTAGAAAACTCGTTCGCAAAATGTCAAGAGTCA AGAAGAAGAACTGACTGCAGCAAAGCTAGCGATGAATTCCGTACCTTTGA TGGCACCtgtaataataaaaagaaccctaAATGGGGAGCCACTGAAACTC CACTCAGCCGAATTATTGGTAAGGGCGTCCACACGTCTTTTTTATGATAA AAACTAAACTTTTGAAGCAttctgatgttcttaactgttttaagttttaa gaatggaaatattttctaatcattctaattttcaccatttttgcgAGTAT TTTCTGCAATGTTCTAAGAATTTAGGTGTTTTAAAGTTaataaagtctta aaatgttctaaacttgttgtcgatattttggccattgaaacCTCAtcttc ttttatataaaaacgtgTAGGTTCATATATAGAATGACAAGAAAGACGCT CCGATTTTGGCCTTCGGTCTAAAAAGGGGTTTGAAGGGGTTAAAAGTTCT GATAGCTAAATGGGCTTATTTTCCTAGAATTTAGTCTAATTTTTGTATAT TTGTCAACAAAATAGACTATGAAAATAAACTTGATCTGGAAGGTGTCTGT TAGTTACAAGGGCGTAAGAAAGTGATTGAATAATATTATGTTCCAGACGC TGATTATGTGGACGGTATCACAACACCTCGAGGATTCCCAAACACTTCAC CAGTCGTTCCAACTGCAAATCAAGTCTCAGAAGCTGTATTTCAAGTGGAA ACTACTAACAATGGTAATGGGAATGGTTTGGCTGTTTCTTTCATGACATT TGGACAGTTTTTAGATCATGATTTAACTGAAGTACAAATGAACAGATGTC AACTCAAAGTTTTTGGAAGGTAAGATATGTTTCTGTTTGTCTCAGGGACG AAAGTGAGAGACgcaaaaatgttatcaaaagcGCTGTCGACTTCACTTTT AttgatagaaagaaaaaatcGAGTGGAGACACgggaaagcgtttcaggtt ggtgggatgcaccaacgcgaaaaaaaacttctcgtttCCTCAAACCTTTA CATTCTTGTGTTACACGTTTACTTTTTAAGAAGAATATCCAggtgttctt aaattttttagtttcaggcctaaaaatgttctttacgtgttcttattttc accaccaCGTATTTCTGTCCATCTTCTTAGGCAATCAAGGTGTTTTAGAT TCCGCAatgcttttaaatgtttttaactagttcttaaatattttggccat cgaagccatatgttcttatatatactTTCTTcgttaaaaaacgtgtattt ttctgtgatttcttTATGTGATGTTACCCcactgacacacaacgttgttt caacgttcatctaatgttcataacgtccatataacgttagatgaacgctg aaacaacgttgtgtgccagctgggtgtcTATGATTTTTCTAGCCTTACAG GGTTTTGGAATTGGGCCGATACTTCTTNGGTGTCTATCAGAGGCACCaag taaattttttgaaatttctcctggatttttttgattttaaaaacaacACA AGGACAAAAATATTTGCAAACTCTATTGATAAAATCAGTATACTAATAAT ATAAAAAGTCATCATCCAAAAATACTACCGCATTATCGATCAAACCatct aaattcaatttttggcgtctattttttatcttagaaaatatatttattCT TTTTACTCTAGAATTCCAGTGGTTGACATATTTACtgattttaattaaat ttcatGACCAAGgctcttttttatcaaaagaaaaaaatgttatcCTTTGC TCAATATTTCGTAACtgcagaaagaaaagaaaaaaccaaaaaaagaatag taaattctaaaatagaTAATTTTACATCTGATAATCTTGCCGTAAAACAT GTCAAAGAAACAGTCGCATTCCATcctattttggtttaaattaaaTAAAG TTAAGATTTAACCAATCAAACTCCAACAAGCCTCGTTTTCTCCacttaat acacccctgtctcacagccccggtggaacttttttcctcagtggggataa aaattcctatcgaaattcaagttgggataaaaattttattgttccaaggt taaaaaatccaatagggatggttttagagtgcaGTTTTTAAACGTTGatt ttcgaatggggatgaaattaaagTCGATCTctcagtggggctaaaattcc cGGTTGTTGGGGACAAaatatttgccaaattttctagtGGCGCTAGGGTC CCAgtaggtctgtgacacaggggtgtcttgttttttcgacgtttatctaa cgttcacaacgtccatataacgttagatgaaagttgaaataacgttgtgt gccagctgggaagaaGCAGAGATCTAGGATGCAGAGTTTCAAGTTTTTGA GGCAGTGAGATTCATATTTTAGAAGCAGAGTTTTAGATCTGGGAATGTGA GAAGCCAAATCTCAAAAGCTGAGATGCAGGGGTGAAACTCTAAAAAGTCA TTTGGCTGTAAAGGTACATTGATCGTGTACGATGGAATCAGTCACACCTC ACCAAGCTTTGTACTCTGGATAcagatttttcatttaaaaaacataaaat cagGCTTTATTCATTTTAACTAAACTTGTAAGATTTTTTCATCTTCCAGA TGCGACAACATCAAAGAATCCTTCGTTTATCCATGTCTTCCTATCCTTTT CAACGACTCGTCTTCAGAATGCACAACATTCAGCCAGTCTGAATCACTCT GCCCGGAAAATGATAAACGTCCGGGAATACGTCAAATGCCAAACCATCTG AGTGCTTTCATTGACGCCTCACAAATCTATGGAAATAGTGATACATCAGC TGAAAGATTGAGAGATCAAAATGGTAAGTACACACTCGGGAAATAAGAGA TTNCATCAGCTGAATTATTGAGGGATCAGAATGGTAAGTACACACTCggg aaataagagatttccaatcctggaaatatcttgaaaataggaaaatatga cttttctgtatttccaaagttgtggaaataccatatttcatgatatttcc aaatctgaaaTGTGATGTTTCGATTAATTTCAGAATtagaaatatcatga aatatgtaaaactttggaaatatagaaaagtcatatttccatatttacaa