TCONS_00071476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071476
Unique NameTCONS_00071476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1091

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071476 ID=TCONS_00071476|Name=TCONS_00071476|organism=Clytia hemisphaerica|type=transcript|length=1091bp
CGCTTTATATCTTACTCATCTCAACCGTCATGTTCACAATATCTCAAACC
AAAACAGTCACTATAACATATAATATCGAACGAACTCAAACTTATGACGT
CATTCTCAATGTGACGTCAGTTGACGCCTGCGCTGTATTCGTAAACACAG
AATATCATGACAACCAATGTCGTTGTATGAGGAATCATATGTTTTTTGTG
GTGGAAGATAAAGCAGGATGTTATCAAGCAAAACAAATAAACCCTCAATG
CAGCTTAATAGACCAGTCATCTTTCCGTGACCTTCTCGCACAAAGAAAAC
AACAATTTACAAAATCATTAACGAGCGGCGATACAACTTTGAATTGCACA
CAGAAAGTTATCAATTATAATTCAAATGGGAAATGGATGTACCTGGAGAT
GCCTTCTTCTATTCTGAAGGGAAGATGGAAGGCAAACTTTTAACCATCAC
TTATGAATGCAACAAAAATGATGACATGAACTGTCGTTTGCTCAAATTTC
CTGGACATGATCAATACATCCACACGTTCAATCCAACAACATCGACAGTA
GGAACGAACATAtccataaaaacaaaaacatcaacaaCTATAACaacgaa
agaaaagaaaataccaAGAAAATATCCagaatcaaaaaacaaaaattcgg
GAAGCCATCCTCCAAAAACAACGACCAATAATAAGACCAACGAACAGAAA
GAAACTCGTAAAAAATTGATGATCGCATTAGTCGTATGTGCTGTCTTACT
AGCTGGTGTTGTTATACTGGCTATCATTATGGCCAAGAGGTATCTGAAAA
TTAAGAAGATGACATCAGATTCAGAAGTTGCGCGTCTTCATTCACCTCCA
AGTGACGAAAACACCAAAACATCACCCAAGAAGTGAAATGTTAAGAAGCA
ATATgtaattattcaaaaatttttgttgttgtttttgttggtatCATCGC
AAAATGTAATGTAAATAGTTATTGAACCAATTcgttttattttttctgaa
tttcattCATACGTAAATACTTATTTGATAAGCAATTCGACTAAAACTGC
CTTGCATATACCAGACATCATAAATGTTCATGTTCATTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_60:1602482..1607332-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071476 ID=TCONS_00071476|Name=TCONS_00071476|organism=Clytia hemisphaerica|type=transcript|length=4851bp|location=Sequence derived from alignment at scaffold_60:1602482..1607332- (Clytia hemisphaerica)
CGCTTTATATCTTACTCATCTCAACCGTCATGTTCACAATATCTCAAACC
AAAACAGTCACTATAACATATAATATCGAACGAACTCAAACTTATGACGT
CATTCTCAATGTGACGTCAGTTGACGCCTGCGCTGTATTCGTAAACACAG
AATATCATGACAACCAATGTCGTTGTATGAGGAATCATATGTTTTTTGTG
GTGGAAGATAAAGCAGGATGTTATCAAGCAAAACAAATAAACCCTCGTAC
GGGAGTATTTTTTGTTTACTTTGGTCCTTATACCTTGACATTGTAATGGC
TTGTTCAAACAAAACCACAAAATTAAGCCTTCTTGAAAAAATAATCTACC
CTTAAATATAAAGAAAGTTTGCCGTCTTGAGCATCTCTTTAGATATCCTG
CAAATATAAATTTGCTATAAACTCAAGAATTAGTAAACAGCTCGATGTAA
ATAGAATAGATCCGAAGGCTTTTACAAAACCATCCAATCAGATCCATATT
TAAAGTCTATCAAGGTTACCATCGATTTCTAGAAAGATGAAAGTCAAAGC
CTCCCTATTTACAACTTTTTTGCCAATGACTGTATTTAACATATTTTTCT
ATTCTCATCATTAGAATGCAGCTTAATAGACCAGTCATCTTTCCGTGACC
TTCTCGCACAAAGAAAACAACAATTTACAAAATCATTAACGAGCGGCGAT
ACAACTTTGAATTGCACACAGAAAGTTATCAATTATAATTCAAATGGGAA
ATGGATGTACCTGGAGATGCCTTCTTCTATTCTGGTATGTGAACCTATTG
TTTTGAGAAAGTGTTATCTGTTATAATATTTTTAAAAATCATTTCAGCTG
TTTCAGCAAAAGAACAGAGATTAAGGTTGACAAAACTATGCTCACAGACG
