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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071486 ID=TCONS_00071486|Name=TCONS_00071486|organism=Clytia hemisphaerica|type=transcript|length=849bp
ATTGGTCACTGTAATAAGAATAAATACAACCCCAAGGGGTAAAGAAGtca
cgaaaattaaaaaaattaaagctCCAAGAAATACAACCACATTCTTCCGG
TACTTCACTTTAACGGGGCTTTCTGCCTTATAAccaatttttgatttgat
gtaAAATTCACGTATGATAAGTGCATATGTAACGATTATTATACAAAGTG
GGacaaaaaaaccaaaaagatATAATGCACTTTTGTAAAGTTGTACCGTC
CAATGTTCGGCGCTGATACGTCTACAGAAACCATTGATTTTATCATAttt
gaaaaacataaaattcgGGGCCAGTGACACGAAATCCACTAACCAAAATG
CGATGATGTGATAGACAAAATTTCGTTTGTCTTCTCTTAAAAATGGCTTC
TTAATGATATGATAAAATTGAACATTCATGAAAGCTAGTGTTTGCATTGT
TACAAATGCGGCAACCCAAAATACTGGCGCTCCTCTAACAAACCAACATA
TCAAATCGTTTCGTCGGATTGGAACCAAATCTTCCACGTTTCTATGGAAA
TAGATAACGAATGGTAGAGCACCGATATTCTGAATGATGTTTGAGATTCC
CAAATTCATCAAGAAGAAGTTAAATAAACTGTGCGAGATTTTTCGGCGCC
GGTATAAATGAATGACGAgagaattgatgaaaattccCAAAGTGATGACA
AGTAGATTGACCGATATAAAAGCGATGGATATGGGTCTTTCGAAAGTTAA
TTCGTTCGTTATAAATTGGTTAGCTGTTGTTGAGTTGTTCCTGGCTAACT
CCATAATTTCAGACAAAAGAGTTGAAAATATGAACGAGAAGAAAATTTC Run BLAST on NCBI protein sequence of TCONS_00071486-protein >TCONS_00071486-protein ID=TCONS_00071486-protein|Name=TCONS_00071486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
EIFFSFIFSTLLSEIMELARNNSTTANQFITNELTFERPISIAFISVNLL
VITLGIFINSLVIHLYRRRKISHSLFNFFLMNLGISNIIQNIGALPFVIY
FHRNVEDLVPIRRNDLICWFVRGAPVFWVAAFVTMQTLAFMNVQFYHIIK
KPFLREDKRNFVYHIIAFWLVDFVSLAPNFMFFKYDKINGFCRRISAEHW
TVQLYKSALYLFGFFVPLCIIIVTYALIIREFYIKSKIGYKAESPVKVKY
RKNVVVFLGALIFLIFVTSLPLGVVFILITVTN Run BLAST on NCBI transcript from alignment at scaffold_60:14938..15786 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071486 ID=TCONS_00071486|Name=TCONS_00071486|organism=Clytia hemisphaerica|type=transcript|length=849bp|location=Sequence derived from alignment at scaffold_60:14938..15786 (Clytia hemisphaerica)
GAAATTTTCTTCTCGTTCATATTTTCAACTCTTTTGTCTGAAATTATGGA
GTTAGCCAGGAACAACTCAACAACAGCTAACCAATTTATAACGAACGAAT
TAACTTTCGAAAGACCCATATCCATCGCTTTTATATCGGTCAATCTACTT
GTCATCACTTTGggaattttcatcaattctcTCGTCATTCATTTATACCG
GCGCCGAAAAATCTCGCACAGTTTATTTAACTTCTTCTTGATGAATTTGG
GAATCTCAAACATCATTCAGAATATCGGTGCTCTACCATTCGTTATCTAT
TTCCATAGAAACGTGGAAGATTTGGTTCCAATCCGACGAAACGATTTGAT
ATGTTGGTTTGTTAGAGGAGCGCCAGTATTTTGGGTTGCCGCATTTGTAA
CAATGCAAACACTAGCTTTCATGAATGTTCAATTTTATCATATCATTAAG
AAGCCATTTTTAAGAGAAGACAAACGAAATTTTGTCTATCACATCATCGC
ATTTTGGTTAGTGGATTTCGTGTCACTGGCCCcgaattttatgtttttca
aaTATGATAAAATCAATGGTTTCTGTAGACGTATCAGCGCCGAACATTGG
ACGGTACAACTTTACAAAAGTGCATTATatctttttggtttttttgtCCC
ACTTTGTATAATAATCGTTACATATGCACTTATCATACGTGAATTTtaca
tcaaatcaaaaattggTTATAAGGCAGAAAGCCCCGTTAAAGTGAAGTAC
CGGAAGAATGTGGTTGTATTTCTTGGagctttaatttttttaattttcgt
gaCTTCTTTACCCCTTGGGGTTGTATTTATTCTTATTACAGTGACCAAT Coding sequence (CDS) from alignment at scaffold_60:14938..15786 >TCONS_00071486 ID=TCONS_00071486|Name=TCONS_00071486|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at scaffold_60:14938..15786 (Clytia hemisphaerica)
GAAATTTTCTTCTCGTTCATATTTTCAACTCTTTTGTCTGAAATTATGGA
GTTAGCCAGGAACAACTCAACAACAGCTAACCAATTTATAACGAACGAAT
TAACTTTCGAAAGACCCATATCCATCGCTTTTATATCGGTCAATCTACTT
GTCATCACTTTGggaattttcatcaattctcTCGTCATTCATTTATACCG
GCGCCGAAAAATCTCGCACAGTTTATTTAACTTCTTCTTGATGAATTTGG
GAATCTCAAACATCATTCAGAATATCGGTGCTCTACCATTCGTTATCTAT
TTCCATAGAAACGTGGAAGATTTGGTTCCAATCCGACGAAACGATTTGAT
ATGTTGGTTTGTTAGAGGAGCGCCAGTATTTTGGGTTGCCGCATTTGTAA
CAATGCAAACACTAGCTTTCATGAATGTTCAATTTTATCATATCATTAAG
AAGCCATTTTTAAGAGAAGACAAACGAAATTTTGTCTATCACATCATCGC
ATTTTGGTTAGTGGATTTCGTGTCACTGGCCCcgaattttatgtttttca
aaTATGATAAAATCAATGGTTTCTGTAGACGTATCAGCGCCGAACATTGG
ACGGTACAACTTTACAAAAGTGCATTATatctttttggtttttttgtCCC
ACTTTGTATAATAATCGTTACATATGCACTTATCATACGTGAATTTtaca
tcaaatcaaaaattggTTATAAGGCAGAAAGCCCCGTTAAAGTGAAGTAC
CGGAAGAATGTGGTTGTATTTCTTGGagctttaatttttttaattttcgt
gaCTTCTTTACCCCTTGGGGTTGTATTTATTCTTATTACAGTGACCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071486-exon-scaffold_60-1491911889:14938..15786 | TCONS_00071486-exon-scaffold_60-1491911889:14938..15786 | Clytia hemisphaerica | exon |
| TCONS_00071486-exon-scaffold_60-1510915933:14938..15786 | TCONS_00071486-exon-scaffold_60-1510915933:14938..15786 | Clytia hemisphaerica | exon |
| TCONS_00071486-exon-scaffold_60-1575043694:14938..15786 | TCONS_00071486-exon-scaffold_60-1575043694:14938..15786 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:14938..15786 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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