TCONS_00071478 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071478
Unique Name	TCONS_00071478
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1915

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_60:1617904..1620654-
coding sequence from alignment at scaffold_60:1617904..1620654-

transcript sequence

>TCONS_00071478 ID=TCONS_00071478|Name=TCONS_00071478|organism=Clytia hemisphaerica|type=transcript|length=1915bp
ATCGAGTAAGACTTAAAGGGAAATATTCaagtcatttgattttttgttgg
GCAAATATGCGTCTTTTCAACAGGCTTTCGTGCTCAACTAAAAGAATTCG
ACCAACAATTGATACCAatgatgattttcgaaaatttggaaaaaagatGG
TAGACCTTATTGCAGATTACAACGAAAACGTTCCAAACATGTCGGTACTA
CCGGATGTGAAGTCGGGATACCTTGTAAAACTATTGCCAGATGAAGCGCC
AATGGAACCGGAATCATGGGAAAGTGTTTGTGAAGATTTCGAGAAAGCCA
TTGTTCCCGGTATCACGCCTTGGAATTCACCCAATTTCCACGCGTATTAC
CCAACAGCGAATAGTTATGCAGCAGTAATGGGTGGAATGTTATGTGATGC
GCTTGGTTGTGTTGGCTTCACCTGGATCGCCTCTCCAGCTTGCACTGAAC
TCGAAAGATTAACTATGGATTGGCTTGCAAAGATGTTTGGATTACCTGAA
GTTTTTCAACACGCGGGCGAAGGGAATGGCGGTGGCGTCATTCAAGGATC
CACAAGCGAATCTACGCTAATTGCAATTCTAGCAGCAAAACATCGCAAGA
TGATCGAATATGATCATGATGAAGTGTTGGCTTCTAAGCTAGTGGCGTAC
ACATCAAGACAGTCGCACTCGTCTGTTGAAAAAGGTGTGCGTTTGGCAGG
GACAAAGTTAAGGTTGGTCGATACTGATGAGAGGTTTAGGATGCGCGGGG
ATGAATTGAGGAAAGCGATCGAGGAAGATAAAGCAAAAGGTTTGATCCCT
TTCTTTGTCGGCGCGTCCGTTGGTACAACCAACGTTTGTGCGTTTGACGC
ACTCGATGAGATAAGTGCTGTTTCAGGGGAGGAAAAAATGTGGATGCATA
TAGATGCTGCGTACGCAGGGGCAGCCATGATTTGTCCCGAGTTTCGATAT
CTTGTGAAAGGGATCGAGAATACAGATTCTCTAGTTGTAAGTTGCCATAA
GTGGCTGATGGTGAATTTTGCTTGTGCCGCCATGTTTGTTCGGGATTCAC
TGGATTTGATTAATCTGTTTGATATCAATCCACTGTATTTGAAACatgaa
tatgaaaatgaaatctcAGACTTCAGACACTGGCAGATTCCTCTTGGGAG
GCGTTTTCGATCTTTGAAACTTTGGATGGTGCTTAAATCTTATGGAGTAA
AAGGACTTCAAGAAAATATACGGTGTCAAATTCAacaagcaaaatttttt
gaagagatGGTTCGCAAAGATGCTAGATTTGAAGTGATTAATGATGTCTT
GATGGGTCTTGTTTGTTTCAGATTAATTGGTGATAATGCACTGAATGAAG
ATTTGAATAAGCGAGTCAACGAGGCACGAAAAATACACATGACACCTGCA
ACTGTTGATGGACAGTTTGTTTTACGTTTCGTAGTAGCGTCTCGATTAAC
CGAGGATAAAGATATCCAATTCGCCTGGGATGAGATAAAAGACCATGCTG
GTATCCTATTGAACAATGAAGAGCCAAAGAAAAGAGGAGTTTGATGAAAC
TCACGGGCTGATTCAATCAACTCCTATCACTTGAGGGTTTTAGTGCAAAG
TcttaatttatattttattgaaCTTTAACGTACTATGGGTCCGCTGGGGG
AGGAGGGCTCTAAGATAAGGATGGGGGCTCTTAGCATTGCTCTATTAATG
TAAAAGCCATTTCATTTAGTTACGGTAGGTGCTGTATAATTAATGTAATC
GTAGTTGATTCGATTTTAGCACTAATTTACTTTATTTATATGttgaatat
ttcaaatttattcaGTTAGAATTATCCATAGATAGGTAGATTCTGTGGGG
TATAGTTAATTTTTTCAACGTTAAATGAAAAGAtattaatcaaaacaaag
aaaggtcttttaaaa

