TCONS_00071484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071484
Unique NameTCONS_00071484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071484 ID=TCONS_00071484|Name=TCONS_00071484|organism=Clytia hemisphaerica|type=transcript|length=1725bp
AGGCACCAGTAGTTCCTGATTTTCCGGTGGGGAGTCAACGTGTGGTCCAG
AATCTTGGGATGACGTCATGATGACAGGAAAGATTTCTGGACATTGTCGT
AACCATGCTGGTTGCCATGGATTACTTGCTGAATTTTATTTCAAGTGTGA
GTCACGACACGCTGGGAACACGTTGGTCACACCTTTGACACTGCTAAGGA
CGAACACTTTAGATGTACCTTGTCTTGCATGTACAGATGTTTGCGAGATT
GTATTGGTTTTCCCATGCGAAGAAACGCACGTCATTTGTGTGGAATGTTT
TGCCAGATACGTCGATACCAATTTGAACAGGCGACAATTCATTCTGTCGG
AAAGAATTGGATACACCTTGGCTTGCCCTGGTCTTGGAGATGGTTGCGAA
GAAAGTTATATACAAGATATTCATCATTTTCTTTTGGCCGGTAAAAACCA
GTACGAGCGATTTAAGAACTTTGCAACGGAAGAATTTGTGTTACAGAACG
GTGGTATTTTATGTCCTGGTGAAAATTGTGGTAATGGATTGATGTTGGAT
GATGATTCAAGGAGAATTGTGTGTTATCGAGGTAGAGGTGGCTGTGGAcT
GGTATTTTGTCGGCAATGTCGAAACCAATACCACGATGGTGAATGTAGGG
CTAATATTCAAGAACGAGCACAAGCTACAAACGAGTCTTATCAAATCGAT
CGAAACCAAGCACAACAAGCACGTTGGTTAGAAGAGGCTCACACTTCGGC
TGCTATCGACCGATTCACAAAACGATGTCCTGGATGTAGTACACCAACTG
AAAAAAGTGGTGGTTGTAACCACATGACATGTACACGATGTCGTTACGAG
TGGTGTTGGTTATGTCTTATCGAATGGGGACGAAATTGTGAATCTGATCA
TTGGTTTAATAGAGCACGTTGAGAAAAGATGCTTTCGGATTGGTTGGTTT
GGTGTCAATCCCTCTCAGGGCAAGGGTTGAATTCATGAATCATTATTCGG
TTCCTGATCAAATAGTTTTGTATATATTCGACTTATTTTTGATAGCGCTA
TTGAAAGATTTCCTAACGTGAATATTGATAGTTTCCAATATTGCTACCTA
GTTGAATTCAAGGATATGCTAatgattcatgatattcatggcgtaatgtt
ttctacggaaataccccggttttaagcaatagtggcaaatttaatcaaga
caaaagttgtataaatttgccactactggcaaaaaccggggtctttccgt
aaaaaacattacgtcatgaatataatGATTGACACTAGTGAAGAATGATC
ATCTATCGAAACATGAATCGGGTTATTATCGGAGTAAAAATTACGCATCG
GATTATGAACATAAATCACAAGCATCGGCGCTTATTTGTACACTTTAAAC
GATATCACTATCTTATCTGTGGCTATGTATGGATTATGAAACTTTGACCA
ACAGTTCAACTAGAATATAACTATGAGGAGCACATACAATCAAACATTTG
TTCACGAAGGGACAAGTCCAAACTTAGACTCGTTGTTTTAAATCAAGTTG
AAATTGTTTCAATCAATCTGTTACTTTCCCAAAACTTGTGTCGGCTAAAG
ATCCTGATGTGACACAGGTTAATTTACAGCCTCACTCGGGCGACGATTTT
TATGAGGAGAATTTTTAAGTTGTATTCATTAGAATTTGTAAATGAGTTGA
AAGAGATTCATCAAATGCAAAAATT
Run BLAST on NCBI

protein sequence of TCONS_00071484-protein

>TCONS_00071484-protein ID=TCONS_00071484-protein|Name=TCONS_00071484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MMTGKISGHCRNHAGCHGLLAEFYFKCESRHAGNTLVTPLTLLRTNTLDV
PCLACTDVCEIVLVFPCEETHVICVECFARYVDTNLNRRQFILSERIGYT
LACPGLGDGCEESYIQDIHHFLLAGKNQYERFKNFATEEFVLQNGGILCP
GENCGNGLMLDDDSRRIVCYRGRGGCGLVFCRQCRNQYHDGECRANIQER
AQATNESYQIDRNQAQQARWLEEAHTSAAIDRFTKRCPGCSTPTEKSGGC
NHMTCTRCRYEWCWLCLIEWGRNCESDHWFNRAR
Run BLAST on NCBI

transcript from alignment at scaffold_60:1740562..1747998-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071484 ID=TCONS_00071484|Name=TCONS_00071484|organism=Clytia hemisphaerica|type=transcript|length=7437bp|location=Sequence derived from alignment at scaffold_60:1740562..1747998- (Clytia hemisphaerica)
AGGCACCAGTAGTTCCTGATTTTCCGGTGGGGAGTCAACGTGTGTATGTA
CATGTTTATTTTTATAAGCAAGTGTCTGCCCCTATGTCTTTTCTTTTGTC