aagtatatggaaacatcatattttcaagatatttccatgATTGAAAATCT CATATTTCGCACAGTGAAAATCAGGgttaaaatatttgagacagaGGGGA TTTCCCTGTGAAATTTTAGACACCACAAATGTTTTTGAAGCGCGTTAAAC TAAAGTTGGAAAGTCGAGTTTTTACTccgagttttaacatgagattTAAG ACTAAGGTTCTTAGGATtacaggatttaaaagctcaaaattatttcaata tAATAAGTATAGCCTAAAAGTCACCTAAGCCCTCCAAATCGATATATTCA ATGACATAAAGTAGAAATACTAAAATAACAATTCGCACGAGCTCTAAGTT CTTAATttaacgttaaaatacactgaAATCTCATTATATTTCGACCAAGA ATTTTTAGATATGCAAGGCAGAACCTTTCGAATCCAAAACAATTGTACAA TGGAGTCTTCATAATGTCTCATTAATTTGAATAAGTATTCTTgtcctttc agttaacaatgccttacttcataactcgaaGGTTTCCTGAAGCCAAAAAA AATGTGTTCCCCGTGCGCGTTCAAGTTGCTTATCGATTTGATCGGGCAGG ATCAACTTTTcgaactccagcggcacgtctcCGTCGGCCTCAAGgtcagc cccccccccgggtgacAGATCCTTACGGAAAAAACTGTTAATGATCTTCC TTTAGCCTGTATTCGGGGAGATTTAATTCCCTTTTTTCTGCCCGCAAAAA CAAGCACTACTAGACAACACTGGGTCAAGTAAAAGGACAAGAAAAGTAAC TGAATGAAATATTGAATGGTCAGAGTTATAGAGTGGTAACACACTCTATA ACTAAAATAGATGGGGTACAAAGCCGGCTGTCTGAACTAGAAGTTAGTTG GCAATGTAGGacataacaaaaaaaaacttttcatgaaaataattctttat tgTCCTTTATCTTTATTACTTCAGATCGTGCATTGATGGCAATCACCGAA GATGGTTTAATGCCAATCGTTCAAATCCCTGGATTTGCCGCATGTTCCGT GTTTAAAGATCTGTTAGGTGAGCGTACAACGGAATGCCGTACTTTGGGAG GATGTTCTTTAGTCGGTGACGTCAGAGGAGACGAAAACATAGCTCTGCAT TCCATGCACACTTTATGGATCCGCGAGCATAACAGAATCGCAAAACGACT CCGTAGAATGAATCCTAAGATGGACGATGAAGAAATCTATCAAACTGCTC GTAAGATCGTTGGCGGTATTTGGGCTAACTTGGTTTATGAGGAATATTTA CCAGCATTGGTTCAAGTTTCACCATACCAAAAATATAAGGCCGATGTTGA TCCGTCCATTAGTAATTCATTTGCTGCCGCAGCTTTCCGATACGGTCATA GCTTGGTACCCAACTCTTTCCAACAAAATAATGCAAGCTTTAATCCTGTT AGTGAACCAATCTCCCTACAAAATGCATTCTTCAACCGCGAGCCTGTGAA CTTTCGTGGTATCGAACCAACGTTGTTTGGTATCACTGGCAACCAGTCTA ATGAAGTCGATAATAATTTCGCTAAAGGAATCGCGCGACGATTATTTGTC CGCCCTGGTGAAGGTTTCCATTATGACTTACTAGCCTTGAATGTACAACG TGGCAGAGATCACGGGCTACCAACGTACGGAGCTTACAGAAAATTCTGTG GTCTACCAACATTGAACTCTTGGGCTGATGCTCGATCATGTTTCTTACCC AAAGCTGTTCAAGCTTTCAAGAAGATTTATAAAAGTCCAAATGATATTGA TCTGTTTGCTGCTGGAATTTCCGAAATTCATCTTTCCAATTCAGAACTCG GACCAACATTTAATTGCTTGATCAAAAAGCAATTTGAAGATGTCCGAGAC GGTGATCGATTCTTTTACCGAAACAAAAACGTTTTCACTCGAAATCAACT AAAAGCTATCGAGAAGGTTACTTTTGCAAGTGTTCTGTGTGCGAATCTAA AGAATATTGTATGCATCCAACCCAATGCACTGAGAGTTCCAAACGATGGC TCTAACCGTAGAATCACCTGCGATAGAATTCCAAAACTTAACTTAGGTCC TTGGAGACAGTAAATTATCTTTTTGTCTCGATAATTTGTGTAGACTATGA TATGGGTTTCTCTTATAAATTTTGTTCTGAATTAATTTAGCTATATAAAG TATTTGTAATGTttcattttgatcaaattttaattATGTAAACTTACttt agttttaaaatttcttctatTTATAATTGTGGTCCCAGAGGCCGTTGTCG CACCAAAGATTTGTCACTATTTCATTAGTTTGATCGAAGACAGCAGACGA AACTTATGTGTTAAAAAAGGATAGGTTAAACAGAAAATCTGGCAGTGATA TTTTTCACCACAAAGAATTTGTTTACAGagagcttcaaaataaaataaaa gtaggATTCTCTAGCGatcgtggctagccatcgtgTGTAAACATTTGAGT GTGACTTTActaaaagactttgaaagactttgaaagactttgaaagactt tgaaagactttgaaagactttgaaagactttgaaagactttgaaagactt tgaaagactctgaaagactttgaacagctttggataggttttgaaagcac ccagagcctcttgggaactcgTTTNTCTCTTAAAGCTACCTACAACATCC AGAGGACTAAATTACTGTGTTCAACTATAACTTAAACGACGTGCGATGCC GGGAAGCGGCTAGTTGTTTTATATTTCTAGTTTAATTTACAATCATTAAA TAACtcaatcaataaaaaaatgaaaactctcaaagtctgtaaatttttga aaaaattccctttATTAAAGACGAAGAAGCTGTtctcatagatttataaa tcccgaagggctatatgtcgtgctttaagctctacttccaagcaaaaaaa gtgaatatcgcaaagaATATAGCtcctattgttttcgaaaacccacgaag cttctgattggtcaagttctagaattatattgtaatgtcacgtgacttag gtagtaTTTcccacccctgtgtcacagacccactgggaccccagccccac