GTTCTGTTTCCCTCCGAAACGAGATCAATTCCATTCTATTGGTTAGAAGT
GACGTAAAAATTGAATTTAACCAATAGAGTGGCTTCATTTCATTTTGGAC
CCGAAACGTGTGAATATGGTCTTATCTTAAGACATTTGAACCAAACAGAC
AAAAGTTAGATCATTTTGTTCTAGACAGAAGGGAAGATGGAAGGCAAACT
TTTAACCATCACTTATGAATGCAACAAAAATGATGACATGAACTGTCGTT
TGCTCAAATTTCCTGGACATGATCAATGTAAGTTCACTACTGATGCTCTT
TTGAATGTAAAAATTTTATTTTAATAAGATTTTTCTAATAATTTGATAAA
TGAATGATGGAAAAGTTCTTCCGCCGATGAGCTAAAATCATTATTCAGTT
CAGTTGGTATTTAATATGAATAAACCAGCCGAGGCTGGAAGGTCAGCCAA
TAGAGCTTAGCTAGATAGCTTTAATAAGTGGGTTAACAGATGTAAGAGAT
GCACTGAAACAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTGATCTGTAAAAACAACGCACGCTAAAAGTACCCAAAAAGTTAACCC
GATCGGAAGAAAGTTTAGAAATCAAAGTGAGATCGGAAAACCGGATTTTT
TTTTTTGCCGTCTTATGATGATGATGGAGGAACTGGAAGAAAATTTTACC
TATTTGAATGCTCAGCTTAGGCTGACCAATGAATGGAATTTCACTAGTAT
AAAGATAAATTGTCTACCCTTTATGCCGCACCTGAAAAAGTCACCCCAAT
AAATAATATGGCTATTCTTCTAAGAAACTTAAAACAAAATCAACCTCCAA
ATTCAAAAAATCTGAAAATTCTTAACCACCTGGAATCTAGGGGGAGCCCA
AGGCAAGATAACATTTGATGTAATAAAATTTCAATATTTTGATTATCTTG
CATTTGTAATCATAGACATCCACACGTTCAATCCAACAACATCGACAGTA
GGAACGAACATATCCATAAAAACAAAAACATCAACAACTATAACAACGAA
AGAAAAGAAAATACCAAGAAAATATCCAGAATCAAAAAACAAAAATTCGG
GAAGCCATCCTCCAAAAACAACGACCAATAATAAGACCAACGAACAGAAA
GAAACTCGTAAAAAATTGATGATCGCATTAGTCGTATGTGCTGTCTTACT
AGCTGGTGTTGTTATACTGGCTATCATTATGGCCAAGAGGTAAGCCATCT
TTGCTTTTCAATATAAGCAACTCCCAAACAACTCTTTCNGGAGGTAAGCC
ATATTTGCTTTTCAATATAAACAACTCTTTCATATTACAAAATGACATTA
GGCCCCGAATTTAGCTGCAGTCCTAATTACAATAGCAAGTTTATGTAAAT
GTGTTTTTGGACGGAAACGGTTAGCTTTTGATTTGTCTACATCCTGACTG
ACTGAGGACGACGGTAAATCAGCAATTTAAACGTTCTCGATTTTTCAGGT
CAGAACATCATTTTAAAATCGCGCTCCACCGTTCCCAAAAGTGAATGAAA
ATACATAAACTCGCTGTTGACAACTCTTTTACTACTGTACAGTATTAAAG
CCTATACACACAATACTAACGTAAACTGGTGAAGGTTTCAAATCCATCCC
TACATATTCTCATGGTTCTTCTGAAAACGTATTAAAGAAGACGTTGTTAA
ACTTACTGTGAATAACTTCAGTCATGATGAATGAACTTTTAATTAACAGT
TTTCTTCCTTCTCTTCACTATAGGTATCTGAAAATTAAGAAGATGGTAAG
AACAATTGATTTGCTTTATTTTGAGCAATTGAAATATTCTTTTGTATAAA
TGTAATAAACCAATAAACCAGAGTAAAATCAACTTGAAAAATCCTGTACC
ATAGTCACGAAAAGACAGTCGATAATACTTTTTAAAGGATACTAACTGCT
GTGGGTTTAAACCGATCGGAGATTGGTAAAGCCTTTTACCTGTTAGAACT
CAATTTTATCTGATTCTCGAGGCTGAAAAAGAAATAAAACATATAAGTGT
ACATAAATGTTATTCTTCTAGACATCAGATTCAGAAGTTGCGCGTCTTCA
TTCACCTCCAAGTGACGAAAACACCAAAACATCACCCAAGAAGTGAAATG
TTAAGAAGCAATATGTAATTATTCAAAAATTTTTGTTGTTGTTTTTGTTG
GTATCATCGCAAAATGTAATGTAAATAGTTATTGAACCAATTCGTTTTAT
TTTTTCTGAATTTCATTCATACGTAAATACTTATTTGATAAGCAATTCGA