CATGCTTTTGTTTCTTTCCTCTATTCTTAAACAATAGAACCATTGTCTAG
GTACCAAAAACTGAGCCTGAATATGCTTATAAATGTTATGCCTATAGAAA
AAAAACATGTTTTGTTTGGATCAAACTTGTTGATCTCTTTTATTTGAAAA
ACGAGCCTCCATCAAATTTCAGTCCAATCGAATAAGCCAAGATTCTTATC
CATGACATTATTATTGAGTGAAAATTTGCAAAAGTAAAAACACAAATGGT
TTAATTTTTATACTGCAACTCTTTTAACTATTATTTTCTCAGGGTCCAGA
ATCTTGGGATGACGTCATGATGACAGGAAAGATTTCTGGACATTGTCGTA
ACCATGCTGGTTGCCATGGATTACTTGCTGTTAGTTTCGTTACATTTTTT
ACATATGTTTTATATTATTCATATATTTTTAAAGGCGTAGTGGTGTGGTG
GTCATCGCTTTCGACTCCCATCTTAGAGGACCTGACTTCGATTCCCATCA
TATGCTACTACGATCCATTTTGCAAGTGAATATACCTTCGTCGAGACCAA
ACCCACTATTCCATTTGAGTGGAATCGGGTGCCACTACCCTAATATACCG
AGTGTACCGGGTGTGCCAGAAAAAAGTCCCCATCTTTGAAATGAATTTTA
TCGAGTTCTATAAACTGTTAAAGAATCAATCCTTTTGCATTAGAAAGAGG
AAGGATAAACTTAAGGGGTCGATTGCCAACTTTGGTCACCTAGATCAAAA
GTTATAGACTAAATGCTAAAACATTACTTTTCAAAAAATATCGAAAAAAG
GCGAAAAATGCAAAAGGATTGATTCGTTAATAGTTTATACATAGAACGCC
AAAAAATCACTTCAAATAAGGGGATTTTTTTCTGGGACATCTCCGCGGTA
AGAGTATGGTTATAGATGTTGCAGGCGTTGTGACACTCGCTACATATTCA
GGTGAAGAACACTGTTCTCCCAGTGCTGTTCGAGTGTCAGGGTATACGCC
ATGAATCGACAGCTCGCATGTTTCAATGGCTATCTGCACAGAGATTCATT
CCCCCGCTCCCCGGTGGTTAGAATCCATTCTGTAGGGCATGAAATCATTT
CAATATCTCTTTTTCGTACTTTGATTTCTGCAGTGAACTTTAACCAATAA
TAAAACTGGTGGCGAACCTACGGTGAATTTTCAGGTGTTCCGTATAAAAT
CTTATAACGATAACTCTCTTATAAATTCCTAGCAAGAATACTTTGGTATT
AGCCTTTAGATTGAAAATAAGTTTGAAAGATGAGTGCCCAATAGTCCTGA
TCCTTTCCAATCTTTAATGTTGAATTCGACCAAAGCCACTGATCAACCGT
TGGCGGGGGGTCAGATCAACCGTTGGGGGGGTCATCGATAATCTGGTCTT
ATAATCGATAATAAATTTAGAAAGAATCTATGGTTCACACCCCTATTCTT
TTATTTAGGAATTTTATTTCAAGTGTGAGTCACGACACGCTGGGAACACG
TTGGTCACACCTTTGACACTGCTAAGGACGAACACTTTAGATGTACCTTG
TCTTGCATGTACAGATGTTTGGTAAGATTGATCAACTTTCGTCTTATGCC
CGAGTTACCAGGTTTGCGAAATGATGGCAGGTGCCGCCCGATTTTTGAAA
ATCAGAAATCTTAAGGGGGGTCTAAAATCCTGGAAAAGACCGAAATGTAA
AAAAAACGTAAAAATTCTGAATTTTGGGACCGTAACCGGGACTTTTTTCC
CCTAAAATCTAGCCTTTTTAAGGATAAATATTGTAGTTTTTGTAACCCTT
AGGGGGTACCGAGATTAGATTTTGTGACCTTTGAGGGACTTTGAAGGCCT
AAATAAGGCACCCTAAAGAGTGGCACATACCCGTACCCTCCATTTGCCTA
ATTATCCCCCCCCCGGGTCTAATGTTGATTTTTACGTCTACTTTATACTT
GAATTTTATTTGAATCCGCTTGATTTCTTGAATCATCTTTTAATGTTGTT
ATGTTTCTATGGTTACGCGTTTTCTACTCCAACGTAGACTTGTAGGGGAA
AATAGCCTTACTTCCTGAAAACAAATAAGGAGTTCAAAATAAAAGAGTAA
AAATTTCACCGTTCTCACAACATGCTGTGCTTATTTTTATTTTCAATTTC
CAGCGAGATTGTATTGGTTTTCCCATGCGAAGAAACGCACGTCATTTGTG
TGGAATGTTTTGCCAGATACGTCGATACCAATTTGAACAGGCGACAATTC
ATTCTGTCGGAAAGAATTGGATACACCTTGGCTTGCCCTGGTCTTGGAGG
TAAGTAAAAAGTAAGGTTGTTCAAATGAGTGATTTAATTCTATAACATCC
CCTTCTCACAGACTTACTTACCCCTTCCCACAAGAAAAATTAGCCAAAAT
ATCATCCCCAGTTGAAAATTATACCCTTTTCTTGCCCGTGGAAAATAATC
AGATATTCTCACTGCAAAATATTGTGCTATTTTTTTTTGCCCAAAAACGA
TGTAATTCAAATAAAAAAACATAGGAGTGTCAATCCGCATCGAGTTTTGG
TTCGTTATTTTTTTCCTACCGGGTCTGTGAGAAGGGGGTGTATTCCATTT
GTCAGTTTTAGTGTTTCTTTACTTTTATCGGCTCAATACTTTTTCTAAAT
TTTATTTTCAATCGTGTGGTTTAGCGTGGATTTCCTTTAGAAAGTTAGTT
TTAAATAAGCTGAAAATGACCATAAAGATGGTGATTTTCACCGAATATAG
TATGTTTGGATTTTGTTTTTGTCGAAAACATCAATTTCGCATCAGTTGTA
ATTTCATGAAAAGGCAAAAGTTTGCAAAACGTTGAAACTAATTCAAATTA
AACTATGTTTTAGAACGATTACTAATTGGCTAGTTGATAATGTAAATACT
