TCONS_00071540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071540
Unique NameTCONS_00071540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071540 ID=TCONS_00071540|Name=TCONS_00071540|organism=Clytia hemisphaerica|type=transcript|length=326bp
gacatgttttttaattgtttcgttttcaggggtcttgggaaatcatcatt
catttctaatataatgaatgaactGAAATTATGCCCTGATGATGGTTGCG
TGGAAAAGATGaactttaaaaattcaaaataattttttctaaagcttaaa
tctgTCATGACTTATGCTTCAACAAAGTGCGGTCCAAAAATGAGCCAATA
CTTAGCATTTCAGTGGGAGCAAATACATAGCATTTGGATTTAGAGGCTTG
TATATCTCTCAATCTTTCTGCTATGACTCTAATACTTTGCACATGCCTTT
TTATACCTTATAAGATCAATATACCG
Run BLAST on NCBI

transcript from alignment at scaffold_60:1064689..1065014

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071540 ID=TCONS_00071540|Name=TCONS_00071540|organism=Clytia hemisphaerica|type=transcript|length=326bp|location=Sequence derived from alignment at scaffold_60:1064689..1065014 (Clytia hemisphaerica)
CGGTATATTGATCTTATAAGGTATAAAAAGGCATGTGCAAAGTATTAGAG
TCATAGCAGAAAGATTGAGAGATATACAAGCCTCTAAATCCAAATGCTAT
GTATTTGCTCCCACTGAAATGCTAAGTATTGGCTCATTTTTGGACCGCAC
TTTGTTGAAGCATAAGTCATGAcagatttaagctttagaaaaaattattt
tgaatttttaaagttCATCTTTTCCACGCAACCATCATCAGGGCATAATT
TCagttcattcattatattagaaatgaatgatgatttcccaagacccctg
aaaacgaaacaattaaaaaacatgtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044441XLOC_044441Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071540-exon-scaffold_60-1491911889:1064689..1065014TCONS_00071540-exon-scaffold_60-1491911889:1064689..1065014Clytia hemisphaericaexon
TCONS_00071540-exon-scaffold_60-1510915933:1064689..1065014TCONS_00071540-exon-scaffold_60-1510915933:1064689..1065014Clytia hemisphaericaexon
TCONS_00071540-exon-scaffold_60-1575043694:1064689..1065014TCONS_00071540-exon-scaffold_60-1575043694:1064689..1065014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1064689..1065014 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.379783	0.365629	1.32823	0.400338	0	0	0.452485	0	0.255511	0.40109	0.67971	1.2871	0.459053	1.22286	0	0.184769	0.682861	0	0	0	0.93213	0	0	0	0	1.65054	1.40345	1.68095	0	0.773775
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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