TCONS_00071440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071440
Unique NameTCONS_00071440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071440 ID=TCONS_00071440|Name=TCONS_00071440|organism=Clytia hemisphaerica|type=transcript|length=577bp
ATGCAAAGGAATTTGAAACGTCCAGTAAATCTGGTGAAAATATTGATGAA
GTGTTTCAAACGATTGTCAGTGATTACTTAGAACACAATAAGGATATGCT
AGAGGGACAAAATGAGGATATCACAATTCAACTTGCACCAACGAGTAACG
ATGGTATACGGAATGCTTTTGCTCGTTTCCAACAAAAATGTTGCATGTAG
TAGACATATGTGAAGTCAAATTGGCTTGGAAAGTAtcctcaacaaaaatt
tcatcGTGTCATTTTTATGTGACATGTTAATTGTGGTAGAGGTCTGGGGC
GTCAAATAATTCATTTCACAATTTTAGAGGTGCATATACACCTTGGTCAT
TTTTCGGTGGAGATTGTTAAGTTTAAAGCTTCTCTACGTCACTCTTTCTG
TCTTAAATTGTAGTCGTTTCATAGGGTTCAAAATTTGGAAGTATTTGCAT
CCCCTTCATCCCCCTTTGAACATTACGGAATTACTTATTATAACGTATTA
ACTTAGATTGAAAAGcacaaattatttattttgatagaaagttttttaga
gaatgcatatattttataacaaaggta
Run BLAST on NCBI

transcript from alignment at scaffold_60:1411740..1415824-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071440 ID=TCONS_00071440|Name=TCONS_00071440|organism=Clytia hemisphaerica|type=transcript|length=4085bp|location=Sequence derived from alignment at scaffold_60:1411740..1415824- (Clytia hemisphaerica)
ATGCAAAGGAATTTGAAACGTCCAGTAAATCTGGTGAAAATATTGGTATG
AACTTCAAGGCTCGAAAAGTTTTTCCGTAAATTAAGCCTCTAAGAATAAT
TCCGGGGAAAGATATGCTCTACTGTTGGTTGTGACTGATTTTCATGCTTT
CGGAAAAAAAATGTAAAGTTTTTACAAAAATGGAAGAAAGCAACAAAACT
TTCCATACTACCTATCAAGATTGAGGTGTCCCTTAGAAATTAGGTTACAA
ACCCCCTAAAGATTTAAGATGGATTGAACCCCTCCTAAGATTCAGTACAC
ATTAGGTAGACGGACATTTACTCTCGGGTGCCTAATAAACGTACATGAAC
TTTTTTTTTTTTGTCAAATTTCCCGCCTGTACCCACTTTATTAGGACCTG
TACATTTATTTATTTTGAGAAATTTTCCCGCCTGTATGTTTATTCCCTCC
TGTACGTTTATTCCCTCCTGTACGTTTATTTATTTTGACCCAATATCGCC
CGATTCATACTGGAAGAAAAAATTTAATTTTTGTTCAAGTAATACACGTC
TTAATATGTAATACAAAGGCCGTTAATTACATTCGAACGTAATGTGAGAG
ATTTCGAATATTACACGAGTAAATTCGAACGTTTTACTATAAGTTCGAGC
GTTTGATTTGAAAAATTGGTAGATTTTTCCGTAGATGTTTCCCTGTACGT
TTATTTTAGCCTGTACGTTTATTTATTTTAGCTCTGATTTCTCGCTTGTA
TGTTTATTTTGGTATGTACGTTTATTAGGCACCCAAGATTAGGCACCTGT
AGCAATTGGTTTAGGAATAAAGTATTTTTAAAAAGAAAGTCAGAGAAAGG
TGGTGCCAAATTTTTCAGATTTTTGCTGTAATTTGCTCAGCCCCAGGACT
CAACCATGGGCGTTTAAGTATTCCAAGGGTGGAGGGTATTCCCTGAAATT
CCAGAATATTTTGGTCTGCAACTATTTAAAGGATAATTTTAGGTCTAGTC
CCTGCACCTCTGAACAGGGGGAGTGGGTCTGGAGCTTCAGCGCAACCTTT
TCGCGGAAAACGTGAAAAGTGTATTTAAAATTATCTGAAATAATTTCGTA
TTTTTTTAATGATTTTTCATTTTTATTGATATTTTCATAGATGAAGTGTT
TCAAACGATTGTCAGTGATTACTTAGAACACAATAAGGGTAAGTATGCTC
GCTATTCATCGTACACCGAACCTACTATTAGGGGGTCAACCTTTAGGATC
CGTGGGACGCAACCGCATGTGGTTGGTTTCAAAATAAATAGGATTTAGTG
AGAATAGTAAATAAAGACTGCTAACAATTTGGGTAGTTTCTTAAACCTTT
GTGATCATACTCTAACTAATCTCCTTACTACTCCTTTCAATTTTCAAGTA
GAGGTTTTACGCACCCCTGTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNTTTAAATAATTTTAAATCAAGTTATCAAATGTTTCACATTTTGTACAT
TATTCAACATTTTTAGTCTGCTCTGTTTCAGTACATCTCTTACATCTGTT
AACCCACTTATTAAAGCGATCTAGCTAAGCTCTATTGGCTGACCTTCCAG
CCTCGGCTGGATAATTTCGTATTTTTTTAATGATTTTTCAATTTTATTGA
TATTTTCATAGATGAAGTGTTTCAAACGATTGTCAGTGATTACTTAGAAC