TTCACCTATTTCAGATGGTTGCGAAGAAAGTTATATACAAGATATTCATC
ATTTTCTTTTGGCCGGTAAAAACCAGGTGAGGCCTAAAACTCTTCCTCCA
TGTTAAAATACAGTCTGTACCGTGGCGTACTGAAAAAAGTGGACACGTTT
TTATAATTTATGCGAAGTTTTATGATTTGTATTATTAAATATTCCAATCT
TAAAAAACTTTATTCAATCATATTTGGAATTGAATATCTCTTGGTTGAAC
AGATAATCTTAATCTTATTTCAATCATTCAGCCCAGTTACTCTTAGGTGC
CGAATAAAACGGGGTGGGGTTGAAAATTTTCAAAATTTTAATAAACCATA
GTCACAAGAAGAGTCTCTATGAATAAACGGGGGGGTTGGAAATTATCGCT
TCACATATTTCACTTACACCTACATAATTATAGTAAAGATAATTTATATT
TGATATTTGCTATTTGATGATAAATTTCTGAATTTTAATAAACGGGGGGT
TGGAAAATGTTCGAAAAATTAACAAGTGGGGGGGGTGTTTATTTGGCACC
TAAGAGTAAGATAATGAGTTTTTTCAAAAATGTGAATTTTTTTGTTGAAA
TTCAAAACTTCAAATTCGCATAAAAGCTTTTAGCTTGAGACTTAGACAAT
GGTTTTAGTGCTATTCCAAAAATATTTTATAATATTTCTAAAAGCATTCG
GTTAATGGCCGTTTGATTCAAGTGGTCAAAGAGTTATATCCTTAAGTCTG
GGACTTGGTATATTGGCCACTTTTGAACGTATAATACATGTCATTCGGGT
TTGAAGGGTTGAAAAGGCAAAAGGTCTCTATACAGAGGACCACCTCTTTG
ATATTAACACCCCCTTCTCACAGACCCACTGGGACCTCTTCCCACTGAAA
AAATTAGCCAGAATATCGTCCCCAGTGAAAAATATACTCAAATTTTTGCC
CATGCTGAAAATAATCAGATAAGCAAATCCTCACTGCAAAATATTGTGCA
ATTTTTTCAACCCCTGATGAACTTTTGGGCTCGAAAACAATGGAATTAAA
ATCCCCAGCCATCAAAACAATGAAAATATCAATCACCATTGAGTCCATTA
TTTTTATCTCCACTGGCTGAAAAGATCCTACCGGGTCTGTGAGAAGGGGG
TGTATATTAGGATGGTCCTAATTGGACGCAAAATATTTCAATTTGATCAT
TTAAAATTATATTCAACTTATATTGTTTTTCAAAAATCATTTATATTATA
CAGTACGAGCGATTTAAGAACTTTGCAACGGAAGAATTTGTGTTACAGAA
CGGTGGTATTTTATGTCCTGGTGAAAATTGTGGTAATGGATTGATGTTGG
ATGATGATTCAAGGAGAATTGTGTGTTATCGAGGTAGAGGTGGCTGTGGA
GTAAGGTTATATTTTCCATTTGTTAACTCTTAACTTTTTCAGGGCGACGA
AAACCGAAAAAATCAAAGTTTTTGAAAGCTCCAACTTCAGATGCAATTAT
CTCAGCTTTGGAGCAATCTAAATATAGGTCATGTTTGAGTTCGTTGGAAA
GCTCTTTTTATGCTCTATTTTTTTAGCGTGTTAGATTTTTAAATTAGATC
CTCAAAAAACTTCGAACGGAATTAGCTGGGGCCGTCCTGAAAAAGTTAAT
TGTGGAATAAATTATCCAACGTATTCTAATACCTTTCTAATATTTTACAC
TTTGTCACCTCGAATAAAAAGAAATTATTTTTCTAAACAGATATGTAGTC
GATTTTTGTAGGCGCACTTCATATCAATTGGGGAAATACTTTTGAAAGAA
TCCAATAAAAACAATAAGCTTTATTTTTCGATCTGGAATTATTGATTATT
GGAAATAATTCTAAATTTGTTCTTTTTTTAGCTGGTATTTNTATTGATTA
TTGGAAATAATTCTAAATTTGTTCTTTTTTTAGCTGGTATTTTGTCGGCA
ATGTCGAAACCAATACCACGATGGTGAATGTAGGGCTAATATTCAAGAAC
GAGCACAAGCTACAAACGAGGTAAATAGTCGAGTATACAAACTTTTTTTA
TAAGAATAACTTCTATAAGAATATCATGGTGAGATTTCGCGGAGTTAGAA
CAATAGGCCTTTTGTTTAGAACAATAGAAAAACAAGAATAATGCTCACCC
CTAGTCAAAATTCACTTGTTCTCATTAAAAAAAGCATGTACCGTTCTTTA
CTAATGACAAGATTGAATGTATTTCACGTCTATCACTCGTTCTACGGCCA
GTGAAGATTTCGCAGAAACCGGGTCTGTTTAAGTTAGACTATTCTTGTTA
TTTGTCTATTTTCGAAAACACCTGCCAATCCTTTAATAAAATGCGAAGAG
TTTCTCAGGAACGATTGACGCTAAATTTCCGTGCCTTTGAAAATATTAAT
GCAATGACTTCAGTTATTAGACCTTAATTATGCCGTTAAATCTACATTTT
GAAGGCAATGGCTTCAATCCTTACTGGTAAAGCATAACCCAGTCTACTCT
TGCTTCAAGGGTTGAAAGCATGACCTTCATAGTTGTATAGTTGAGTCTCT
TCAACTCGAATGTCTCCTAAACTCGAACAAGTTCTCTTTACCCTTCTTTG
AACAATGCCTATCCAATAACTCGAACGAATTTGTGTCCCCGTTTGGGTTC
GAGTTATAGAGACATACAACCCAATATAATATTTTTATTTCATGGTTTTC
AGTCTTATCAAATCGATCGAAACCAAGCACAACAAGCACGTTGGTTAGAA
GAGGCTCACACTTCGGCTGCTATCGACCGATTCACAAAACGATGTCCTGG
ATGTAGTACACCAACTGAAAAAAGTGGTAAGCTGATACTAAGTTTACTTG
TTATCTTTCAGCCGTAACTGGGCCATCAACAACTGAAACAGCGACACATT