Run BLAST on NCBI

protein sequence of TCONS_00071478-protein

>TCONS_00071478-protein ID=TCONS_00071478-protein|Name=TCONS_00071478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
RVRLKGKYSSHLIFCWANMRLFNRLSCSTKRIRPTIDTNDDFRKFGKKMV
DLIADYNENVPNMSVLPDVKSGYLVKLLPDEAPMEPESWESVCEDFEKAI
VPGITPWNSPNFHAYYPTANSYAAVMGGMLCDALGCVGFTWIASPACTEL
ERLTMDWLAKMFGLPEVFQHAGEGNGGGVIQGSTSESTLIAILAAKHRKM
IEYDHDEVLASKLVAYTSRQSHSSVEKGVRLAGTKLRLVDTDERFRMRGD
ELRKAIEEDKAKGLIPFFVGASVGTTNVCAFDALDEISAVSGEEKMWMHI
DAAYAGAAMICPEFRYLVKGIENTDSLVVSCHKWLMVNFACAAMFVRDSL
DLINLFDINPLYLKHEYENEISDFRHWQIPLGRRFRSLKLWMVLKSYGVK
GLQENIRCQIQQAKFFEEMVRKDARFEVINDVLMGLVCFRLIGDNALNED
LNKRVNEARKIHMTPATVDGQFVLRFVVASRLTEDKDIQFAWDEIKDHAG
ILLNNEEPKKRGV

