TCONS_00071439 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071439
Unique Name	TCONS_00071439
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	577

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_60:1411740..1415824-

transcript sequence

>TCONS_00071439 ID=TCONS_00071439|Name=TCONS_00071439|organism=Clytia hemisphaerica|type=transcript|length=577bp
ATGCAAAGGAATTTGAAACGTCCAGTAAATCTGGTGAAAATATTGATGAA
GTGTTTCAAACGATTGTCAGTGATTACTTAGAACACAATAAGGATATGCT
AGAGGGACAAAATGAGGATATCACAATTCAACTTGCACCAACGAGTAACG
ATGGTATACGGAATGCTTTTGCTCGTTTCCAACAAAAATGTTGCATGTAG
TAGACATATGTGAAGTCAAATTGGCTTGGAAAGTAtcctcaacaaaaatt
tcatcGTGTCATTTTTATGTGACATGTTAATTGTGGTAGAGGTCTGGGGC
GTCAAATAATTCATTTCACAATTTTAGAGGTGCATATACACCTTGGTCAT
TTTTCGGTGGAGATTGTTAAGTTTAAAGCTTCTCTACGTCACTCTTTCTG
TCTTAAATTGTAGTCGTTTCATAGGGTTCAAAATTTGGAAGTATTTGCAT
CCCCTTCATCCCCCTTTGAACATTACGGAATTACTTATTATAACGTATTA
ACTTAGATTGAAAAGcacaaattatttattttgatagaaagttttttaga
gaatgcatatattttataacaaaggta

