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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071485 ID=TCONS_00071485|Name=TCONS_00071485|organism=Clytia hemisphaerica|type=transcript|length=967bp
tttttctcgaggGGTTGGATCGTCACCAAAATTCTAACTCTAAGGGATCA
GGCGCTCACATCAGAATCAATTGGTCTTCTTTGAAACCATCTGCGTCTCC
AATATTGTCGAATTTTAGTGAAACATGTCAAATAAACGATAGGGTTGGAC
ATAATGTTGATCAATGCAAAGATGAAAttcaatttgaatatttcttcAGA
CATTTCTGAGAAGAGTAGAACTAAAGAGAAGAAAATCATCGGTGCAAGGA
AAACACATATCCAAATATTCAGTTTGAATACATCATTTATACTTCGTTTC
AACTTGATGATTACATCCAACCTTTCTGCTTCAACACCGTGAGGGTTTCG
GGCGTGTGGAATGTTTGTTTCACTCGCATCACGAACACGTATCGTGATTT
TCCCCAAGACAACAATAGTGATACAGGTTGCAGTTCGTAAAACAACGAAG
GAAATTAACGTACCACGATTCGCGAAAAAAACATTGCGTGTTGTGATCCT
GCTAACGTTACCAATCATAGATAAACAACAAAAGACGACTGCACAAAAAA
GAACTGAAATCAAAACGGTAATATTGATTCTACGTTTGCAGACTAATTCG
TTATACCGTAAAGGGTATTTGACAGCAATGAACCGGTCTACCACAATTAA
AATTGTGACAAACATTGATGAGGCGTTGAAAATATATACAAGTAGCCACA
GCCATTTAATAACTGTTTGGTTGACAATGCTACTTAAGCCAACTGTGTAA
AGGTTTTTTAGAACTATTAAGATGCATTGTATCGAATCGACGCTTGATAA
TATCCGAATCAAATGATACTGATTTTCATCATTCACTCGTAGTTTGTAAA
TAACCCACTGTAGAATAGCGTGAAAGAGTAAAACGATCATTTCAATAATG
GTATAGACTATAGCAAATGTTGATTCGGGTTCTGTATCGTTTTCGGGAAC
GTGCGATGTGAAATTCA Run BLAST on NCBI protein sequence of TCONS_00071485-protein >TCONS_00071485-protein ID=TCONS_00071485-protein|Name=TCONS_00071485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
NFTSHVPENDTEPESTFAIVYTIIEMIVLLFHAILQWVIYKLRVNDENQY
HLIRILSSVDSIQCILIVLKNLYTVGLSSIVNQTVIKWLWLLVYIFNASS
MFVTILIVVDRFIAVKYPLRYNELVCKRRINITVLISVLFCAVVFCCLSM
IGNVSRITTRNVFFANRGTLISFVVLRTATCITIVVLGKITIRVRDASET
NIPHARNPHGVEAERLDVIIKLKRSINDVFKLNIWICVFLAPMIFFSLVL
LFSEMSEEIFKLNFIFALINIMSNPIVYLTCFTKIRQYWRRRWFQRRPID
SDVSA Run BLAST on NCBI transcript from alignment at scaffold_60:11279..12245 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071485 ID=TCONS_00071485|Name=TCONS_00071485|organism=Clytia hemisphaerica|type=transcript|length=967bp|location=Sequence derived from alignment at scaffold_60:11279..12245 (Clytia hemisphaerica)
TGAATTTCACATCGCACGTTCCCGAAAACGATACAGAACCCGAATCAACA
TTTGCTATAGTCTATACCATTATTGAAATGATCGTTTTACTCTTTCACGC
TATTCTACAGTGGGTTATTTACAAACTACGAGTGAATGATGAAAATCAGT
ATCATTTGATTCGGATATTATCAAGCGTCGATTCGATACAATGCATCTTA
ATAGTTCTAAAAAACCTTTACACAGTTGGCTTAAGTAGCATTGTCAACCA
AACAGTTATTAAATGGCTGTGGCTACTTGTATATATTTTCAACGCCTCAT
CAATGTTTGTCACAATTTTAATTGTGGTAGACCGGTTCATTGCTGTCAAA