Run BLAST on NCBI

transcript from alignment at scaffold_60:1617904..1620654-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071478 ID=TCONS_00071478|Name=TCONS_00071478|organism=Clytia hemisphaerica|type=transcript|length=2751bp|location=Sequence derived from alignment at scaffold_60:1617904..1620654- (Clytia hemisphaerica)
ATCGAGTAAGACTTAAAGGGAAATATTCAAGTCATTTGATTTTTTGTTGG
GCAAATATGCGTCTTTTCAACAGGCTTTCGTGCTCAACTAAAAGGTATGC
TGAATTTAAAGGCCGGTCTCCACTTGCGCGCGCTGCGATCACAACTTTGG
CTTCAATCATTTTTGCTTGGAGAAAAGATTACGTCATAAAAACGTAGATA
TTTCAACTTTTTTTTCAAGCGCGATCGCTACGTCATATCACACCAATGGA
GTTGCTTCATTTTTCTTTTGACCAATAGCGTGGAAGCTTCGCTCGAAGAA
GAGCGATCGCAGCGCACGCAAGTGGAGACCGGCCTTAAGGTGGAGATATA
TCAGCTCATCTGGCAAACTTCATTAATATTAGAATCTACTGGGACATCAA
CCAAAACATAAGAAAAATATGTCAAAAAGTGCATGCATTACAAACTAACC
TTGAACTCTTGTAATTATCCCTCGATATAGCTATGACGTCAGGACCTAGC
TCCTTACTTCTCTTCTCCTTTATGGTTAGAAACCAGCCTAGGAGCTCGTC
CAATTTCTTCTCACTGATCGCGCCAGCTTTGGAAATGAATCTGGAATGAA
CAAATTATTATATTCATCTCTCATAATAATCAAAACAAGTCAATAAAAAT
AGGGCATGAACATTTGATCCAGAAACCCTTTTCTTGTTCCTGAAGTCTTC
AAAGTCACTATCACTATATATAATTGAATTCTACATACGCTTAATAGAAG
CATTACGAAAACCTAAATTTCTCATTCCAGAATTCGACCAACAATTGATA
CCAATGATGATTTTCGAAAATTTGGAAAAAAGATGGTAGACCTTATTGCA
GATTACAACGAAAACGTTCCAAACATGTCGGTACTACCGGATGTGAAGTC
GGGATACCTTGTAAAACTATTGCCAGATGAAGCGCCAATGGAACCGGAAT
CATGGGAAAGTGTTTGTGAAGATTTCGAGAAAGCCATTGTTCCCGGTATC
ACGCCTTGGAATTCACCCAATTTCCACGCGTAGGTTGATTTTCGAAGAAC
TTTCTTTTGAGAACACTGAAATCGCTGCATTTTTTTAACTAATATGATAA
TGATTTTGCTTTTCATTGGTCTAATCTGACATCACTGCAAGCACAAATAT
AAGAAAATTTCTTCTGTTTCATAATTTAGGTATTACCCAACAGCGAATAG
TTATGCAGCAGTAATGGGTGGAATGTTATGTGATGCGCTTGGTTGTGTTG
GCTTCACCTGGATCGCCTCTCCAGCTTGCACTGAACTCGAAAGATTAACT
ATGGATTGGCTTGCAAAGATGTTTGGATTACCTGAAGTTTTTCAACACGC
GGGCGAAGGGAATGGCGGTGGCGTCATTCAAGGATCCACAAGCGAATCTA
CGCTAATTGCAATTCTAGCAGCAAAACATCGCAAGATGATCGAATATGAT
CATGATGAAGTGTTGGCTTCTAAGCTAGTGGCGTACACATCAAGACAGTC
GCACTCGTCTGTTGAAAAAGGTGTGCGTTTGGCAGGGACAAAGTTAAGGT
TGGTCGATACTGATGAGAGGTTTAGGATGCGCGGGGATGAATTGAGGAAA
GCGATCGAGGAAGATAAAGCAAAAGGTTTGATCCCTTTCTTTGTCGGCGC
GTCCGTTGGTACAACCAACGTTTGTGCGTTTGACGCACTCGATGAGATAA
GTGCTGTTTCAGGGGAGGAAAAAATGTGGATGCATATAGATGCTGCGTAC
GCAGGGGCAGCCATGATTTGTCCCGAGTTTCGATATCTTGTGAAAGGGAT
CGAGAATACAGATTCTCTAGTTGTAAGTTGCCATAAGTGGCTGATGGTGA
ATTTTGCTTGTGCCGCCATGTTTGTTCGGGATTCACTGGATTTGATTAAT
CTGTTTGATATCAATCCACTGTATTTGAAACATGAATATGAAAATGAAAT
CTCAGACTTCAGACACTGGCAGATTCCTCTTGGGAGGCGTTTTCGATCTT
TGAAACTTTGGATGGTGCTTAAATCTTATGGAGTAAAAGGACTTCAAGAA
AATATACGGTGTCAAATTCAACAAGCAAAATTTTTTGAAGAGATGGTTCG
CAAAGATGCTAGATTTGAAGTGATTAATGATGTCTTGATGGGTCTTGTTT
GTTTCAGATTAATTGGTGATAATGCACTGAATGAAGATTTGAATAAGCGA
GTCAACGAGGCACGAAAAATACACATGACACCTGCAACTGTTGATGGACA
GTTTGTTTTACGTTTCGTAGTAGCGTCTCGATTAACCGAGGATAAAGATA
TCCAATTCGCCTGGGATGAGATAAAAGACCATGCTGGTATCCTATTGAAC
AATGAAGAGCCAAAGAAAAGAGGAGTTTGATGAAACTCACGGGCTGATTC
AATCAACTCCTATCACTTGAGGGTTTTAGTGCAAAGTCTTAATTTATATT
TTATTGAACTTTAACGTACTATGGGTCCGCTGGGGGAGGAGGGCTCTAAG
ATAAGGATGGGGGCTCTTAGCATTGCTCTATTAATGTAAAAGCCATTTCA
TTTAGTTACGGTAGGTGCTGTATAATTAATGTAATCGTAGTTGATTCGAT
TTTAGCACTAATTTACTTTATTTATATGTTGAATATTTCAAATTTATTCA
GTTAGAATTATCCATAGATAGGTAGATTCTGTGGGGTATAGTTAATTTTT
TCAACGTTAAATGAAAAGATATTAATCAAAACAAAGAAAGGTCTTTTAAA
A

