TCONS_00071442 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071442
Unique NameTCONS_00071442
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1182

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071442 ID=TCONS_00071442|Name=TCONS_00071442|organism=Clytia hemisphaerica|type=transcript|length=1182bp
TACAAATTGTAATATGATCCCATAGAAAATACTTTCATATTATTGCTTCT
AACATCATATTTTTTTTACAGAGCTTAAACTAAACACATGTAAAAtcgtt
aaaaaaaattcaaacacaCAGAAATAGGACTTGTGGAAAAATGTTGATTT
ACAAGATATGAAGGAAATGTATAAAAAACCTCCAATAAAAGTAGACATTA
AAGTGGTATTACTTGGAAGATATTTTTGTGGTAAAACATCACTCATTCAA
CGATTTATTTATGGCACGTTTGAAGATAGATACTCCAATacCATAGGAGC
TGCTTTCAGTGGCAAAACTATAACAGTGAATGGTAAATCTGTCGAAGTTG
CAATCTGGGATACAGTAGGAGATGAAAAATATGAATCATTGAGCCGAATG
TATTACAGAAACGCAAAAGCTGCTGTCCTTTGTTATGATCTGACAGATTC
AAAGAGTTGGGATCGAGCAAAATTTTGGGTGAATGAAGTCCGCAAAAACG
AAGAGGACTGTAAAATCTATCTATGCGGAACTAAACTTGATTTGATCGCC
AACCAAGAACGCGCGGTCGACTTTCGTGATGTTTCAAAATATGCTCAATC
AATAGGTGCAAAGGAATTTGAAACGTCTAGTAAATCTGGTGAAAATATTG
ATGAAGTGTTTCAAACGATTGTCAGTGATTACTTAGAACACAATAAGGAT
ATGCTAGAGGGACAAAATGAGGATATCACAATTCAACTTGCACCAACGAG
TAACGATGGTATACGGAATGCTTTTGCTCGTTTCCAACAAAAATGTTGCA
TGTAGTAGACATATGTGAAGTCAAATTGGCTTGGAAAGTAtcctcaacaa
aaatttcatcGTGTCATTTTTATGTGACATGTTAATTGTGGTAGAGGTCT
GGGGCGTCAAATAATTCATTTCACAATTTTAGAGGTGCATATACACCTTG
GTCATTTTTCGGTGGAGATTGTTAAGTTTAAAGCTTCTCTACGTCACTCT
TTCTGTCTTAAATTGTAGTCGTTTCATAGGGTTCAAAATTTGGAAGTATT
TGCATCCCCTTCATCCCCCTTTGAACATTACGGAATTACTTATTATAACG
TATTAACTTAGATTGAAAAGcacaaattatttattttgatagaaagtttt
ttagagaatgcatatattttataacaaaggta
Run BLAST on NCBI

transcript from alignment at scaffold_60:1411740..1418166-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071442 ID=TCONS_00071442|Name=TCONS_00071442|organism=Clytia hemisphaerica|type=transcript|length=6427bp|location=Sequence derived from alignment at scaffold_60:1411740..1418166- (Clytia hemisphaerica)
TACAAATTGTAATATGATCCCATAGAAAATACTTTCATATTATTGCTTCT
AACATCATATTTTTTTTACAGAGCTTAAACTAAACACATGTAAAATCGTT
AAAAAAAATTCAAACACACAGAAATAGGACTTGTGGAAAAATGTTGATTT
ACAAGATATGAAGGAAATGTATAAAAAACCTCCAATAAAAGTAGACATTA
AAGTGGTATTACTTGGAAGATATTTTTGTGGTAAAACATCACTCATTCAA
CGATTTATTTATGGCACGTTTGAAGATAGATACTCCAATGTAAGTTTGTG
AGATAATTCTTTCATACAGTGTTCAAAGTTTTTCCGTCTCAGACGGATTT
CCTTGTCAGCGAGGTACAAAAAGAGGCTTTTCCATCTCCAAATTGAACAA
AATTCAGTAAAACATGAAGAATCTGGCCTGATTTGTTGTTTCAAGTCCAT
TTCCGTCTGTGATGAAAACTTTGCTTTGAGTACTGTTCATATAATTTATA
TCAGTGCTCCTTTCTCAGCTTAAACATTATTTGATATCTGCAATCAAGTT
TACTTTCGATATAATCACATCAATCTTTTGATGCAACATTTCTTAGGGAT
AAAATGTTTTGCTATTTTATTTAATGCTGGATAAAGTGTGGTCGCCGTTA
AATATTTCATCATCCGTAATGTGTTCTGAGATTGATGACTTTTTCATGTT
TCATTGATTGTTTGATTGTATATTTGCGGAACCGTGTTGGATATAAAAGT
TTTACGGGTTTTGCTCAATCCCCCATGAATTGTTTTTGTTTTCCTGTCGT
GAATGAATTCCGGGGGGGCACTCGATTTCTAAACGACCGCATGCGCCGCC
AAAAATTGGCTTTCAAAATCGGACCCTTACAGTACAGCTCTTGAGCAGTG
AAGAGGTACCCGTACAGTGCATTTTTCCGAACGTACACTTTTACAGTGCA
TTTTGAGGGTCTCGTAAAACCTACCCTTAAGGGCGGCACATGCCGTAGGT
