TCONS_00071508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071508
Unique NameTCONS_00071508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071508 ID=TCONS_00071508|Name=TCONS_00071508|organism=Clytia hemisphaerica|type=transcript|length=378bp
TACTAACTGTCTTTGACCTTGCTCAATAtatataccacccccaaaaataa
gGATCCGTCTCTCTACGGTGCATTCCAGGTGAATTTCACACCCCAGTGAG
GTTTAATGAGGtgtatttttacgtttttacctGTCTTTACCAGGTTTTTA
CCACTAACTActttcaaacaaataaaaatataacaaattatGGAGTAGGT
CAACCGCAGTGGGGGCTGGTTGGgggaaaaattgatgaataacgagacaa
aaacacaaaaaaagagTCATTTCCccagtttttccttttttgtaaaaagt
ataATCATATCTCTCGATGAAACTGAggaaaaaaagtagttttaacCAGT
TTCTAACCTAGTTAAAGTGACAATAATG
Run BLAST on NCBI

transcript from alignment at scaffold_60:632108..632485

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071508 ID=TCONS_00071508|Name=TCONS_00071508|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at scaffold_60:632108..632485 (Clytia hemisphaerica)
CATTATTGTCACTTTAACTAGGTTAGAAACTGgttaaaactacttttttt
ccTCAGTTTCATCGAGAGATATGATtatactttttacaaaaaaggaaaaa
ctggGGAAATGActctttttttgtgtttttgtctcgttattcatcaattt
ttcccCCAACCAGCCCCCACTGCGGTTGACCTACTCCataatttgttata
tttttatttgtttgaaagTAGTTAGTGGTAAAAACCTGGTAAAGACaggt
aaaaacgtaaaaatacaCCTCATTAAACCTCACTGGGGTGTGAAATTCAC
CTGGAATGCACCGTAGAGAGACGGATCcttatttttgggggtggtatata
TATTGAGCAAGGTCAAAGACAGTTAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044409XLOC_044409Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071508-exon-scaffold_60-1491911889:632108..632485TCONS_00071508-exon-scaffold_60-1491911889:632108..632485Clytia hemisphaericaexon
TCONS_00071508-exon-scaffold_60-1510915933:632108..632485TCONS_00071508-exon-scaffold_60-1510915933:632108..632485Clytia hemisphaericaexon
TCONS_00071508-exon-scaffold_60-1575043694:632108..632485TCONS_00071508-exon-scaffold_60-1575043694:632108..632485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:632108..632485 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.944354	0.418768	1.32624	3.06735	3.23316	2.75304	2.51438	2.27405	0.923109	1.16481	1.55903	0.879053	1.01618	0.289986	0.773904	0	0	0	0	0.977962	0.362024	1.48502	0	0.397481	1.51556	3.06703	2.63261	3.04077	4.17121	3.50838
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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