TTTCTAGAATCGCCGACATGACCGACGGTAAAAACTCCAGAATTATTTTT
TTTTTGTCTTATTTGCCTCATTTTTTAATAAGCAACCCGGTTGCCAAGGC
TTAACGGCCAGAATTAGCCAATATTTTCCAATATCTCGTAAAGTAAAAGC
TTTCTAAGTAATCTAAAGATGGCAAAAGATAGCCCTAGACACCAAATAAG
TATAAATATGGTATAATATCAGCTGATTGGTTGCTTGCACTTACGACCAA
TCAGCTGTGGGGTCTATGGTGTGATGTCAGAGATACTACAGTGATGCATA
TCATGAATGGGCTCTTCCAGAAAATGTCCGTACAATAATGTCCGGGGGTG
GAGGATATATAGAGGGGGTAGCGAAAAATCATCAAAATTTTCCTTGTCCG
GGGGTAAATTTGCTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGCAA
AAGTCACTTTGGTCAAATTTTTTCTGGAAAAGCCCAATAAGATATCAAAT
TCATGTTTAATTTTTCTCCAGGTGGTTGTAACCACATGACATGTACACGA
TGTCGTTACGAGTGGTGTTGGTTATGTCTTATCGAATGGGGACGAAATTG
TGAATCTGATCATTGGTTTAATAGAGCACGTTGAGAAAAGATGCTTTCGG
ATTGGTTGGTTTGGTGTCAATCCCTCTCAGGGCAAGGGTTGAATTCATGA
ATCATTATTCGGTTCCTGATCAAATAGTTTTGTATATATTCGACTTATTT
TTGATAGCGCTATTGAAAGATTTCCTAACGTGAATATTGATAGTTTCCAA
TATTGCTACCTAGTTGAATTCAAGGATATGCTAATGATTCATGATATTCA
TGGCGTAATGTTTTCTACGGAAATACCCCGGTTTTAAGCAATAGTGGCAA
ATTTAATCAAGACAAAAGTTGTATAAATTTGCCACTACTGGCAAAAACCG
GGGTCTTTCCGTAAAAAACATTACGTCATGAATATAATGATTGACACTAG
TGAAGAATGATCATCTATCGAAACATGAATCGGGTTATTATCGGAGTAAA
AATTACGCATCGGATTATGAACATAAATCACAAGCATCGGCGCTTATTTG
TACACTTTAAACGATATCACTATCTTATCTGTGGCTATGTATGGATTATG
AAACTTTGACCAACAGTTCAACTAGAATATAACTATGAGGAGCACATACA
ATCAAACATTTGTTCACGAAGGGACAAGTCCAAACTTAGACTCGTTGTTT
TAAATCAAGTTGAAATTGTTTCAATCAATCTGTTACTTTCCCAAAACTTG
TGTCGGCTAAAGATCCTGATGTGACACAGGTTAATTTACAGCCTCACTCG
GGCGACGATTTTTATGAGGAGAATTTTTAAGTTGTATTCATTAGAATTTG
TAAATGAGTTGAAAGAGATTCATCAAATGCAAAAATT

Coding sequence (CDS) from alignment at scaffold_60:1740562..1747998-

>TCONS_00071484 ID=TCONS_00071484|Name=TCONS_00071484|organism=Clytia hemisphaerica|type=CDS|length=6840bp|location=Sequence derived from alignment at scaffold_60:1740562..1747998- (Clytia hemisphaerica)
GTGGTTGTAACCACATGACATGTACACGATGTCGTTACGAGTGGTGTTGG
TTATGTCTTATCGAATGGGGACGAAATTGTGAATCTGATCATTGGTTTAA
TAGAGCACGTTGATCTTATCAAATCGATCGAAACCAAGCACAACAAGCAC
GTTGGTTAGAAGAGGCTCACACTTCGGCTGCTATCGACCGATTCACAAAA
CGATGTCCTGGATGTAGTACACCAACTGAAAAAAGTGCTGGTATTTTGTC
GGCAATGTCGAAACCAATACCACGATGGTGAATGTAGGGCTAATATTCAA
GAACGAGCACAAGCTACAAACGAGTACGAGCGATTTAAGAACTTTGCAAC
GGAAGAATTTGTGTTACAGAACGGTGGTATTTTATGTCCTGGTGAAAATT
GTGGTAATGGATTGATGTTGGATGATGATTCAAGGAGAATTGTGTGTTAT
CGAGGTAGAGGTGGCTGTGGAATGGTTGCGAAGAAAGTTATATACAAGAT
ATTCATCATTTTCTTTTGGCCGGTAAAAACCAGCGAGATTGTATTGGTTT
TCCCATGCGAAGAAACGCACGTCATTTGTGTGGAATGTTTTGCCAGATAC
GTCGATACCAATTTGAACAGGCGACAATTCATTCTGTCGGAAAGAATTGG
ATACACCTTGGCTTGCCCTGGTCTTGGAGGAATTTTATTTCAAGTGTGAG
TCACGACACGCTGGGAACACGTTGGTCACACCTTTGACACTGCTAAGGAC
GAACACTTTAGATGTACCTTGTCTTGCATGTACAGATGTTTGATGATGAC
AGGAAAGATTTCTGGACATTGTCGTAACCATGCTGGTTGCCATGGATTAC
TTGCTGTGGTTGTAACCACATGACATGTACACGATGTCGTTACGAGTGGT
GTTGGTTATGTCTTATCGAATGGGGACGAAATTGTGAATCTGATCATTGG
TTTAATAGAGCACGTTGATCTTATCAAATCGATCGAAACCAAGCACAACA
AGCACGTTGGTTAGAAGAGGCTCACACTTCGGCTGCTATCGACCGATTCA
CAAAACGATGTCCTGGATGTAGTACACCAACTGAAAAAAGTGCTGGTATT
TTGTCGGCAATGTCGAAACCAATACCACGATGGTGAATGTAGGGCTAATA
