TCONS_00071541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071541
Unique NameTCONS_00071541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071541 ID=TCONS_00071541|Name=TCONS_00071541|organism=Clytia hemisphaerica|type=transcript|length=578bp
gtaacttttatggcacttttagcctgctaaaagactaataagtcaaagga
caaatgtttcaagccaatccaagaagtatttgtccctttaagccatttta
ttctcaattttacgcCTTGATTCGCGAaggtttatgctcgcgaaaaatat
tttttccgttaaattcgcgaaagttaactGACTCAACATTACTCCCACCA
TTTGAGCAAGCTTTTTTCAGTcgatttctcatttttttacatattttcgg
ATTGTTAAACATTTTAGTGACACGGTTACCACACCACGATTCCTATCAtc
tctgattttaaaatactcTTGTTTGAAAACAAACTTTAGGAAAATTTGTG
GACGAAAAGAAAAGCAATAAAAACCTGTGTTGGGCACGGTTAGGATTATG
CATTTTCTTTGATATGACTAAATTTATGATAATTCATGTAAATACATCAT
TTACATTTTATGTTGCACAGATGATTTTTTAGCTATATTTAACCACATGT
AAAATTATAACCATATTGAAACACATATCTCAGTTTAAAGACTCTTGCCC
GAGAGAAGTCCCCACGGGGGCACTAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_60:1111715..1112292

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071541 ID=TCONS_00071541|Name=TCONS_00071541|organism=Clytia hemisphaerica|type=transcript|length=578bp|location=Sequence derived from alignment at scaffold_60:1111715..1112292 (Clytia hemisphaerica)
CTTTAGTGCCCCCGTGGGGACTTCTCTCGGGCAAGAGTCTTTAAACTGAG
ATATGTGTTTCAATATGGTTATAATTTTACATGTGGTTAAATATAGCTAA
AAAATCATCTGTGCAACATAAAATGTAAATGATGTATTTACATGAATTAT
CATAAATTTAGTCATATCAAAGAAAATGCATAATCCTAACCGTGCCCAAC
ACAGGTTTTTATTGCTTTTCTTTTCGTCCACAAATTTTCCTAAAGTTTGT
TTTCAAACAAgagtattttaaaatcagagaTGATAGGAATCGTGGTGTGG
TAACCGTGTCACTAAAATGTTTAACAATccgaaaatatgtaaaaaaatga
gaaatcgACTGAAAAAAGCTTGCTCAAATGGTGGGAGTAATGTTGAGTCa
gttaactttcgcgaatttaacggaaaaaatatttttcgcgagcataaacc
tTCGCGAATCAAGgcgtaaaattgagaataaaatggcttaaagggacaaa
tacttcttggattggcttgaaacatttgtcctttgacttattagtctttt
agcaggctaaaagtgccataaaagttac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044442XLOC_044442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071541-exon-scaffold_60-1491911889:1111715..1112292TCONS_00071541-exon-scaffold_60-1491911889:1111715..1112292Clytia hemisphaericaexon
TCONS_00071541-exon-scaffold_60-1510915933:1111715..1112292TCONS_00071541-exon-scaffold_60-1510915933:1111715..1112292Clytia hemisphaericaexon
TCONS_00071541-exon-scaffold_60-1575043694:1111715..1112292TCONS_00071541-exon-scaffold_60-1575043694:1111715..1112292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1111715..1112292 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.404561	0.377187	1.45138	1.28832	1.05122	0.929019	0.623093	1.05862	0.325662	0.50697	0.201527	0.647665	0.833898	1.1289	0.563908	0.236141	0	0.225289	2.17724	1.53122	1.97781	1.39169	0.44825	0.403836	0.206784	0.553413	0.279848	1.00693	0.459869	0.327504
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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