tggaaatcTCAGCAATAATTtcgtcccggtgggaaaataccctggaattt cagccctacTGGGGAAATGACTTTAATTTTACTCCCCCATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044475XLOC_044475Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071579-exon-scaffold_62-1491911889:257127..257326TCONS_00071579-exon-scaffold_62-1491911889:257127..257326Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1510915933:257127..257326TCONS_00071579-exon-scaffold_62-1510915933:257127..257326Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1575043694:257127..257326TCONS_00071579-exon-scaffold_62-1575043694:257127..257326Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1491911889:258277..258365TCONS_00071579-exon-scaffold_62-1491911889:258277..258365Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1510915933:258277..258365TCONS_00071579-exon-scaffold_62-1510915933:258277..258365Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1575043694:258277..258365TCONS_00071579-exon-scaffold_62-1575043694:258277..258365Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1491911889:259385..259511TCONS_00071579-exon-scaffold_62-1491911889:259385..259511Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1510915933:259385..259511TCONS_00071579-exon-scaffold_62-1510915933:259385..259511Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1575043694:259385..259511TCONS_00071579-exon-scaffold_62-1575043694:259385..259511Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1491911889:259898..260178TCONS_00071579-exon-scaffold_62-1491911889:259898..260178Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1510915933:259898..260178TCONS_00071579-exon-scaffold_62-1510915933:259898..260178Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1575043694:259898..260178TCONS_00071579-exon-scaffold_62-1575043694:259898..260178Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1491911889:261019..261543TCONS_00071579-exon-scaffold_62-1491911889:261019..261543Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1510915933:261019..261543TCONS_00071579-exon-scaffold_62-1510915933:261019..261543Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1575043694:261019..261543TCONS_00071579-exon-scaffold_62-1575043694:261019..261543Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1491911889:262198..262344TCONS_00071579-exon-scaffold_62-1491911889:262198..262344Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1510915933:262198..262344TCONS_00071579-exon-scaffold_62-1510915933:262198..262344Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1575043694:262198..262344TCONS_00071579-exon-scaffold_62-1575043694:262198..262344Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1491911889:262823..263045TCONS_00071579-exon-scaffold_62-1491911889:262823..263045Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1510915933:262823..263045TCONS_00071579-exon-scaffold_62-1510915933:262823..263045Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1575043694:262823..263045TCONS_00071579-exon-scaffold_62-1575043694:262823..263045Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1491911889:264826..265049TCONS_00071579-exon-scaffold_62-1491911889:264826..265049Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1510915933:264826..265049TCONS_00071579-exon-scaffold_62-1510915933:264826..265049Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1575043694:264826..265049TCONS_00071579-exon-scaffold_62-1575043694:264826..265049Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1491911889:266301..268521TCONS_00071579-exon-scaffold_62-1491911889:266301..268521Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1510915933:266301..268521TCONS_00071579-exon-scaffold_62-1510915933:266301..268521Clytia hemisphaericaexon
TCONS_00071579-exon-scaffold_62-1575043694:266301..268521TCONS_00071579-exon-scaffold_62-1575043694:266301..268521Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:257127..268521 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0.0615297 0 0.0533596 0 0.0391192 1.40143 0 8.31145 1.70346 3.8201 5.89941 5.66771 18.1969 4.05296 7.08787 29.8931 39.2203 29.7669 22.7068 933.284 775.569 18.8177 10.4056
Blast
BLAST of TCONS_00071579 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 1.620e-85
Identity = 203/608 (33.39%), Postives = 307/608 (50.49%), Query Frame = 1
Query: 1231 FAKCQESRRRTDCSKAS--DEFRTFDGTCNNKKNPKWGATETPLSRIIDADYVDGITTPRGF-PN---TSPVVPTANQVSEAVFQVETTNNGNGNGLAVSFMTFGQFLDHDL--TEVQMNRCQLKVFGRCDNIKESFVYPCLPILF--NDS----SSECTTFSQSESLCPE-------NDKRPGIRQMPNHLSAFIDASQIYGNSDTSAERLRD-QNDRALM--AITEDGLMPIVQIPGFAACSVFKDLLGERTTECRTLGGCSLVGDVRGDENIALHSMHTLWIREHNRIAKRLRRMNPKMDDEEIYQTARKIVGGIWANLVYEEYLPALV------QVSPYQKYKADVDPSISNSFAAAAFRYGHSLVPNSFQQNNASFNPVSEP-ISLQNAFFNR-EPVNFRGIEPTLFGITG--NQSNEVDNNFAKGIARRLFVRPGEGFHYDLLALNVQRGRDHGLPTYGAYRKFCGLPTLNSWADARSCFL-PKAVQAFKKIYKSPNDIDLFAAGISEIHLSNSELGPTFNCLIKKQFEDVRDGDRFFYRNKNVFTRNQLKAIEKVTFASVLCANLKNIVCIQPNALRVPNDGSNRRITCDRIPKLNLGPWR 2949
             + C   RR  +CS      ++RT DGTCNN ++P WGA+ T   R++ + Y +G  TPRG  P+       +P    VS  +   ET             M +GQFLDHDL  T V +++ +      C N+  S   PC  ++   NDS     + C  F +S  +C         N   P  R+  N L+++IDAS +YG+++  A  +RD  + R L+   I +    P++           +D       E  +   C L GD R +E + L SMHTLW REHNRIA  L ++NP  D + IY   RKIVG    ++ Y+ +LP ++       +  Y  Y   ++  I N+FA AAFR+GH+LV     + + +F P+++  + L  AFF+    VN  GI+P L G+ G   +           +  RLF         DL A+N+QRGRDHG+P Y  YR +C L   +++ D ++    P+  +  K++Y S  +IDLF A + E  +  S LGPT  CL+  QF+ +RDGDR +Y N  VF+  QL  I++ + A +LC N  NI  +Q +  RV  +  +   +CD IP+++L  W+
Sbjct:  720 LSGCTAHRRVNNCSDMCFHQKYRTHDGTCNNLQHPMWGASLTAFERLLKSVYENGFNTPRGINPHRLYNGHALPMPRLVSTTLIGTETVTPDEQ--FTHMLMQWGQFLDHDLDSTVVALSQARFSDGQHCSNVC-SNDPPCFSVMIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYP--REQINQLTSYIDASNVYGSTEHEARSIRDLASHRGLLRQGIVQRSGKPLLPFATGPPTECMRD-------ENESPIPCFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPHWDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRVPSQLLNTELTERLFSM-AHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNEIKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVFRVA-EFPHGYGSCDEIPRVDLRVWQ 1313          
The following BLAST results are available for this feature:
BLAST of TCONS_00071579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PXDN1.620e-8533.39Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 S... [more]
back to top