TCONS_00071494-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071494-protein
Unique NameTCONS_00071494-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length116

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071494-protein ID=TCONS_00071494-protein|Name=TCONS_00071494-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
SDTIHTLKILIESRMGILTSMQCLSFNGRTLEDESTLNDCRVQSKSVLDL
ILMDSIIIYAKTLFGKIITLQAKPSDTVFSIKLQIQDKEGTPPDMQRLLI
FINKGYVELNNGKRIL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044395XLOC_044395Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071494TCONS_00071494Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956UbiquitinPRINTSPR00348UBIQUITINcoord: 87..107
score: 45.45
coord: 66..86
score: 46.44
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 1..53
e-value: 3.0
score: 9.9
coord: 56..110
e-value: 0.48
score: 18.0
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 1..52
e-value: 9.2E-12
score: 44.4
coord: 61..99
e-value: 7.3E-8
score: 31.9
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 56..105
score: 11.965
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 1..52
score: 14.36
NoneNo IPR availableGENE3D3.10.20.90coord: 1..53
e-value: 1.7E-12
score: 46.6
NoneNo IPR availableGENE3D3.10.20.90coord: 55..104
e-value: 1.2E-12
score: 47.3
NoneNo IPR availableCDDcd01769UBLcoord: 1..52
e-value: 4.53552E-8
score: 44.9506
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 1..51
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 54..99

Blast
[Close]
BLAST of TCONS_00071494-protein vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.388e-25
Identity = 54/115 (46.96%), Postives = 73/115 (63.48%), Query Frame = 0 
Query:    1 SDTIHTLKILIESRMGILTSMQCLSFNGRTLEDESTLNDCRVQSKSVLDLILM--DSIIIYAKTLFGKIITLQAKPSDTVFSIKLQIQDKEGTPPDMQRLLIFINKGYVELNNGK 113
            SDTI  +K  I+ + GI    Q L F G+ LED  TL+D  +Q +S L L+L     + I+ KTL GK ITL+ +PSDT+ ++K +IQDKEG PPD QR LIF  K   +L +G+
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGK---QLEDGR 130

HSP 2 Score: 93.2041 bits (230), Expect = 9.388e-25
Identity = 54/115 (46.96%), Postives = 73/115 (63.48%), Query Frame = 0 
Query:    1 SDTIHTLKILIESRMGILTSMQCLSFNGRTLEDESTLNDCRVQSKSVLDLILM--DSIIIYAKTLFGKIITLQAKPSDTVFSIKLQIQDKEGTPPDMQRLLIFINKGYVELNNGK 113
            SDTI  +K  I+ + GI    Q L F G+ LED  TL+D  +Q +S L L+L     + I+ KTL GK ITL+ +PSDT+ ++K +IQDKEG PPD QR LIF  K   +L +G+
Sbjct:   96 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGK---QLEDGR 206
The following BLAST results are available for this feature:
BLAST of TCONS_00071494-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBB9.388e-2546.96Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1[more]
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