Coding sequence (CDS) from alignment at scaffold_60:1617904..1620654-

>TCONS_00071478 ID=TCONS_00071478|Name=TCONS_00071478|organism=Clytia hemisphaerica|type=CDS|length=4626bp|location=Sequence derived from alignment at scaffold_60:1617904..1620654- (Clytia hemisphaerica)
GTATTACCCAACAGCGAATAGTTATGCAGCAGTAATGGGTGGAATGTTAT
GTGATGCGCTTGGTTGTGTTGGCTTCACCTGGATCGCCTCTCCAGCTTGC
ACTGAACTCGAAAGATTAACTATGGATTGGCTTGCAAAGATGTTTGGATT
ACCTGAAGTTTTTCAACACGCGGGCGAAGGGAATGGCGGTGGCGTCATTC
AAGGATCCACAAGCGAATCTACGCTAATTGCAATTCTAGCAGCAAAACAT
CGCAAGATGATCGAATATGATCATGATGAAGTGTTGGCTTCTAAGCTAGT
GGCGTACACATCAAGACAGTCGCACTCGTCTGTTGAAAAAGGTGTGCGTT
TGGCAGGGACAAAGTTAAGGTTGGTCGATACTGATGAGAGGTTTAGGATG
CGCGGGGATGAATTGAGGAAAGCGATCGAGGAAGATAAAGCAAAAGGTTT
GATCCCTTTCTTTGTCGGCGCGTCCGTTGGTACAACCAACGTTTGTGCGT
TTGACGCACTCGATGAGATAAGTGCTGTTTCAGGGGAGGAAAAAATGTGG
ATGCATATAGATGCTGCGTACGCAGGGGCAGCCATGATTTGTCCCGAGTT
TCGATATCTTGTGAAAGGGATCGAGAATACAGATTCTCTAGTTGTAAGTT
GCCATAAGTGGCTGATGGTGAATTTTGCTTGTGCCGCCATGTTTGTTCGG
GATTCACTGGATTTGATTAATCTGTTTGATATCAATCCACTGTATTTGAA
ACATGAATATGAAAATGAAATCTCAGACTTCAGACACTGGCAGATTCCTC
TTGGGAGGCGTTTTCGATCTTTGAAACTTTGGATGGTGCTTAAATCTTAT
GGAGTAAAAGGACTTCAAGAAAATATACGGTGTCAAATTCAACAAGCAAA
ATTTTTTGAAGAGATGGTTCGCAAAGATGCTAGATTTGAAGTGATTAATG
ATGTCTTGATGGGTCTTGTTTGTTTCAGATTAATTGGTGATAATGCACTG
AATGAAGATTTGAATAAGCGAGTCAACGAGGCACGAAAAATACACATGAC
ACCTGCAACTGTTGATGGACAGTTTGTTTTACGTTTCGTAGTAGCGTCTC
GATTAACCGAGGATAAAGATATCCAATTCGCCTGGGATGAGATAAAAGAC
CATGCTGGTATCCTATTGAACAATGAAGAGCCAAAGAAAAGAGGAGTTTG
AAATTCGACCAACAATTGATACCAATGATGATTTTCGAAAATTTGGAAAA
AAGATGGTAGACCTTATTGCAGATTACAACGAAAACGTTCCAAACATGTC
GGTACTACCGGATGTGAAGTCGGGATACCTTGTAAAACTATTGCCAGATG
AAGCGCCAATGGAACCGGAATCATGGGAAAGTGTTTGTGAAGATTTCGAG
AAAGCCATTGTTCCCGGTATCACGCCTTGGAATTCACCCAATTTCCACGC
CGAGTAAGACTTAAAGGGAAATATTCAAGTCATTTGATTTTTTGTTGGGC
AAATATGCGTCTTTTCAACAGGCTTTCGTGCTCAACTAAAAGGTATTACC
CAACAGCGAATAGTTATGCAGCAGTAATGGGTGGAATGTTATGTGATGCG
CTTGGTTGTGTTGGCTTCACCTGGATCGCCTCTCCAGCTTGCACTGAACT
CGAAAGATTAACTATGGATTGGCTTGCAAAGATGTTTGGATTACCTGAAG
TTTTTCAACACGCGGGCGAAGGGAATGGCGGTGGCGTCATTCAAGGATCC
ACAAGCGAATCTACGCTAATTGCAATTCTAGCAGCAAAACATCGCAAGAT
GATCGAATATGATCATGATGAAGTGTTGGCTTCTAAGCTAGTGGCGTACA
CATCAAGACAGTCGCACTCGTCTGTTGAAAAAGGTGTGCGTTTGGCAGGG
ACAAAGTTAAGGTTGGTCGATACTGATGAGAGGTTTAGGATGCGCGGGGA
