TCONS_00071511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071511
Unique NameTCONS_00071511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length849

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071511 ID=TCONS_00071511|Name=TCONS_00071511|organism=Clytia hemisphaerica|type=transcript|length=849bp
GTTGGATATCTAAAGCGGCGACCTCATAATTTTATTTACGTGATGAAAAG
AGGAGACATTGAATGTCACGTTAAAAGTTATTTGGGCTAAAAATATGCAT
TTCTCAATCTTCAATAGCTCTTCAAAGTTGCTCCATAAATTCGCCGAGAA
AGTCACTGCGAGAATAGCTTTACCGTCAGCCGAGGAAGATCTTCTCTAAA
CGAATCCCAAGAGAAACATAATGTGATTTCGAAGCAATTATAAGAACTTT
GCCCTGACGTCACCAGACATTGATGATAAACGTGCAGATAATTTGGTGCT
TTATTAGTATAAAGTAAGGTAAagggaaaaccctttttttattagaagtc
GATGATGTTGGATTTTCTTCATTAGAACATTAGAATATGTCAAACAATTC
TTGGAATTCACCATCTGATCCACATAATATGTTGGATGCAAATTCTAATG
ATTTAAATCTAAGATTATGGTAACTAATTAAGGAGCCTCCGGTACACTTG
AAGACGCGTTTGTCATGCTCTTTCCATGTTGGTGTGACAGTTGTGTATGt
attttaggcgtacaaactttggCGAGCAGAAACTTAAATCCGATAAAGGC
TCTTCGACTATAACAGGTATTAAACTATAAAATGATgtcgaaaatttgat
atttattacgattttcAGGTTCTATAGATTTCCaattcttttgagaaatt
ttcacaagcaTAAACTTGGCCTgttcagaattttcaaagacagttACTTT
CGCCAAAAAGGCCAAAATGTGCAAAAGTCGCGAAAAATTCTGCTGGCGAA
AGTTTATGCAGAAAAGAAATTTCTCTTTcaggccattcgcgaaagttta
Run BLAST on NCBI

transcript from alignment at scaffold_60:667733..668581

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071511 ID=TCONS_00071511|Name=TCONS_00071511|organism=Clytia hemisphaerica|type=transcript|length=849bp|location=Sequence derived from alignment at scaffold_60:667733..668581 (Clytia hemisphaerica)
taaactttcgcgaatggcctgAAAGAGAAATTTCTTTTCTGCATAAACTT
TCGCCAGCAGAATTTTTCGCGACTTTTGCACATTTTGGCCTTTTTGGCGA
AAGTaactgtctttgaaaattctgaacAGGCCAAGTTTAtgcttgtgaaa
atttctcaaaagaattGGAAATCTATAGAACCTgaaaatcgtaataaata
tcaaattttcgacATCATTTTATAGTTTAATACCTGTTATAGTCGAAGAG
CCTTTATCGGATTTAAGTTTCTGCTCGccaaagtttgtacgcctaaaata
CATACACAACTGTCACACCAACATGGAAAGAGCATGACAAACGCGTCTTC
AAGTGTACCGGAGGCTCCTTAATTAGTTACCATAATCTTAGATTTAAATC
ATTAGAATTTGCATCCAACATATTATGTGGATCAGATGGTGAATTCCAAG
AATTGTTTGACATATTCTAATGTTCTAATGAAGAAAATCCAACATCATCg
acttctaataaaaaaagggttttccctTTACCTTACTTTATACTAATAAA
GCACCAAATTATCTGCACGTTTATCATCAATGTCTGGTGACGTCAGGGCA
AAGTTCTTATAATTGCTTCGAAATCACATTATGTTTCTCTTGGGATTCGT
TTAGAGAAGATCTTCCTCGGCTGACGGTAAAGCTATTCTCGCAGTGACTT
TCTCGGCGAATTTATGGAGCAACTTTGAAGAGCTATTGAAGATTGAGAAA
TGCATATTTTTAGCCCAAATAACTTTTAACGTGACATTCAATGTCTCCTC
TTTTCATCACGTAAATAAAATTATGAGGTCGCCGCTTTAGATATCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044412XLOC_044412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071511-exon-scaffold_60-1491911889:667733..668581TCONS_00071511-exon-scaffold_60-1491911889:667733..668581Clytia hemisphaericaexon
TCONS_00071511-exon-scaffold_60-1510915933:667733..668581TCONS_00071511-exon-scaffold_60-1510915933:667733..668581Clytia hemisphaericaexon
TCONS_00071511-exon-scaffold_60-1575043694:667733..668581TCONS_00071511-exon-scaffold_60-1575043694:667733..668581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:667733..668581 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.590643	0.724351	0.876703	0.776121	0.346548	0.128949	0.428528	0.727227	0.624139	0.536496	1.01882	0.3081	0.345846	0.396622	0.0844421	0.336941	0.306145	0.10505	0	0.304774	0.317488	0.706419	0.334533	0.470333	0.648704	0.756883	0.31309	0.559627	0.501673	0.316716
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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