TCONS_00071494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071494
Unique NameTCONS_00071494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071494 ID=TCONS_00071494|Name=TCONS_00071494|organism=Clytia hemisphaerica|type=transcript|length=350bp
ATAAAATTCGTTTACCATTATTCAATTCCACGTAACCTTTATTAATGAAG
ATGAGAAGACGCTGCATATCTGGAGGCGTCCCTTCTTTGTCTTGAATTTG
AAGTTTAATGGAAAACACAGTATCACTTGGTTTTGCCTGTAGAGTGATAA
TTTTCCCAAATAATGTTTTTGCGTATATAATTATACTATCCATTAAGATC
AGATCTAGAACAGATTTACTCTGTACCCTGCAGTCATTTAGGGTAGATTC
ATCTTCCAAAGTCCTCCCATTGAATGAAAGACATTGCATACTAGTCAAAA
TTCCCATTCTAGAttcgatcaaaatttttaaagtatgTATCGTATCAGAA
Run BLAST on NCBI

protein sequence of TCONS_00071494-protein

>TCONS_00071494-protein ID=TCONS_00071494-protein|Name=TCONS_00071494-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
SDTIHTLKILIESRMGILTSMQCLSFNGRTLEDESTLNDCRVQSKSVLDL
ILMDSIIIYAKTLFGKIITLQAKPSDTVFSIKLQIQDKEGTPPDMQRLLI
FINKGYVELNNGKRIL
Run BLAST on NCBI

transcript from alignment at scaffold_60:146954..147303

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071494 ID=TCONS_00071494|Name=TCONS_00071494|organism=Clytia hemisphaerica|type=transcript|length=350bp|location=Sequence derived from alignment at scaffold_60:146954..147303 (Clytia hemisphaerica)
TTCTGATACGATAcatactttaaaaattttgatcgaaTCTAGAATGGGAA
TTTTGACTAGTATGCAATGTCTTTCATTCAATGGGAGGACTTTGGAAGAT
GAATCTACCCTAAATGACTGCAGGGTACAGAGTAAATCTGTTCTAGATCT
GATCTTAATGGATAGTATAATTATATACGCAAAAACATTATTTGGGAAAA
TTATCACTCTACAGGCAAAACCAAGTGATACTGTGTTTTCCATTAAACTT
CAAATTCAAGACAAAGAAGGGACGCCTCCAGATATGCAGCGTCTTCTCAT
CTTCATTAATAAAGGTTACGTGGAATTGAATAATGGTAAACGAATTTTAT

Coding sequence (CDS) from alignment at scaffold_60:146954..147303

>TCONS_00071494 ID=TCONS_00071494|Name=TCONS_00071494|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_60:146954..147303 (Clytia hemisphaerica)
TCTGATACGATAcatactttaaaaattttgatcgaaTCTAGAATGGGAAT
TTTGACTAGTATGCAATGTCTTTCATTCAATGGGAGGACTTTGGAAGATG
AATCTACCCTAAATGACTGCAGGGTACAGAGTAAATCTGTTCTAGATCTG
ATCTTAATGGATAGTATAATTATATACGCAAAAACATTATTTGGGAAAAT
TATCACTCTACAGGCAAAACCAAGTGATACTGTGTTTTCCATTAAACTTC
AAATTCAAGACAAAGAAGGGACGCCTCCAGATATGCAGCGTCTTCTCATC
TTCATTAATAAAGGTTACGTGGAATTGAATAATGGTAAACGAATTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044395XLOC_044395Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071494-proteinTCONS_00071494-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071494-exon-scaffold_60-1491911889:146954..147303TCONS_00071494-exon-scaffold_60-1491911889:146954..147303Clytia hemisphaericaexon
TCONS_00071494-exon-scaffold_60-1510915933:146954..147303TCONS_00071494-exon-scaffold_60-1510915933:146954..147303Clytia hemisphaericaexon
TCONS_00071494-exon-scaffold_60-1575043694:146954..147303TCONS_00071494-exon-scaffold_60-1575043694:146954..147303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:146954..147303 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.284891	0.557443	0	0	4.20538	3.93702	6.36093	2.36371	2.03936	3.51906	1.33873	1.39028	5.14351	7.51302	3.58884	3.09764	2.67472	3.35868	1.70293	2.1359	0.86549	1.836	4.05222	5.06311	5.86524	5.89133	5.30618	3.69895
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00071494 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.511e-24
Identity = 54/115 (46.96%), Postives = 73/115 (63.48%), Query Frame = -2 
Query:   11 SDTIHTLKILIESRMGILTSMQCLSFNGRTLEDESTLNDCRVQSKSVLDLILM--DSIIIYAKTLFGKIITLQAKPSDTVFSIKLQIQDKEGTPPDMQRLLIFINKGYVELNNGK 349
            SDTI  +K  I+ + GI    Q L F G+ LED  TL+D  +Q +S L L+L     + I+ KTL GK ITL+ +PSDT+ ++K +IQDKEG PPD QR LIF  K   +L +G+
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGK---QLEDGR 130

HSP 2 Score: 93.2041 bits (230), Expect = 6.511e-24
Identity = 54/115 (46.96%), Postives = 73/115 (63.48%), Query Frame = -2 
Query:   11 SDTIHTLKILIESRMGILTSMQCLSFNGRTLEDESTLNDCRVQSKSVLDLILM--DSIIIYAKTLFGKIITLQAKPSDTVFSIKLQIQDKEGTPPDMQRLLIFINKGYVELNNGK 349
            SDTI  +K  I+ + GI    Q L F G+ LED  TL+D  +Q +S L L+L     + I+ KTL GK ITL+ +PSDT+ ++K +IQDKEG PPD QR LIF  K   +L +G+
Sbjct:   96 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGK---QLEDGR 206
The following BLAST results are available for this feature:
BLAST of TCONS_00071494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBB6.511e-2446.96Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1[more]
back to top