TCONS_00071506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071506
Unique NameTCONS_00071506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071506 ID=TCONS_00071506|Name=TCONS_00071506|organism=Clytia hemisphaerica|type=transcript|length=334bp
CCTTGCAAGATAATACCAATAAGggtaaaaagtcaaaatttgaacTTGTG
CTATAATAAGCTACAATTATTTTTAAGAGTCATAATAtaacaaaatttat
ttcaacaactattttctccattttttgaCAGCAAATAAAAAGATTAAGAA
TTAAATTAACAGTCATTATTGCTATTAGAAGATTTCTAAACATTTGATGG
GCGAAGTAGTGGAGACTAAGGTCATTGACACCGTTAGACGAAGCACAATC
ATAGAATCTATTGTCAAAGAGGAGATCATCCACAATGCTGCTGGCAAAGA
ATCTGATGAAGACGAAAGCAGTGATGCCAGGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_60:611039..611372

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071506 ID=TCONS_00071506|Name=TCONS_00071506|organism=Clytia hemisphaerica|type=transcript|length=334bp|location=Sequence derived from alignment at scaffold_60:611039..611372 (Clytia hemisphaerica)
CACCCTGGCATCACTGCTTTCGTCTTCATCAGATTCTTTGCCAGCAGCAT
TGTGGATGATCTCCTCTTTGACAATAGATTCTATGATTGTGCTTCGTCTA
ACGGTGTCAATGACCTTAGTCTCCACTACTTCGCCCATCAAATGTTTAGA
AATCTTCTAATAGCAATAATGACTGTTAATTTAATTCTTAATCTTTTTAT
TTGCTGtcaaaaaatggagaaaatagttgttgaaataaattttgttaTAT
TATGACTCTTAAAAATAATTGTAGCTTATTATAGCACAAgttcaaatttt
gactttttaccCTTATTGGTATTATCTTGCAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044407XLOC_044407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071506-exon-scaffold_60-1491911889:611039..611372TCONS_00071506-exon-scaffold_60-1491911889:611039..611372Clytia hemisphaericaexon
TCONS_00071506-exon-scaffold_60-1510915933:611039..611372TCONS_00071506-exon-scaffold_60-1510915933:611039..611372Clytia hemisphaericaexon
TCONS_00071506-exon-scaffold_60-1575043694:611039..611372TCONS_00071506-exon-scaffold_60-1575043694:611039..611372Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:611039..611372 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.463462	1.73731	2.19026	0.658056	2.68969	2.3764	3.66507	3.88384	0.668154	1.24704	0	0.28091	0.523903	2.25744	0.906082	1.58783	2.14229	0.308213	2.60829	0.638505	2.33986	2.44187	1.9336	3.02056	22.6711	13.0008	2.55533	0.8806	0.970003	1.01413
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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