CTAAAACTGCCTTGCATATACCAGACATCATAAATGTTCATGTTCATTTT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044378XLOC_044378Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071476-exon-scaffold_60-1575043694:1607087..1607332TCONS_00071476-exon-scaffold_60-1575043694:1607087..1607332Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1575043694:1606549..1606718TCONS_00071476-exon-scaffold_60-1575043694:1606549..1606718Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1575043694:1606156..1606254TCONS_00071476-exon-scaffold_60-1575043694:1606156..1606254Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1575043694:1603594..1603867TCONS_00071476-exon-scaffold_60-1575043694:1603594..1603867Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1575043694:1603038..1603059TCONS_00071476-exon-scaffold_60-1575043694:1603038..1603059Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1575043694:1602482..1602761TCONS_00071476-exon-scaffold_60-1575043694:1602482..1602761Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1510915933:1607087..1607332TCONS_00071476-exon-scaffold_60-1510915933:1607087..1607332Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1510915933:1606549..1606718TCONS_00071476-exon-scaffold_60-1510915933:1606549..1606718Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1510915933:1606156..1606254TCONS_00071476-exon-scaffold_60-1510915933:1606156..1606254Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1510915933:1603594..1603867TCONS_00071476-exon-scaffold_60-1510915933:1603594..1603867Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1510915933:1603038..1603059TCONS_00071476-exon-scaffold_60-1510915933:1603038..1603059Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1510915933:1602482..1602761TCONS_00071476-exon-scaffold_60-1510915933:1602482..1602761Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1491911889:1607087..1607332TCONS_00071476-exon-scaffold_60-1491911889:1607087..1607332Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1491911889:1606549..1606718TCONS_00071476-exon-scaffold_60-1491911889:1606549..1606718Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1491911889:1606156..1606254TCONS_00071476-exon-scaffold_60-1491911889:1606156..1606254Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1491911889:1603594..1603867TCONS_00071476-exon-scaffold_60-1491911889:1603594..1603867Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1491911889:1603038..1603059TCONS_00071476-exon-scaffold_60-1491911889:1603038..1603059Clytia hemisphaericaexon
TCONS_00071476-exon-scaffold_60-1491911889:1602482..1602761TCONS_00071476-exon-scaffold_60-1491911889:1602482..1602761Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1602482..1607332 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.780687	0	0.887147	0	0	0	0.370867	0.300426	0.305515	0.542364	0	0	0	0	0	0.227636	0	0	0	0.385433	0	0.235453	0.451401	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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