TACCCTTTACGGTATAACGAATTAGTCTGCAAACGTAGAATCAATATTAC
CGTTTTGATTTCAGTTCTTTTTTGTGCAGTCGTCTTTTGTTGTTTATCTA
TGATTGGTAACGTTAGCAGGATCACAACACGCAATGTTTTTTTCGCGAAT
CGTGGTACGTTAATTTCCTTCGTTGTTTTACGAACTGCAACCTGTATCAC
TATTGTTGTCTTGGGGAAAATCACGATACGTGTTCGTGATGCGAGTGAAA
CAAACATTCCACACGCCCGAAACCCTCACGGTGTTGAAGCAGAAAGGTTG
GATGTAATCATCAAGTTGAAACGAAGTATAAATGATGTATTCAAACTGAA
TATTTGGATATGTGTTTTCCTTGCACCGATGATTTTCTTCTCTTTAGTTC
TACTCTTCTCAGAAATGTCTgaagaaatattcaaattgaaTTTCATCTTT
GCATTGATCAACATTATGTCCAACCCTATCGTTTATTTGACATGTTTCAC
TAAAATTCGACAATATTGGAGACGCAGATGGTTTCAAAGAAGACCAATTG
ATTCTGATGTGAGCGCCTGATCCCTTAGAGTTAGAATTTTGGTGACGATC
CAACCcctcgagaaaaa Coding sequence (CDS) from alignment at scaffold_60:11279..12245 >TCONS_00071485 ID=TCONS_00071485|Name=TCONS_00071485|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_60:11279..12245 (Clytia hemisphaerica)
AATTTCACATCGCACGTTCCCGAAAACGATACAGAACCCGAATCAACATT
TGCTATAGTCTATACCATTATTGAAATGATCGTTTTACTCTTTCACGCTA
TTCTACAGTGGGTTATTTACAAACTACGAGTGAATGATGAAAATCAGTAT
CATTTGATTCGGATATTATCAAGCGTCGATTCGATACAATGCATCTTAAT
AGTTCTAAAAAACCTTTACACAGTTGGCTTAAGTAGCATTGTCAACCAAA
CAGTTATTAAATGGCTGTGGCTACTTGTATATATTTTCAACGCCTCATCA
ATGTTTGTCACAATTTTAATTGTGGTAGACCGGTTCATTGCTGTCAAATA
CCCTTTACGGTATAACGAATTAGTCTGCAAACGTAGAATCAATATTACCG
TTTTGATTTCAGTTCTTTTTTGTGCAGTCGTCTTTTGTTGTTTATCTATG
ATTGGTAACGTTAGCAGGATCACAACACGCAATGTTTTTTTCGCGAATCG
TGGTACGTTAATTTCCTTCGTTGTTTTACGAACTGCAACCTGTATCACTA
TTGTTGTCTTGGGGAAAATCACGATACGTGTTCGTGATGCGAGTGAAACA
AACATTCCACACGCCCGAAACCCTCACGGTGTTGAAGCAGAAAGGTTGGA
TGTAATCATCAAGTTGAAACGAAGTATAAATGATGTATTCAAACTGAATA
TTTGGATATGTGTTTTCCTTGCACCGATGATTTTCTTCTCTTTAGTTCTA
CTCTTCTCAGAAATGTCTgaagaaatattcaaattgaaTTTCATCTTTGC
ATTGATCAACATTATGTCCAACCCTATCGTTTATTTGACATGTTTCACTA
AAATTCGACAATATTGGAGACGCAGATGGTTTCAAAGAAGACCAATTGAT
TCTGATGTGAGCGCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071485-exon-scaffold_60-1491911889:11279..12245 | TCONS_00071485-exon-scaffold_60-1491911889:11279..12245 | Clytia hemisphaerica | exon |
| TCONS_00071485-exon-scaffold_60-1510915933:11279..12245 | TCONS_00071485-exon-scaffold_60-1510915933:11279..12245 | Clytia hemisphaerica | exon |
| TCONS_00071485-exon-scaffold_60-1575043694:11279..12245 | TCONS_00071485-exon-scaffold_60-1575043694:11279..12245 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:11279..12245 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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