TCONS_00071484-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071484-protein
Unique NameTCONS_00071484-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071484-protein ID=TCONS_00071484-protein|Name=TCONS_00071484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MMTGKISGHCRNHAGCHGLLAEFYFKCESRHAGNTLVTPLTLLRTNTLDV
PCLACTDVCEIVLVFPCEETHVICVECFARYVDTNLNRRQFILSERIGYT
LACPGLGDGCEESYIQDIHHFLLAGKNQYERFKNFATEEFVLQNGGILCP
GENCGNGLMLDDDSRRIVCYRGRGGCGLVFCRQCRNQYHDGECRANIQER
AQATNESYQIDRNQAQQARWLEEAHTSAAIDRFTKRCPGCSTPTEKSGGC
NHMTCTRCRYEWCWLCLIEWGRNCESDHWFNRAR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044385XLOC_044385Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071484TCONS_00071484Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003977Parkin
IPR002867IBR_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005829cytosol
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
molecular_function GO:0004842 ubiquitin-protein transferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 198..218
NoneNo IPR availableGENE3D2.20.25.20coord: 236..278
e-value: 9.7E-10
score: 38.2
coord: 147..197
e-value: 3.7E-9
score: 36.3
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 226..273
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 140..191
IPR003977E3 ubiquitin-protein ligase parkinPRINTSPR01475PARKINcoord: 20..30
score: 54.55
coord: 35..55
score: 34.13
coord: 117..138
score: 39.39
coord: 146..162
score: 44.12
coord: 258..280
score: 58.7
IPR002867IBR domainSMARTSM00647ibrneu5coord: 130..193
e-value: 2.0E-11
score: 54.0
coord: 218..274
e-value: 1.8E-4
score: 30.8
IPR002867IBR domainPFAMPF01485IBRcoord: 130..191
e-value: 2.3E-6
score: 27.6
coord: 230..274
e-value: 5.5E-10
score: 39.2

Blast
[Close]
BLAST of TCONS_00071484-protein vs. Swiss-Prot (Human)
Match: PRKN (E3 ubiquitin-protein ligase parkin OS=Homo sapiens GN=PRKN PE=1 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 2.160e-80
Identity = 126/285 (44.21%), Postives = 175/285 (61.40%), Query Frame = 0 
Query:    1 MMTGKISGHCRNHAGCHGLLAEFYFKCESRHAGNTLVT-PLTLLRTNTLDVPCLACTDVCEIVLVFPCEETHVICVECFARYVDTNLNRRQFILSERIGYTLACPGLGDGCEESYIQDIHHFLLAGKNQYERFKNFATEEFVLQNGGILCPGENCGNGLMLDDDSRRIVCYRGRG-GCGLVFCRQCRNQYHDGECRANIQERAQATNESYQIDRNQAQQARWLEEAHTSAAIDRFTKRCPGCSTPTEKSGGCNHMTC--TRCRYEWCWLCLIEWGRNCESDHWFN 281
            ++  ++SG C++   C G  AEF+FKC +    +   +  L L+ TN+ ++ C+ CTDV   VLVF C   HVIC++CF  Y  T LN RQF+   ++GY+L C     GC  S I+++HHF + G+ QY R++ +  EE VLQ GG+LCP   CG GL+ + D R++ C  G G GCG  FCR+C+  YH+GEC A + E +  T ++Y++D   A+QARW  EA +   I + TK CP C  P EK+GGC HM C   +CR EWCW C  EW R C  DHWF+
Sbjct:  187 LIPNRMSGECQS-PHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVA---GCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSA-VFEASGTTTQAYRVDERAAEQARW--EAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFD 464
The following BLAST results are available for this feature:
BLAST of TCONS_00071484-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRKN2.160e-8044.21E3 ubiquitin-protein ligase parkin OS=Homo sapiens... [more]
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