TTCAAGAACGAGCACAAGCTACAAACGAGTACGAGCGATTTAAGAACTTT
GCAACGGAAGAATTTGTGTTACAGAACGGTGGTATTTTATGTCCTGGTGA
AAATTGTGGTAATGGATTGATGTTGGATGATGATTCAAGGAGAATTGTGT
GTTATCGAGGTAGAGGTGGCTGTGGAATGGTTGCGAAGAAAGTTATATAC
AAGATATTCATCATTTTCTTTTGGCCGGTAAAAACCAGCGAGATTGTATT
GGTTTTCCCATGCGAAGAAACGCACGTCATTTGTGTGGAATGTTTTGCCA
GATACGTCGATACCAATTTGAACAGGCGACAATTCATTCTGTCGGAAAGA
ATTGGATACACCTTGGCTTGCCCTGGTCTTGGAGGAATTTTATTTCAAGT
GTGAGTCACGACACGCTGGGAACACGTTGGTCACACCTTTGACACTGCTA
AGGACGAACACTTTAGATGTACCTTGTCTTGCATGTACAGATGTTTGATG
ATGACAGGAAAGATTTCTGGACATTGTCGTAACCATGCTGGTTGCCATGG
ATTACTTGCTGTGGTTGTAACCACATGACATGTACACGATGTCGTTACGA
GTGGTGTTGGTTATGTCTTATCGAATGGGGACGAAATTGTGAATCTGATC
ATTGGTTTAATAGAGCACGTTGATCTTATCAAATCGATCGAAACCAAGCA
CAACAAGCACGTTGGTTAGAAGAGGCTCACACTTCGGCTGCTATCGACCG
ATTCACAAAACGATGTCCTGGATGTAGTACACCAACTGAAAAAAGTGCTG
GTATTTTGTCGGCAATGTCGAAACCAATACCACGATGGTGAATGTAGGGC
TAATATTCAAGAACGAGCACAAGCTACAAACGAGTACGAGCGATTTAAGA
ACTTTGCAACGGAAGAATTTGTGTTACAGAACGGTGGTATTTTATGTCCT
GGTGAAAATTGTGGTAATGGATTGATGTTGGATGATGATTCAAGGAGAAT
TGTGTGTTATCGAGGTAGAGGTGGCTGTGGAATGGTTGCGAAGAAAGTTA
TATACAAGATATTCATCATTTTCTTTTGGCCGGTAAAAACCAGCGAGATT
GTATTGGTTTTCCCATGCGAAGAAACGCACGTCATTTGTGTGGAATGTTT
TGCCAGATACGTCGATACCAATTTGAACAGGCGACAATTCATTCTGTCGG
AAAGAATTGGATACACCTTGGCTTGCCCTGGTCTTGGAGGAATTTTATTT
CAAGTGTGAGTCACGACACGCTGGGAACACGTTGGTCACACCTTTGACAC
TGCTAAGGACGAACACTTTAGATGTACCTTGTCTTGCATGTACAGATGTT
TGATGATGACAGGAAAGATTTCTGGACATTGTCGTAACCATGCTGGTTGC
CATGGATTACTTGCTGTGGTTGTAACCACATGACATGTACACGATGTCGT
TACGAGTGGTGTTGGTTATGTCTTATCGAATGGGGACGAAATTGTGAATC
TGATCATTGGTTTAATAGAGCACGTTGATCTTATCAAATCGATCGAAACC
AAGCACAACAAGCACGTTGGTTAGAAGAGGCTCACACTTCGGCTGCTATC
GACCGATTCACAAAACGATGTCCTGGATGTAGTACACCAACTGAAAAAAG
TGCTGGTATTTTGTCGGCAATGTCGAAACCAATACCACGATGGTGAATGT
AGGGCTAATATTCAAGAACGAGCACAAGCTACAAACGAGTACGAGCGATT
TAAGAACTTTGCAACGGAAGAATTTGTGTTACAGAACGGTGGTATTTTAT
GTCCTGGTGAAAATTGTGGTAATGGATTGATGTTGGATGATGATTCAAGG
AGAATTGTGTGTTATCGAGGTAGAGGTGGCTGTGGAATGGTTGCGAAGAA
AGTTATATACAAGATATTCATCATTTTCTTTTGGCCGGTAAAAACCAGCG
AGATTGTATTGGTTTTCCCATGCGAAGAAACGCACGTCATTTGTGTGGAA
TGTTTTGCCAGATACGTCGATACCAATTTGAACAGGCGACAATTCATTCT
GTCGGAAAGAATTGGATACACCTTGGCTTGCCCTGGTCTTGGAGGAATTT
TATTTCAAGTGTGAGTCACGACACGCTGGGAACACGTTGGTCACACCTTT
GACACTGCTAAGGACGAACACTTTAGATGTACCTTGTCTTGCATGTACAG
ATGTTTGATGATGACAGGAAAGATTTCTGGACATTGTCGTAACCATGCTG
GTTGCCATGGATTACTTGCTGTGGTTGTAACCACATGACATGTACACGAT
GTCGTTACGAGTGGTGTTGGTTATGTCTTATCGAATGGGGACGAAATTGT
GAATCTGATCATTGGTTTAATAGAGCACGTTGATCTTATCAAATCGATCG
AAACCAAGCACAACAAGCACGTTGGTTAGAAGAGGCTCACACTTCGGCTG
CTATCGACCGATTCACAAAACGATGTCCTGGATGTAGTACACCAACTGAA
AAAAGTGCTGGTATTTTGTCGGCAATGTCGAAACCAATACCACGATGGTG
AATGTAGGGCTAATATTCAAGAACGAGCACAAGCTACAAACGAGTACGAG
CGATTTAAGAACTTTGCAACGGAAGAATTTGTGTTACAGAACGGTGGTAT
TTTATGTCCTGGTGAAAATTGTGGTAATGGATTGATGTTGGATGATGATT
CAAGGAGAATTGTGTGTTATCGAGGTAGAGGTGGCTGTGGAATGGTTGCG
AAGAAAGTTATATACAAGATATTCATCATTTTCTTTTGGCCGGTAAAAAC
CAGCGAGATTGTATTGGTTTTCCCATGCGAAGAAACGCACGTCATTTGTG
TGGAATGTTTTGCCAGATACGTCGATACCAATTTGAACAGGCGACAATTC