CGGACCATATGAGTGCCCCCGGGCAATTTTTTCATTTCCATCGACTTTTA
TAATCAGGATAACTTTACTTAAAACCTGTTTTTTTCTTCAGACCATAGGA
GCTGCTTTCAGTGGCAAAACTATAACAGTGAATGGTAAATCTGTCGAAGT
TGCAATCTGGGTATGAGAAATATTTTCCTCAATGATAGCTGGTACAACAG
TCTTTACCATTGAGCTTTCTAAGATTCTAAATACACATGAAAGGGAAAGC
CCTGTCAAGTTGAGTAAATCTATTTTAGCCACACTCACTCGTCGAATTTA
AAAGGCCCTTAATGAAAACTTCAATCTAAAGTATGGATTTCGGAACTTAG
GCTTAAATGTTCTTGTTTCTTTCCTAGGATACAGTAGGAGATGAAAAATA
TGAATCATTGAGCCGAATGTATTACAGAAACGCAAAAGCTGCTGTCCTTT
GTTATGGTATGGTAATATTTGGATGACAAACTCTCTCACTCGGAGCATTA
TTTTCCTTGAATCATTTGGGAGATCATATCTTTCTGCACAAAAGCAATAA
TCTTTAGTTAATCAAGTTAATTTGATTTGTGATAGCTCGGAGATTTTATA
CTCTTTATCATGTGGAGAAGTATTTCCTTAAAACTTCCCCCTTTCTGCAA
GAAATTCTCTTACCCCCCCTTTCTGCGATTTTCAAGACATCTCTACCCTC
TTTAGGTGTGTGGGTGTGTGAACTATGTGATTGTTCGCAACACTCCATTT
ACATGAATTGGTTAACAATTTTTCCTCTTTTAATTAATAGATCTGACAGA
TTCAAAGAGTTGGGATCGAGCAAAATTTTGGGTGAATGAAGTCCGCAAAA
ACGAAGAGGTTGCAATCTTAACCTAATTTAAAGTTTTAACAACAAAGCTG
ACGCGTATTTTTTCAACGTACACATAACTTTAGTTAAATCGTGGGCTGGT
GTTTTAATTCTAAATCACTCGTCTATAAAGTTAACGTAACAACTGAAGTT
TTGTATTTAGGATCTAAGATTATTGGATTCCATTATAAAATGGGCAATTC
CATTTCAAAAACTTAGAAATTTAGAATTCAGGTTAATTAGGTGACTTCGT
TGTGTAAATTCGATGAAATTATATTGTTTAAACAACACATTCCCGCAACG
TTTGATTGATTATTTGTATGTTTCCATTTATAGGACTGTAAAATCTATCT
ATGCGGAACTAAACTTGATTTGATCGCCAACCAAGAACGCGCGGTCGACT
TTCGTGATGTTTCAAAATATGCTCAATCAATAGGTGCAAAGGAATTTGAA
ACGTCTAGTAAATCTGGTGAAAATATTGGTATGAACTTCAANATGCAAAG
GAATTTGAAACGTCCAGTAAATCTGGTGAAAATATTGGTATGAACTTCAA
GGCTCGAAAAGTTTTTCCGTAAATTAAGCCTCTAAGAATAATTCCGGGGA
AAGATATGCTCTACTGTTGGTTGTGACTGATTTTCATGCTTTCGGAAAAA
AAATGTAAAGTTTTTACAAAAATGGAAGAAAGCAACAAAACTTTCCATAC
TACCTATCAAGATTGAGGTGTCCCTTAGAAATTAGGTTACAAACCCCCTA
AAGATTTAAGATGGATTGAACCCCTCCTAAGATTCAGTACACATTAGGTA
GACGGACATTTACTCTCGGGTGCCTAATAAACGTACATGAACTTTTTTTT
TTTTGTCAAATTTCCCGCCTGTACCCACTTTATTAGGACCTGTACATTTA
TTTATTTTGAGAAATTTTCCCGCCTGTATGTTTATTCCCTCCTGTACGTT
TATTCCCTCCTGTACGTTTATTTATTTTGACCCAATATCGCCCGATTCAT
ACTGGAAGAAAAAATTTAATTTTTGTTCAAGTAATACACGTCTTAATATG
TAATACAAAGGCCGTTAATTACATTCGAACGTAATGTGAGAGATTTCGAA
TATTACACGAGTAAATTCGAACGTTTTACTATAAGTTCGAGCGTTTGATT
TGAAAAATTGGTAGATTTTTCCGTAGATGTTTCCCTGTACGTTTATTTTA
GCCTGTACGTTTATTTATTTTAGCTCTGATTTCTCGCTTGTATGTTTATT
TTGGTATGTACGTTTATTAGGCACCCAAGATTAGGCACCTGTAGCAATTG
GTTTAGGAATAAAGTATTTTTAAAAAGAAAGTCAGAGAAAGGTGGTGCCA
AATTTTTCAGATTTTTGCTGTAATTTGCTCAGCCCCAGGACTCAACCATG
GGCGTTTAAGTATTCCAAGGGTGGAGGGTATTCCCTGAAATTCCAGAATA
TTTTGGTCTGCAACTATTTAAAGGATAATTTTAGGTCTAGTCCCTGCACC
TCTGAACAGGGGGAGTGGGTCTGGAGCTTCAGCGCAACCTTTTCGCGGAA
AACGTGAAAAGTGTATTTAAAATTATCTGAAATAATTTCGTATTTTTTTA
ATGATTTTTCATTTTTATTGATATTTTCATAGATGAAGTGTTTCAAACGA
TTGTCAGTGATTACTTAGAACACAATAAGGGTAAGTATGCTCGCTATTCA
TCGTACACCGAACCTACTATTAGGGGGTCAACCTTTAGGATCCGTGGGAC
GCAACCGCATGTGGTTGGTTTCAAAATAAATAGGATTTAGTGAGAATAGT
AAATAAAGACTGCTAACAATTTGGGTAGTTTCTTAAACCTTTGTGATCAT
ACTCTAACTAATCTCCTTACTACTCCTTTCAATTTTCAAGTAGAGGTTTT
ACGCACCCCTGTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAA
TAATTTTAAATCAAGTTATCAAATGTTTCACATTTTGTACATTATTCAAC
ATTTTTAGTCTGCTCTGTTTCAGTACATCTCTTACATCTGTTAACCCACT
TATTAAAGCGATCTAGCTAAGCTCTATTGGCTGACCTTCCAGCCTCGGCT
GGATAATTTCGTATTTTTTTAATGATTTTTCAATTTTATTGATATTTTCA
TAGATGAAGTGTTTCAAACGATTGTCAGTGATTACTTAGAACACAATAAG
GGTAAGTATGCTCGCTATTCATCGTTCACCGAACCTACTATTAGGGGGTC
AACCGTTAGGATCCGTGGGACGCAACCGCATGTAGTTAGTTTCAAAATAA
ATAGGATTTAGTGAGAATAGTAAATAAAGACTGCTGACAATTTGGGTAGT
TTCTTAAACCTTTGTGATCATACTCTAACTAATCTCCTTACTACTCCTTT
CAATTTTCAAGTAGAGGTTTTACACACCCCTGTCTCATAGCCCCGGTGGA
ACCTTTTCCCTCAGTGGGGTAAAAATTCCTATTGTAATTCCGATGGGGAT
AGAAATTCTTTAGTTCCAAGGTTGAAAATTCCAGTGAGCAGGGAATTTCG
AATGGGGATGAAATCAAAGTCAATTTCTCAATAGGGCTGAAATTCCAGGG
TACTTTCCCACCAGGGACGAAATATTTTCCAAATTTTTCAATGGGGCTGG
GGTCAAAGCGATTCTGTGAGACAGGGGTGTTTTTGCATTCTCTAGCACAA
CTTTAGGCAATTGTTAACAAATCAAACCAGCTTAAAGAAATTTTTACGAG
CTCTCACAGGAAATATAGCAACTTATTAAATATCTTTCTTTAGATATGCT
AGAGGGACAAAATGAGGATATCACAATTCAACTTGCACCAACGAGTAACG
ATGGTATACGGAATGCTTTTGCTCGTTTCCAACAAAAATGTTGCATGTAG
TAGACATATGTGAAGTCAAATTGGCTTGGAAAGTATCCTCAACAAAAATT
TCATCGTGTCATTTTTATGTGACATGTTAATTGTGGTAGAGGTCTGGGGC
GTCAAATAATTCATTTCACAATTTTAGAGGTGCATATACACCTTGGTCAT
TTTTCGGTGGAGATTGTTAAGTTTAAAGCTTCTCTACGTCACTCTTTCTG
TCTTAAATTGTAGTCGTTTCATAGGGTTCAAAATTTGGAAGTATTTGCAT
CCCCTTCATCCCCCTTTGAACATTACGGAATTACTTATTATAACGTATTA
ACTTAGATTGAAAAGCACAAATTATTTATTTTGATAGAAAGTTTTTTAGA
GAATGCATATATTTTATAACAAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044370XLOC_044370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071442-exon-scaffold_60-1575043694:1417878..1418166TCONS_00071442-exon-scaffold_60-1575043694:1417878..1418166Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1575043694:1417007..1417075TCONS_00071442-exon-scaffold_60-1575043694:1417007..1417075Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1575043694:1416711..1416789TCONS_00071442-exon-scaffold_60-1575043694:1416711..1416789Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1575043694:1416309..1416376TCONS_00071442-exon-scaffold_60-1575043694:1416309..1416376Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1575043694:1415839..1415983TCONS_00071442-exon-scaffold_60-1575043694:1415839..1415983Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1575043694:1412816..1412863TCONS_00071442-exon-scaffold_60-1575043694:1412816..1412863Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1575043694:1411740..1412223TCONS_00071442-exon-scaffold_60-1575043694:1411740..1412223Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1510915933:1417878..1418166TCONS_00071442-exon-scaffold_60-1510915933:1417878..1418166Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1510915933:1417007..1417075TCONS_00071442-exon-scaffold_60-1510915933:1417007..1417075Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1510915933:1416711..1416789TCONS_00071442-exon-scaffold_60-1510915933:1416711..1416789Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