Run BLAST on NCBI

transcript from alignment at scaffold_60:1411740..1415824-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071439 ID=TCONS_00071439|Name=TCONS_00071439|organism=Clytia hemisphaerica|type=transcript|length=4085bp|location=Sequence derived from alignment at scaffold_60:1411740..1415824- (Clytia hemisphaerica)
ATGCAAAGGAATTTGAAACGTCCAGTAAATCTGGTGAAAATATTGGTATG
AACTTCAAGGCTCGAAAAGTTTTTCCGTAAATTAAGCCTCTAAGAATAAT
TCCGGGGAAAGATATGCTCTACTGTTGGTTGTGACTGATTTTCATGCTTT
CGGAAAAAAAATGTAAAGTTTTTACAAAAATGGAAGAAAGCAACAAAACT
TTCCATACTACCTATCAAGATTGAGGTGTCCCTTAGAAATTAGGTTACAA
ACCCCCTAAAGATTTAAGATGGATTGAACCCCTCCTAAGATTCAGTACAC
ATTAGGTAGACGGACATTTACTCTCGGGTGCCTAATAAACGTACATGAAC
TTTTTTTTTTTTGTCAAATTTCCCGCCTGTACCCACTTTATTAGGACCTG
TACATTTATTTATTTTGAGAAATTTTCCCGCCTGTATGTTTATTCCCTCC
TGTACGTTTATTCCCTCCTGTACGTTTATTTATTTTGACCCAATATCGCC
CGATTCATACTGGAAGAAAAAATTTAATTTTTGTTCAAGTAATACACGTC
TTAATATGTAATACAAAGGCCGTTAATTACATTCGAACGTAATGTGAGAG
ATTTCGAATATTACACGAGTAAATTCGAACGTTTTACTATAAGTTCGAGC
GTTTGATTTGAAAAATTGGTAGATTTTTCCGTAGATGTTTCCCTGTACGT
TTATTTTAGCCTGTACGTTTATTTATTTTAGCTCTGATTTCTCGCTTGTA
TGTTTATTTTGGTATGTACGTTTATTAGGCACCCAAGATTAGGCACCTGT
AGCAATTGGTTTAGGAATAAAGTATTTTTAAAAAGAAAGTCAGAGAAAGG
TGGTGCCAAATTTTTCAGATTTTTGCTGTAATTTGCTCAGCCCCAGGACT
CAACCATGGGCGTTTAAGTATTCCAAGGGTGGAGGGTATTCCCTGAAATT
CCAGAATATTTTGGTCTGCAACTATTTAAAGGATAATTTTAGGTCTAGTC
CCTGCACCTCTGAACAGGGGGAGTGGGTCTGGAGCTTCAGCGCAACCTTT
TCGCGGAAAACGTGAAAAGTGTATTTAAAATTATCTGAAATAATTTCGTA
TTTTTTTAATGATTTTTCATTTTTATTGATATTTTCATAGATGAAGTGTT
TCAAACGATTGTCAGTGATTACTTAGAACACAATAAGGGTAAGTATGCTC
GCTATTCATCGTACACCGAACCTACTATTAGGGGGTCAACCTTTAGGATC
CGTGGGACGCAACCGCATGTGGTTGGTTTCAAAATAAATAGGATTTAGTG
AGAATAGTAAATAAAGACTGCTAACAATTTGGGTAGTTTCTTAAACCTTT
GTGATCATACTCTAACTAATCTCCTTACTACTCCTTTCAATTTTCAAGTA
GAGGTTTTACGCACCCCTGTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTAAATAATTTTAAATCAAGTTATCAAATGTTTCACATTTTGTACAT
TATTCAACATTTTTAGTCTGCTCTGTTTCAGTACATCTCTTACATCTGTT
AACCCACTTATTAAAGCGATCTAGCTAAGCTCTATTGGCTGACCTTCCAG
CCTCGGCTGGATAATTTCGTATTTTTTTAATGATTTTTCAATTTTATTGA
TATTTTCATAGATGAAGTGTTTCAAACGATTGTCAGTGATTACTTAGAAC
ACAATAAGGGTAAGTATGCTCGCTATTCATCGTTCACCGAACCTACTATT
AGGGGGTCAACCGTTAGGATCCGTGGGACGCAACCGCATGTAGTTAGTTT
CAAAATAAATAGGATTTAGTGAGAATAGTAAATAAAGACTGCTGACAATT
TGGGTAGTTTCTTAAACCTTTGTGATCATACTCTAACTAATCTCCTTACT
ACTCCTTTCAATTTTCAAGTAGAGGTTTTACACACCCCTGTCTCATAGCC
CCGGTGGAACCTTTTCCCTCAGTGGGGTAAAAATTCCTATTGTAATTCCG
ATGGGGATAGAAATTCTTTAGTTCCAAGGTTGAAAATTCCAGTGAGCAGG
GAATTTCGAATGGGGATGAAATCAAAGTCAATTTCTCAATAGGGCTGAAA
TTCCAGGGTACTTTCCCACCAGGGACGAAATATTTTCCAAATTTTTCAAT
GGGGCTGGGGTCAAAGCGATTCTGTGAGACAGGGGTGTTTTTGCATTCTC
TAGCACAACTTTAGGCAATTGTTAACAAATCAAACCAGCTTAAAGAAATT
TTTACGAGCTCTCACAGGAAATATAGCAACTTATTAAATATCTTTCTTTA
GATATGCTAGAGGGACAAAATGAGGATATCACAATTCAACTTGCACCAAC
GAGTAACGATGGTATACGGAATGCTTTTGCTCGTTTCCAACAAAAATGTT
GCATGTAGTAGACATATGTGAAGTCAAATTGGCTTGGAAAGTATCCTCAA
CAAAAATTTCATCGTGTCATTTTTATGTGACATGTTAATTGTGGTAGAGG
TCTGGGGCGTCAAATAATTCATTTCACAATTTTAGAGGTGCATATACACC
TTGGTCATTTTTCGGTGGAGATTGTTAAGTTTAAAGCTTCTCTACGTCAC
TCTTTCTGTCTTAAATTGTAGTCGTTTCATAGGGTTCAAAATTTGGAAGT
ATTTGCATCCCCTTCATCCCCCTTTGAACATTACGGAATTACTTATTATA
ACGTATTAACTTAGATTGAAAAGCACAAATTATTTATTTTGATAGAAAGT
TTTTTAGAGAATGCATATATTTTATAACAAAGGTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044370	XLOC_044370	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071439-exon-scaffold_60-1575043694:1415780..1415824	TCONS_00071439-exon-scaffold_60-1575043694:1415780..1415824	Clytia hemisphaerica	exon
TCONS_00071439-exon-scaffold_60-1575043694:1412816..1412863	TCONS_00071439-exon-scaffold_60-1575043694:1412816..1412863	Clytia hemisphaerica	exon
TCONS_00071439-exon-scaffold_60-1575043694:1411740..1412223	TCONS_00071439-exon-scaffold_60-1575043694:1411740..1412223	Clytia hemisphaerica	exon
TCONS_00071439-exon-scaffold_60-1510915933:1415780..1415824	TCONS_00071439-exon-scaffold_60-1510915933:1415780..1415824	Clytia hemisphaerica	exon
TCONS_00071439-exon-scaffold_60-1510915933:1412816..1412863	TCONS_00071439-exon-scaffold_60-1510915933:1412816..1412863	Clytia hemisphaerica	exon
TCONS_00071439-exon-scaffold_60-1510915933:1411740..1412223	TCONS_00071439-exon-scaffold_60-1510915933:1411740..1412223	Clytia hemisphaerica	exon
TCONS_00071439-exon-scaffold_60-1491911889:1415780..1415824	TCONS_00071439-exon-scaffold_60-1491911889:1415780..1415824	Clytia hemisphaerica	exon
TCONS_00071439-exon-scaffold_60-1491911889:1412816..1412863	TCONS_00071439-exon-scaffold_60-1491911889:1412816..1412863	Clytia hemisphaerica	exon
TCONS_00071439-exon-scaffold_60-1491911889:1411740..1412223	TCONS_00071439-exon-scaffold_60-1491911889:1411740..1412223	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:1411740..1415824 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.774102	0.908451	0.316456	0.262436	0	0	0	0	0.520751	0.478971	0.205385	0.421916	0.210048	0.105255	0.521451	0.438637	0.161518	0.986752	0.473449	0.294188	0.16176	0.782735	1.03068	1.97159	0	0	0.31785	0.603535	0.788235	0.648573

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00071439 vs. Swiss-Prot (Human)

BLAST of TCONS_00071439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00071439 (transcript) - C. hemisphaerica