ATTCTGTCGGAAAGAATTGGATACACCTTGGCTTGCCCTGGTCTTGGAGG
AATTTTATTTCAAGTGTGAGTCACGACACGCTGGGAACACGTTGGTCACA
CCTTTGACACTGCTAAGGACGAACACTTTAGATGTACCTTGTCTTGCATG
TACAGATGTTTGATGATGACAGGAAAGATTTCTGGACATTGTCGTAACCA
TGCTGGTTGCCATGGATTACTTGCTGTGGTTGTAACCACATGACATGTAC
ACGATGTCGTTACGAGTGGTGTTGGTTATGTCTTATCGAATGGGGACGAA
ATTGTGAATCTGATCATTGGTTTAATAGAGCACGTTGATCTTATCAAATC
GATCGAAACCAAGCACAACAAGCACGTTGGTTAGAAGAGGCTCACACTTC
GGCTGCTATCGACCGATTCACAAAACGATGTCCTGGATGTAGTACACCAA
CTGAAAAAAGTGCTGGTATTTTGTCGGCAATGTCGAAACCAATACCACGA
TGGTGAATGTAGGGCTAATATTCAAGAACGAGCACAAGCTACAAACGAGT
ACGAGCGATTTAAGAACTTTGCAACGGAAGAATTTGTGTTACAGAACGGT
GGTATTTTATGTCCTGGTGAAAATTGTGGTAATGGATTGATGTTGGATGA
TGATTCAAGGAGAATTGTGTGTTATCGAGGTAGAGGTGGCTGTGGAATGG
TTGCGAAGAAAGTTATATACAAGATATTCATCATTTTCTTTTGGCCGGTA
AAAACCAGCGAGATTGTATTGGTTTTCCCATGCGAAGAAACGCACGTCAT
TTGTGTGGAATGTTTTGCCAGATACGTCGATACCAATTTGAACAGGCGAC
AATTCATTCTGTCGGAAAGAATTGGATACACCTTGGCTTGCCCTGGTCTT
GGAGGAATTTTATTTCAAGTGTGAGTCACGACACGCTGGGAACACGTTGG
TCACACCTTTGACACTGCTAAGGACGAACACTTTAGATGTACCTTGTCTT
GCATGTACAGATGTTTGATGATGACAGGAAAGATTTCTGGACATTGTCGT
AACCATGCTGGTTGCCATGGATTACTTGCTGTGGTTGTAACCACATGACA
TGTACACGATGTCGTTACGAGTGGTGTTGGTTATGTCTTATCGAATGGGG
ACGAAATTGTGAATCTGATCATTGGTTTAATAGAGCACGTTGATCTTATC
AAATCGATCGAAACCAAGCACAACAAGCACGTTGGTTAGAAGAGGCTCAC
ACTTCGGCTGCTATCGACCGATTCACAAAACGATGTCCTGGATGTAGTAC
ACCAACTGAAAAAAGTGCTGGTATTTTGTCGGCAATGTCGAAACCAATAC
CACGATGGTGAATGTAGGGCTAATATTCAAGAACGAGCACAAGCTACAAA
CGAGTACGAGCGATTTAAGAACTTTGCAACGGAAGAATTTGTGTTACAGA
ACGGTGGTATTTTATGTCCTGGTGAAAATTGTGGTAATGGATTGATGTTG
GATGATGATTCAAGGAGAATTGTGTGTTATCGAGGTAGAGGTGGCTGTGG
AATGGTTGCGAAGAAAGTTATATACAAGATATTCATCATTTTCTTTTGGC
CGGTAAAAACCAGCGAGATTGTATTGGTTTTCCCATGCGAAGAAACGCAC
GTCATTTGTGTGGAATGTTTTGCCAGATACGTCGATACCAATTTGAACAG
GCGACAATTCATTCTGTCGGAAAGAATTGGATACACCTTGGCTTGCCCTG
GTCTTGGAGGAATTTTATTTCAAGTGTGAGTCACGACACGCTGGGAACAC
GTTGGTCACACCTTTGACACTGCTAAGGACGAACACTTTAGATGTACCTT
GTCTTGCATGTACAGATGTTTGATGATGACAGGAAAGATTTCTGGACATT
GTCGTAACCATGCTGGTTGCCATGGATTACTTGCTGTGGTTGTAACCACA
TGACATGTACACGATGTCGTTACGAGTGGTGTTGGTTATGTCTTATCGAA
TGGGGACGAAATTGTGAATCTGATCATTGGTTTAATAGAGCACGTTGATC
TTATCAAATCGATCGAAACCAAGCACAACAAGCACGTTGGTTAGAAGAGG
CTCACACTTCGGCTGCTATCGACCGATTCACAAAACGATGTCCTGGATGT
AGTACACCAACTGAAAAAAGTGCTGGTATTTTGTCGGCAATGTCGAAACC
AATACCACGATGGTGAATGTAGGGCTAATATTCAAGAACGAGCACAAGCT
ACAAACGAGTACGAGCGATTTAAGAACTTTGCAACGGAAGAATTTGTGTT
ACAGAACGGTGGTATTTTATGTCCTGGTGAAAATTGTGGTAATGGATTGA
TGTTGGATGATGATTCAAGGAGAATTGTGTGTTATCGAGGTAGAGGTGGC
TGTGGAATGGTTGCGAAGAAAGTTATATACAAGATATTCATCATTTTCTT
TTGGCCGGTAAAAACCAGCGAGATTGTATTGGTTTTCCCATGCGAAGAAA
CGCACGTCATTTGTGTGGAATGTTTTGCCAGATACGTCGATACCAATTTG
AACAGGCGACAATTCATTCTGTCGGAAAGAATTGGATACACCTTGGCTTG
CCCTGGTCTTGGAGGAATTTTATTTCAAGTGTGAGTCACGACACGCTGGG
AACACGTTGGTCACACCTTTGACACTGCTAAGGACGAACACTTTAGATGT
ACCTTGTCTTGCATGTACAGATGTTTGATGATGACAGGAAAGATTTCTGG
