TCONS_00071514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071514
Unique NameTCONS_00071514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071514 ID=TCONS_00071514|Name=TCONS_00071514|organism=Clytia hemisphaerica|type=transcript|length=601bp
aggcgggtcgctcaaggccgcgcaactttggtaggatttgttggcttcaa
atcctaccaaggagattgacctctagccttcggcttgaaactcaatgatc
cTAACCCCAATGTTCTCTCGTCCTCTGATACCAAACATTTTGAATGATGT
CCAGATCCGGGTAAAAGTTTCTGATTATCATTGATTCTGACTCATCTGGT
TTTATGCTTGGATAGAGACGCTGCATTTGGTTTTGTGGGATGGTTCGCCG
GCTCTTCAGACGTTTTCATCTATCGTTGTCACCTAGCTGAACTTACTCTC
CGAAACTTTCATGGTCCTTTTTTGATGTTTGTCCCTTTTAGCCACACTTC
AATGACTTTATCGTAAGTCCAGTCACTTTATATACACTTCATAATATCTt
ctcagattttttttcaatatagaAGAATATATCTTCGTCCTATCTTAACA
TATTTTCCGTTATCTTGGCTAATATATTATGTCATTTCTCATCGTTGGTC
AAATTTGATATATAGTGTCCTTTTTCTTTGCATATGTAACAAACTATTGA
TTGTTCATATTGTTCTTTCCTTGATCTGCTTTAAGTTCTTCGACTTGACT
T
Run BLAST on NCBI

transcript from alignment at scaffold_60:704942..705542

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071514 ID=TCONS_00071514|Name=TCONS_00071514|organism=Clytia hemisphaerica|type=transcript|length=601bp|location=Sequence derived from alignment at scaffold_60:704942..705542 (Clytia hemisphaerica)
AAGTCAAGTCGAAGAACTTAAAGCAGATCAAGGAAAGAACAATATGAACA
ATCAATAGTTTGTTACATATGCAAAGAAAAAGGACACTATATATCAAATT
TGACCAACGATGAGAAATGACATAATATATTAGCCAAGATAACGGAAAAT
ATGTTAAGATAGGACGAAGATATATTCTtctatattgaaaaaaaatctga
gaAGATATTATGAAGTGTATATAAAGTGACTGGACTTACGATAAAGTCAT
TGAAGTGTGGCTAAAAGGGACAAACATCAAAAAAGGACCATGAAAGTTTC
GGAGAGTAAGTTCAGCTAGGTGACAACGATAGATGAAAACGTCTGAAGAG
CCGGCGAACCATCCCACAAAACCAAATGCAGCGTCTCTATCCAAGCATAA
AACCAGATGAGTCAGAATCAATGATAATCAGAAACTTTTACCCGGATCTG
GACATCATTCAAAATGTTTGGTATCAGAGGACGAGAGAACATTGGGGTTA
ggatcattgagtttcaagccgaaggctagaggtcaatctccttggtagga
tttgaagccaacaaatcctaccaaagttgcgcggccttgagcgacccgcc
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044415XLOC_044415Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071514-exon-scaffold_60-1491911889:704942..705542TCONS_00071514-exon-scaffold_60-1491911889:704942..705542Clytia hemisphaericaexon
TCONS_00071514-exon-scaffold_60-1510915933:704942..705542TCONS_00071514-exon-scaffold_60-1510915933:704942..705542Clytia hemisphaericaexon
TCONS_00071514-exon-scaffold_60-1575043694:704942..705542TCONS_00071514-exon-scaffold_60-1575043694:704942..705542Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:704942..705542 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0941275	0	0	0	0	0	0.319611	0.327263	0.527132	0.27989	0.531558	0.109744	0.198145	0	0.277438	0.335313	2.11247	2.43848	0	0	0.247476	0	0.120774	0	0.440329	2.98957	1.09757	1.26294	0.605206	0.244781
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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