ACAATAAGGGTAAGTATGCTCGCTATTCATCGTTCACCGAACCTACTATT
AGGGGGTCAACCGTTAGGATCCGTGGGACGCAACCGCATGTAGTTAGTTT
CAAAATAAATAGGATTTAGTGAGAATAGTAAATAAAGACTGCTGACAATT
TGGGTAGTTTCTTAAACCTTTGTGATCATACTCTAACTAATCTCCTTACT
ACTCCTTTCAATTTTCAAGTAGAGGTTTTACACACCCCTGTCTCATAGCC
CCGGTGGAACCTTTTCCCTCAGTGGGGTAAAAATTCCTATTGTAATTCCG
ATGGGGATAGAAATTCTTTAGTTCCAAGGTTGAAAATTCCAGTGAGCAGG
GAATTTCGAATGGGGATGAAATCAAAGTCAATTTCTCAATAGGGCTGAAA
TTCCAGGGTACTTTCCCACCAGGGACGAAATATTTTCCAAATTTTTCAAT
GGGGCTGGGGTCAAAGCGATTCTGTGAGACAGGGGTGTTTTTGCATTCTC
TAGCACAACTTTAGGCAATTGTTAACAAATCAAACCAGCTTAAAGAAATT
TTTACGAGCTCTCACAGGAAATATAGCAACTTATTAAATATCTTTCTTTA
GATATGCTAGAGGGACAAAATGAGGATATCACAATTCAACTTGCACCAAC
GAGTAACGATGGTATACGGAATGCTTTTGCTCGTTTCCAACAAAAATGTT
GCATGTAGTAGACATATGTGAAGTCAAATTGGCTTGGAAAGTATCCTCAA
CAAAAATTTCATCGTGTCATTTTTATGTGACATGTTAATTGTGGTAGAGG
TCTGGGGCGTCAAATAATTCATTTCACAATTTTAGAGGTGCATATACACC
TTGGTCATTTTTCGGTGGAGATTGTTAAGTTTAAAGCTTCTCTACGTCAC
TCTTTCTGTCTTAAATTGTAGTCGTTTCATAGGGTTCAAAATTTGGAAGT
ATTTGCATCCCCTTCATCCCCCTTTGAACATTACGGAATTACTTATTATA
ACGTATTAACTTAGATTGAAAAGCACAAATTATTTATTTTGATAGAAAGT
TTTTTAGAGAATGCATATATTTTATAACAAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044370XLOC_044370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071440-exon-scaffold_60-1575043694:1415780..1415824TCONS_00071440-exon-scaffold_60-1575043694:1415780..1415824Clytia hemisphaericaexon
TCONS_00071440-exon-scaffold_60-1575043694:1414637..1414684TCONS_00071440-exon-scaffold_60-1575043694:1414637..1414684Clytia hemisphaericaexon
TCONS_00071440-exon-scaffold_60-1575043694:1411740..1412223TCONS_00071440-exon-scaffold_60-1575043694:1411740..1412223Clytia hemisphaericaexon
TCONS_00071440-exon-scaffold_60-1510915933:1415780..1415824TCONS_00071440-exon-scaffold_60-1510915933:1415780..1415824Clytia hemisphaericaexon
TCONS_00071440-exon-scaffold_60-1510915933:1414637..1414684TCONS_00071440-exon-scaffold_60-1510915933:1414637..1414684Clytia hemisphaericaexon
TCONS_00071440-exon-scaffold_60-1510915933:1411740..1412223TCONS_00071440-exon-scaffold_60-1510915933:1411740..1412223Clytia hemisphaericaexon
TCONS_00071440-exon-scaffold_60-1491911889:1415780..1415824TCONS_00071440-exon-scaffold_60-1491911889:1415780..1415824Clytia hemisphaericaexon
TCONS_00071440-exon-scaffold_60-1491911889:1414637..1414684TCONS_00071440-exon-scaffold_60-1491911889:1414637..1414684Clytia hemisphaericaexon
TCONS_00071440-exon-scaffold_60-1491911889:1411740..1412223TCONS_00071440-exon-scaffold_60-1491911889:1411740..1412223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1411740..1415824 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.774102	0.908451	0.316456	0.262436	0	0	0	0	0.520751	0.478971	0.205385	0.421916	0.210048	0.105255	0.521451	0.438637	0.161518	0.986752	0.473449	0.294188	0.16176	0.782735	1.03068	1.97159	0	0	0.31785	0.603535	0.788235	0.648573
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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