ACATTGTCGTAACCATGCTGGTTGCCATGGATTACTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044385XLOC_044385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071484-exon-scaffold_60-1575043694:1747956..1747998TCONS_00071484-exon-scaffold_60-1575043694:1747956..1747998Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1575043694:1747520..1747606TCONS_00071484-exon-scaffold_60-1575043694:1747520..1747606Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1575043694:1746328..1746440TCONS_00071484-exon-scaffold_60-1575043694:1746328..1746440Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1575043694:1745600..1745745TCONS_00071484-exon-scaffold_60-1575043694:1745600..1745745Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1575043694:1744923..1744984TCONS_00071484-exon-scaffold_60-1575043694:1744923..1744984Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1575043694:1743599..1743745TCONS_00071484-exon-scaffold_60-1575043694:1743599..1743745Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1575043694:1742979..1743065TCONS_00071484-exon-scaffold_60-1575043694:1742979..1743065Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1575043694:1742173..1742296TCONS_00071484-exon-scaffold_60-1575043694:1742173..1742296Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1575043694:1740562..1741477TCONS_00071484-exon-scaffold_60-1575043694:1740562..1741477Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1510915933:1747956..1747998TCONS_00071484-exon-scaffold_60-1510915933:1747956..1747998Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1510915933:1747520..1747606TCONS_00071484-exon-scaffold_60-1510915933:1747520..1747606Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1510915933:1746328..1746440TCONS_00071484-exon-scaffold_60-1510915933:1746328..1746440Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1510915933:1745600..1745745TCONS_00071484-exon-scaffold_60-1510915933:1745600..1745745Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1510915933:1744923..1744984TCONS_00071484-exon-scaffold_60-1510915933:1744923..1744984Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1510915933:1743599..1743745TCONS_00071484-exon-scaffold_60-1510915933:1743599..1743745Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1510915933:1742979..1743065TCONS_00071484-exon-scaffold_60-1510915933:1742979..1743065Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1510915933:1742173..1742296TCONS_00071484-exon-scaffold_60-1510915933:1742173..1742296Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1510915933:1740562..1741477TCONS_00071484-exon-scaffold_60-1510915933:1740562..1741477Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1491911889:1747956..1747998TCONS_00071484-exon-scaffold_60-1491911889:1747956..1747998Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1491911889:1747520..1747606TCONS_00071484-exon-scaffold_60-1491911889:1747520..1747606Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1491911889:1746328..1746440TCONS_00071484-exon-scaffold_60-1491911889:1746328..1746440Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