TGAATTGAGGAAAGCGATCGAGGAAGATAAAGCAAAAGGTTTGATCCCTT
TCTTTGTCGGCGCGTCCGTTGGTACAACCAACGTTTGTGCGTTTGACGCA
CTCGATGAGATAAGTGCTGTTTCAGGGGAGGAAAAAATGTGGATGCATAT
AGATGCTGCGTACGCAGGGGCAGCCATGATTTGTCCCGAGTTTCGATATC
TTGTGAAAGGGATCGAGAATACAGATTCTCTAGTTGTAAGTTGCCATAAG
TGGCTGATGGTGAATTTTGCTTGTGCCGCCATGTTTGTTCGGGATTCACT
GGATTTGATTAATCTGTTTGATATCAATCCACTGTATTTGAAACATGAAT
ATGAAAATGAAATCTCAGACTTCAGACACTGGCAGATTCCTCTTGGGAGG
CGTTTTCGATCTTTGAAACTTTGGATGGTGCTTAAATCTTATGGAGTAAA
AGGACTTCAAGAAAATATACGGTGTCAAATTCAACAAGCAAAATTTTTTG
AAGAGATGGTTCGCAAAGATGCTAGATTTGAAGTGATTAATGATGTCTTG
ATGGGTCTTGTTTGTTTCAGATTAATTGGTGATAATGCACTGAATGAAGA
TTTGAATAAGCGAGTCAACGAGGCACGAAAAATACACATGACACCTGCAA
CTGTTGATGGACAGTTTGTTTTACGTTTCGTAGTAGCGTCTCGATTAACC
GAGGATAAAGATATCCAATTCGCCTGGGATGAGATAAAAGACCATGCTGG
TATCCTATTGAACAATGAAGAGCCAAAGAAAAGAGGAGTTTGAAATTCGA
CCAACAATTGATACCAATGATGATTTTCGAAAATTTGGAAAAAAGATGGT
AGACCTTATTGCAGATTACAACGAAAACGTTCCAAACATGTCGGTACTAC
CGGATGTGAAGTCGGGATACCTTGTAAAACTATTGCCAGATGAAGCGCCA
ATGGAACCGGAATCATGGGAAAGTGTTTGTGAAGATTTCGAGAAAGCCAT
TGTTCCCGGTATCACGCCTTGGAATTCACCCAATTTCCACGCCGAGTAAG
ACTTAAAGGGAAATATTCAAGTCATTTGATTTTTTGTTGGGCAAATATGC
GTCTTTTCAACAGGCTTTCGTGCTCAACTAAAAGGTATTACCCAACAGCG
AATAGTTATGCAGCAGTAATGGGTGGAATGTTATGTGATGCGCTTGGTTG
TGTTGGCTTCACCTGGATCGCCTCTCCAGCTTGCACTGAACTCGAAAGAT
TAACTATGGATTGGCTTGCAAAGATGTTTGGATTACCTGAAGTTTTTCAA
CACGCGGGCGAAGGGAATGGCGGTGGCGTCATTCAAGGATCCACAAGCGA
ATCTACGCTAATTGCAATTCTAGCAGCAAAACATCGCAAGATGATCGAAT
ATGATCATGATGAAGTGTTGGCTTCTAAGCTAGTGGCGTACACATCAAGA
CAGTCGCACTCGTCTGTTGAAAAAGGTGTGCGTTTGGCAGGGACAAAGTT
AAGGTTGGTCGATACTGATGAGAGGTTTAGGATGCGCGGGGATGAATTGA
GGAAAGCGATCGAGGAAGATAAAGCAAAAGGTTTGATCCCTTTCTTTGTC
GGCGCGTCCGTTGGTACAACCAACGTTTGTGCGTTTGACGCACTCGATGA
GATAAGTGCTGTTTCAGGGGAGGAAAAAATGTGGATGCATATAGATGCTG
CGTACGCAGGGGCAGCCATGATTTGTCCCGAGTTTCGATATCTTGTGAAA
GGGATCGAGAATACAGATTCTCTAGTTGTAAGTTGCCATAAGTGGCTGAT
GGTGAATTTTGCTTGTGCCGCCATGTTTGTTCGGGATTCACTGGATTTGA
TTAATCTGTTTGATATCAATCCACTGTATTTGAAACATGAATATGAAAAT
GAAATCTCAGACTTCAGACACTGGCAGATTCCTCTTGGGAGGCGTTTTCG
ATCTTTGAAACTTTGGATGGTGCTTAAATCTTATGGAGTAAAAGGACTTC
AAGAAAATATACGGTGTCAAATTCAACAAGCAAAATTTTTTGAAGAGATG
GTTCGCAAAGATGCTAGATTTGAAGTGATTAATGATGTCTTGATGGGTCT
TGTTTGTTTCAGATTAATTGGTGATAATGCACTGAATGAAGATTTGAATA
AGCGAGTCAACGAGGCACGAAAAATACACATGACACCTGCAACTGTTGAT
GGACAGTTTGTTTTACGTTTCGTAGTAGCGTCTCGATTAACCGAGGATAA