1510915933:1416309..1416376TCONS_00071442-exon-scaffold_60-1510915933:1416309..1416376Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1510915933:1415839..1415983TCONS_00071442-exon-scaffold_60-1510915933:1415839..1415983Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1510915933:1412816..1412863TCONS_00071442-exon-scaffold_60-1510915933:1412816..1412863Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1510915933:1411740..1412223TCONS_00071442-exon-scaffold_60-1510915933:1411740..1412223Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1491911889:1417878..1418166TCONS_00071442-exon-scaffold_60-1491911889:1417878..1418166Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1491911889:1417007..1417075TCONS_00071442-exon-scaffold_60-1491911889:1417007..1417075Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1491911889:1416711..1416789TCONS_00071442-exon-scaffold_60-1491911889:1416711..1416789Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1491911889:1416309..1416376TCONS_00071442-exon-scaffold_60-1491911889:1416309..1416376Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1491911889:1415839..1415983TCONS_00071442-exon-scaffold_60-1491911889:1415839..1415983Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1491911889:1412816..1412863TCONS_00071442-exon-scaffold_60-1491911889:1412816..1412863Clytia hemisphaericaexon
TCONS_00071442-exon-scaffold_60-1491911889:1411740..1412223TCONS_00071442-exon-scaffold_60-1491911889:1411740..1412223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1411740..1418166 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.4892	6.30546	2.1716	1.71831	9.63758	6.39179	10.7116	11.1911	6.97757	7.08814	5.11255	3.56796	6.0194	4.95916	5.42404	5.47774	4.42793	4.95734	6.72024	6.54053	3.11166	2.54122	5.65128	5.4117	3.62118	3.79083	3.52956	2.97322	6.90558	6.33133
Blast
[Close]
BLAST of TCONS_00071442 vs. Swiss-Prot (Human)
Match: RAB24 (Ras-related protein Rab-24 OS=Homo sapiens GN=RAB24 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.980e-54
Identity = 91/185 (49.19%), Postives = 127/185 (68.65%), Query Frame = 2 
Query:  209 LLGRYFCGKTSLIQRFIYGTF-EDRYSNTIGAAFSGKTITVNGKSVEVAIWDTVGDEKYESLSRMYYRNAKAAVLCYDLTDSKSWDRAKFWVNEVRKNEEDCKIYLCGTK--LDLIANQERAVDFRDVSKYAQSIGAKEFETSSKSGENIDEVFQTIVSDYLEHNKDMLEGQNEDITIQLAPTSN 754
            +LG+ + GKTSL++R+++  F    Y NTIGAAF  K ++V  ++V + IWDT G E+YE++SR+YYR AKAA++CYDLTDS S++RAKFWV E+R  EE C+IYLCGTK  L     + R VDF DV  YA +I A+ FETSSK+G+++DE+FQ +  DY+  +    +   ED  + L    N
Sbjct:   12 MLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAEDYV--SVAAFQVMTEDKGVDLGQKPN 194
The following BLAST results are available for this feature:
BLAST of TCONS_00071442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB246.980e-5449.19Ras-related protein Rab-24 OS=Homo sapiens GN=RAB2... [more]
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