1491911889:1745600..1745745TCONS_00071484-exon-scaffold_60-1491911889:1745600..1745745Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1491911889:1744923..1744984TCONS_00071484-exon-scaffold_60-1491911889:1744923..1744984Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1491911889:1743599..1743745TCONS_00071484-exon-scaffold_60-1491911889:1743599..1743745Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1491911889:1742979..1743065TCONS_00071484-exon-scaffold_60-1491911889:1742979..1743065Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1491911889:1742173..1742296TCONS_00071484-exon-scaffold_60-1491911889:1742173..1742296Clytia hemisphaericaexon
TCONS_00071484-exon-scaffold_60-1491911889:1740562..1741477TCONS_00071484-exon-scaffold_60-1491911889:1740562..1741477Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071484-proteinTCONS_00071484-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1740562..1747998 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.4249	17.2521	11.6151	9.20015	4.10502	3.51772	9.02869	9.24138	9.22119	8.46011	10.0813	10.5097	9.10559	10.0749	10.6195	11.6247	11.0864	12.9661	6.39384	7.14985	9.2769	9.66793	16.9581	16.3676	13.3698	15.1377	7.79887	7.26186	11.0417	11.5701
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003977Parkin
IPR002867IBR_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005829cytosol
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
molecular_function GO:0004842 ubiquitin-protein transferase activity
Blast
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BLAST of TCONS_00071484 vs. Swiss-Prot (Human)
Match: PRKN (E3 ubiquitin-protein ligase parkin OS=Homo sapiens GN=PRKN PE=1 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 9.895e-80
Identity = 131/292 (44.86%), Postives = 180/292 (61.64%), Query Frame = 2 
Query:   47 PESWDDVMMTGKISGHCRNHAGCHGLLAEFYFKCESRHAGNTLVT-PLTLLRTNTLDVPCLACTDVCEIVLVFPCEETHVICVECFARYVDTNLNRRQFILSERIGYTLACPGLGDGCEESYIQDIHHFLLAGKNQYERFKNFATEEFVLQNGGILCPGENCGNGLMLDDDSRRIVCYRGRG-GCGLVFCRQCRNQYHDGECRANIQERAQATNESYQIDRNQAQQARWLEEAHTSAAIDRFTKRCPGCSTPTEKSGGCNHMTC--TRCRYEWCWLCLIEWGRNCESDHWFN 910
            P  WDDV++  ++SG C++   C G  AEF+FKC +    +   +  L L+ TN+ ++ C+ CTDV   VLVF C   HVIC++CF  Y  T LN RQF+   ++GY+L C     GC  S I+++HHF + G+ QY R++ +  EE VLQ GG+LCP   CG GL+ + D R++ C  G G GCG  FCR+C+  YH+GEC A + E +  T ++Y++D   A+QARW  EA +   I + TK CP C  P EK+GGC HM C   +CR EWCW C  EW R C  DHWF+
Sbjct:  180 PSCWDDVLIPNRMSGECQS-PHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVA---GCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSA-VFEASGTTTQAYRVDERAAEQARW--EAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFD 464
The following BLAST results are available for this feature:
BLAST of TCONS_00071484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRKN9.895e-8044.86E3 ubiquitin-protein ligase parkin OS=Homo sapiens... [more]
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