AGATATCCAATTCGCCTGGGATGAGATAAAAGACCATGCTGGTATCCTAT
TGAACAATGAAGAGCCAAAGAAAAGAGGAGTTTGAAATTCGACCAACAAT
TGATACCAATGATGATTTTCGAAAATTTGGAAAAAAGATGGTAGACCTTA
TTGCAGATTACAACGAAAACGTTCCAAACATGTCGGTACTACCGGATGTG
AAGTCGGGATACCTTGTAAAACTATTGCCAGATGAAGCGCCAATGGAACC
GGAATCATGGGAAAGTGTTTGTGAAGATTTCGAGAAAGCCATTGTTCCCG
GTATCACGCCTTGGAATTCACCCAATTTCCACGCCGAGTAAGACTTAAAG
GGAAATATTCAAGTCATTTGATTTTTTGTTGGGCAAATATGCGTCTTTTC
AACAGGCTTTCGTGCTCAACTAAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044379	XLOC_044379	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071478-protein	TCONS_00071478-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071478-exon-scaffold_60-1575043694:1620561..1620654	TCONS_00071478-exon-scaffold_60-1575043694:1620561..1620654	Clytia hemisphaerica	exon
TCONS_00071478-exon-scaffold_60-1575043694:1619626..1619874	TCONS_00071478-exon-scaffold_60-1575043694:1619626..1619874	Clytia hemisphaerica	exon
TCONS_00071478-exon-scaffold_60-1575043694:1617904..1619475	TCONS_00071478-exon-scaffold_60-1575043694:1617904..1619475	Clytia hemisphaerica	exon
TCONS_00071478-exon-scaffold_60-1510915933:1620561..1620654	TCONS_00071478-exon-scaffold_60-1510915933:1620561..1620654	Clytia hemisphaerica	exon
TCONS_00071478-exon-scaffold_60-1510915933:1619626..1619874	TCONS_00071478-exon-scaffold_60-1510915933:1619626..1619874	Clytia hemisphaerica	exon
TCONS_00071478-exon-scaffold_60-1510915933:1617904..1619475	TCONS_00071478-exon-scaffold_60-1510915933:1617904..1619475	Clytia hemisphaerica	exon
TCONS_00071478-exon-scaffold_60-1491911889:1620561..1620654	TCONS_00071478-exon-scaffold_60-1491911889:1620561..1620654	Clytia hemisphaerica	exon
TCONS_00071478-exon-scaffold_60-1491911889:1619626..1619874	TCONS_00071478-exon-scaffold_60-1491911889:1619626..1619874	Clytia hemisphaerica	exon
TCONS_00071478-exon-scaffold_60-1491911889:1617904..1619475	TCONS_00071478-exon-scaffold_60-1491911889:1617904..1619475	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:1617904..1620654 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.187163	0.223072	0.188369	0.115181	0.0280444	0	0	0.0250303	0.157718	0.0896068	0.213244	0.125037	0.0699105	0.0143633	0.0236172	0.0506897	2.18559	2.67828	0.0442129	0.0231328	6.25199	9.61828	1.07299	1.14721	1.89269	1.99268	0	0	0.0230818	0.0235167

