TCONS_00071553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071553
Unique NameTCONS_00071553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071553 ID=TCONS_00071553|Name=TCONS_00071553|organism=Clytia hemisphaerica|type=transcript|length=634bp
TTGTTGACAAGTTTTGTTTGCATGTTTCTTcatgaaaacatattttattC
CATCACTGATGATAGTAACTTGTCTCTTGTTTGTCAAAAGTGAACTGATT
CCTATGTACCAAGCTTCGTAAGACTCGTAAGCACTTTCCTCCCATCTCAT
CTCTCTGAATCCGAAGAAAACATCAGCTCCCCAAGcaaacttttcttctt
tcgtGAAAACATGaggatatttttcttttatgacTGCCATTTTAGATTCC
GGTTGGTTGTTGTTCTTTTTGGAGCTTTCTAAATCTTTGATTTGAAGttt
gaaatcattttctttttccagcATTTCCTTGTCGTTTTTCATTAGTTTCA
TTTTACATTCGTTTTCCCATTGGTTTTCTTTGAGTGCCATCTGGTTTTTC
GTGTCTAATATCTCCTTGTCCTTTATAGCAagttgtttttccatttcagt
cAGTTTATTTTGAAGATCTTTGTCAGCGGCAACTTGTTTCGTTTCAGCTT
CATGTGAATTCTTCAACTTCAACATCTCCAATTGATGACCTAACGTTTGA
TTGTCTTTTTCCAAACTGACATTTTTCATTTGAGCTTCCATCAATTCAAT
CTTTGACtcataattcaatttttgaatttctctt
Run BLAST on NCBI

protein sequence of TCONS_00071553-protein

>TCONS_00071553-protein ID=TCONS_00071553-protein|Name=TCONS_00071553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
REIQKLNYESKIELMEAQMKNVSLEKDNQTLGHQLEMLKLKNSHEAETKQ
VAADKDLQNKLTEMEKQLAIKDKEILDTKNQMALKENQWENECKMKLMKN
DKEMLEKENDFKLQIKDLESSKKNNNQPESKMAVIKEKYPHVFTKEEKFA
WGADVFFGFREMRWEESAYESYEAWYIGISSLLTNKRQVTIISDGIKYVF
MKKHANKTCQQ
Run BLAST on NCBI

transcript from alignment at scaffold_60:1685593..1686226

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071553 ID=TCONS_00071553|Name=TCONS_00071553|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at scaffold_60:1685593..1686226 (Clytia hemisphaerica)
aagagaaattcaaaaattgaattatgaGTCAAAGATTGAATTGATGGAAG
CTCAAATGAAAAATGTCAGTTTGGAAAAAGACAATCAAACGTTAGGTCAT
CAATTGGAGATGTTGAAGTTGAAGAATTCACATGAAGCTGAAACGAAACA
AGTTGCCGCTGACAAAGATCTTCAAAATAAACTgactgaaatggaaaaac
aactTGCTATAAAGGACAAGGAGATATTAGACACGAAAAACCAGATGGCA
CTCAAAGAAAACCAATGGGAAAACGAATGTAAAATGAAACTAATGAAAAA
CGACAAGGAAATgctggaaaaagaaaatgatttcaaaCTTCAAATCAAAG
ATTTAGAAAGCTCCAAAAAGAACAACAACCAACCGGAATCTAAAATGGCA
gtcataaaagaaaaatatcctCATGTTTTCacgaaagaagaaaagtttgC
TTGGGGAGCTGATGTTTTCTTCGGATTCAGAGAGATGAGATGGGAGGAAA
GTGCTTACGAGTCTTACGAAGCTTGGTACATAGGAATCAGTTCACTTTTG
ACAAACAAGAGACAAGTTACTATCATCAGTGATGGaataaaatatgtttt
catgAAGAAACATGCAAACAAAACTTGTCAACAA

Coding sequence (CDS) from alignment at scaffold_60:1685593..1686226

>TCONS_00071553 ID=TCONS_00071553|Name=TCONS_00071553|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_60:1685593..1686226 (Clytia hemisphaerica)
agagaaattcaaaaattgaattatgaGTCAAAGATTGAATTGATGGAAGC
TCAAATGAAAAATGTCAGTTTGGAAAAAGACAATCAAACGTTAGGTCATC
AATTGGAGATGTTGAAGTTGAAGAATTCACATGAAGCTGAAACGAAACAA
GTTGCCGCTGACAAAGATCTTCAAAATAAACTgactgaaatggaaaaaca
actTGCTATAAAGGACAAGGAGATATTAGACACGAAAAACCAGATGGCAC
TCAAAGAAAACCAATGGGAAAACGAATGTAAAATGAAACTAATGAAAAAC
GACAAGGAAATgctggaaaaagaaaatgatttcaaaCTTCAAATCAAAGA
TTTAGAAAGCTCCAAAAAGAACAACAACCAACCGGAATCTAAAATGGCAg
tcataaaagaaaaatatcctCATGTTTTCacgaaagaagaaaagtttgCT
TGGGGAGCTGATGTTTTCTTCGGATTCAGAGAGATGAGATGGGAGGAAAG
TGCTTACGAGTCTTACGAAGCTTGGTACATAGGAATCAGTTCACTTTTGA
CAAACAAGAGACAAGTTACTATCATCAGTGATGGaataaaatatgttttc
atgAAGAAACATGCAAACAAAACTTGTCAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044454XLOC_044454Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071553-exon-scaffold_60-1491911889:1685593..1686226TCONS_00071553-exon-scaffold_60-1491911889:1685593..1686226Clytia hemisphaericaexon
TCONS_00071553-exon-scaffold_60-1510915933:1685593..1686226TCONS_00071553-exon-scaffold_60-1510915933:1685593..1686226Clytia hemisphaericaexon
TCONS_00071553-exon-scaffold_60-1575043694:1685593..1686226TCONS_00071553-exon-scaffold_60-1575043694:1685593..1686226Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071553-proteinTCONS_00071553-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1685593..1686226 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.223317	0	0.33772	0.355828	1.07323	0.6346	1.86302	2.01149	2.03142	1.35462	5.09837	5.15727	5.53557	4.96894	1.28562	2.22193	7.65507	4.61904	1.58723	1.07644	1.29057	2.89382	5.91872	4.4581	3.49166	1.26691	0.79215	0.223037
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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