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR010977	Aromatic_deC
IPR015421	PyrdxlP-dep_Trfase_major_sub1
IPR015422	PyrdxlP-dep_Trfase_sub2
IPR002129	PyrdxlP-dep_de-COase
IPR021115	Pyridoxal-P_BS
IPR015424	PyrdxlP-dep_Trfase

Vocabulary: **Biological Process**
Term	Definition
GO:0006520	cellular amino acid metabolic process
GO:0019752	carboxylic acid metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016831	carboxy-lyase activity
GO:0003824	catalytic activity
GO:0030170	pyridoxal phosphate binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019752	carboxylic acid metabolic process
biological_process	GO:0006520	cellular amino acid metabolic process
molecular_function	GO:0016831	carboxy-lyase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding

Blast

[Close]

BLAST of TCONS_00071478 vs. Swiss-Prot (Human)
Match: DDC (Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=2)

HSP 1 Score: 516.924 bits (1330), Expect = 2.201e-177
Identity = 242/475 (50.95%), Postives = 330/475 (69.47%), Query Frame = 3

Query:  120 DDFRKFGKKMVDLIADYNENVPNMSVLPDVKSGYLVKLLPDEAPMEPESWESVCEDFEKAIVPGITPWNSPNFHAYYPTANSYAAVMGGMLCDALGCVGFTWIASPACTELERLTMDWLAKMFGLPEVFQHAGEGNGGGVIQGSTSESTLIAILAAK----HRKMIEYDH--DEVLASKLVAYTSRQSHSSVEKGVRLAGTKLRLVDTDERFRMRGDELRKAIEEDKAKGLIPFFVGASVGTTNVCAFDALDEISAVSGEEKMWMHIDAAYAGAAMICPEFRYLVKGIENTDSLVVSCHKWLMVNFACAAMFVRDSLDLINLFDINPLYLKHEYENE--ISDFRHWQIPLGRRFRSLKLWMVLKSYGVKGLQENIRCQIQQAKFFEEMVRKDARFEVINDVLMGLVCFRLIGDNALNEDLNKRVNEARKIHMTPATVDGQFVLRFVVASRLTEDKDIQFAWDEIKDHAGILLNNE 1520
             +FR+ GK+MVD +A+Y E +    V PDV+ GYL  L+P  AP EP+++E +  D EK I+PG+T W+SP F AY+PTA+SY A++  MLC A+GC+GF+W ASPACTELE + MDWL KM  LP+ F +   G GGGVIQGS SE+TL+A+LAA+    HR            +  KLVAY+S Q+HSSVE+   + G KL+ + +D  F MR   L++A+E DKA GLIPFF+ A++GTT  C+FD L E+  +  +E +W+H+DAAYAG+A ICPEFR+L+ G+E  DS   + HKWL+VNF C+AM+V+   DL   F ++P YLKH +++   I+D+RHWQIPLGRRFRSLK+W V + YGVKGLQ  IR  +Q +  FE +VR+D RFE+  +V++GLVCFRL G N +NE L +R+N A+KIH+ P  +  +FVLRF + SR  E   +Q AW+ IK+ A  +L  E
Sbjct:    4 SEFRRRGKEMVDYMANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKELAADVLRAE 478

The following BLAST results are available for this feature:

BLAST of TCONS_00071478 vs. Swiss-Prot (Human)

BLAST of TCONS_00071478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DDC	2.201e-177	50.95	Aromatic-L-amino-acid decarboxylase OS=Homo sapien...	[more]

You are here

TCONS_00071478 (transcript) - C. hemisphaerica