TCONS_00071434 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071434
Unique Name	TCONS_00071434
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1488

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_60:1367961..1375133-

transcript sequence

>TCONS_00071434 ID=TCONS_00071434|Name=TCONS_00071434|organism=Clytia hemisphaerica|type=transcript|length=1488bp
AAGCAGTCAAAGAATAGTTCCTCATTTCCGTCAAATCTCTTTGCTAGCTC
CTTGTTTTTCCTTTGGTTAGCTCCAGGAACGCTTTAATTCTATAAGATTT
TAATGATAAAGCTGTCAGTATATGTTGTTTTTATGCTATCGTTTTTTCTT
GACGAAAAGGGGCTTGGAACCGAGCTTGGTGAATACCGGAGGAGTGAAAT
ATAAAAAAGCTAAACCAAGTGCAAAAGTATTCAAACACCGAGAAGACAAA
GAGGAGACAAGTTATCAGTTGGAAAGGCAGAATGAAAATTGTGTTCATTT
TTGCTGCGTTTACAAcattgGCATTGTGTCAGAAGGATGGTAACAGCCAT
GATGATATTCTGACAATCAATCAAAAAATGTTCCAGAAAGCTGCTAAAGg
AACAAGTGGATTTTCGGGCAACAAACAAGTCTACAAAGAGGAAGATCTAC
TTGAAGGGGACATTGTTTTGACACCaaaattaaggaaatatttggATAAC
CAAAGAGACGGCAAAGAAGTTACAGCTTTTGATGCAGCCGTTTCAAAAGC
TTGGTCTGGCGCACGAATTCCATACACCTTCGCTAGAGGATTTTCATACA
CGTCTGCTGTTAGCCAAGCCATCACAGAATACAACGCCAAAACCTGTATT
CGTTTTGTACCAAGAAGATCTGAGAGAAATTATGTCGAATTCTTTCATGG
CGGCGGTTGTTATTCTATGATTGGACGCATCGGTGGTAAACAAAGAATTT
CATTGGGTAATGGATGTGGAACCAAAGGTGTCGCTATTCATGAAATGATG
CATGCTTTAGGGTTCTTTCACGAACAAAGCAGAAGAGATCGTGATACATA
CATTCAAATTATGTGGCAAAACATCCCTGGACGTGTCAGATACAACTTTG
AGAAATACAGACATGGGGAAGCACAGACTTTGGGACAGCCTTATGATAAG
AGATCTGTGATGCATTATGGGAACTACGCCTTTTCAACAAACCGACAAAA
AACAATTGTTTCGAAATCTAACCCAAATGAAGTTTTGGGACAACGACAAG
GCTTGAGTGTCATCGATATCCGACAGTTAAAGACGATGTACAAATGTGGC
GGTACCAAACCCGTCGTAACTCAAAGACCTACTACCACTAACTGTAAAGA
CAGATACAGCATGTGTACAACATTGGCAAGAGAAGGATTTTGTCGCGTCA
CTTTTACGTCATGGATGAAAAACAACTGCAAGAAATCGTGCAAGAAATGT
CCAACAGAACCAGTAAAACCTTCATTACCGAGATGTAAGCCACACAAGAA
TTCCAGATACTGTGCAAGTTGGGTACGTTCAGGCTATTGCACCAATCGTC
GGTATGCCAGCTTCATGACAGGCCACTGCTCTTCTTGTAAAAAGTGTATT
TAGGTCAAGACCACCAAAGACTTTTAGTCTTCAAGGTTATATGTATAAtt
gataaatatatatttttgtgaCATTTGATTGATCTaat

Run BLAST on NCBI

transcript from alignment at scaffold_60:1367961..1375133-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071434 ID=TCONS_00071434|Name=TCONS_00071434|organism=Clytia hemisphaerica|type=transcript|length=7173bp|location=Sequence derived from alignment at scaffold_60:1367961..1375133- (Clytia hemisphaerica)
AAGCAGTCAAAGAATAGTTCCTCATTTCCGTCAAATCTCTTTGCTAGCTC
CTTGTTTTTCCTTTGGTTAGCTCCAGGAACGCTTTAATTCTATAAGATTT
TAATGATAAAGCTGTCAGTATATGTTGTTTTTATGCTATCGTTTTTTCTT
GACGAAAAGGGGCTTGGAACCGAGCTTGGTGAATACCGGAGGAGTGAAAT
ATAAAAAAGCTAAACCAAGTGCAAAAGTATTCAAACACCGAGAAGACAAA
GAGGAGACAAGTTATCAGTTGGAAAGGCAGAATGAAAATTGTGTTCATTT
TTGCTGCGTTTACAAGTAAGTAAAGCTAAGTAATTTATTTAATAAATCGA
TAAAGCATAGGGAAAACTTTGTTCAATTCAAATGGAGTCGTTCAAGAGTG
ATCTGAGTCATGTGATCTTTTTTCCGGATACACGCGTTGAAAAAGCGAAC
ACAAGAAGTCAAGAAAATTTTGAGTTATAAAGAGTAAGCTTTTTAACCCA
TTTTTAACTGGAAGGGACTATCAAGTTAAAGAGACCCTACTATATATGTG
TTCATTACAACTCCGAATTTCTTGGGTACTTCAATATATTTGTTACAATT
TCTTTTTCATTTCAACATTTTTGAAGAAATTAATTATTGATTATTTTTTT
TCAAGCATTGGCATTGTGTCAGAAGGATGGTAACAGCCATGATGATATTC
TGACAATCAATCAAAAAATGTTCCAGAAAGCTGCTAAAGGTACGGGGGTA
ATAGGGTACTAGGCGAGCTGACGATAGGTATGTGCTTCCCAACTTTCGAC
CCTTGGACCCTTAGCTGGACTAAAAAGGAGGAAAAAAGGAACATTTTTTG
AGTTTTACGGCACCCTTTTTGGGACTAATTTGACCTAATTGATCAAATTT
CGATCTTTCAAGGGGCACAAAGATGAAATATTTTTTCCCACCCTTGGTTT
TTTGATTTTTTCAACCCCTACCTTACAGGCACTTAAAGGATCCAAAAAGG
CACCCTTAAGTGCGACACAAACCCGTACCCTTCTCTCACTTACCTAGGTA
CCCACTCCCGGGGTTGTAAAACATGAGATACAGATAGAGGATGAACCTCA
GATAGAAACATGCAAACTCAGATACAAAAAAGTTTTTAAAAAGCAACAGA
TTTAAGAATGTTTGTAGACTCCTTTTGAACTTACTTTTGACGAAAGAAAC
AAAAGAATCCATTGTTCGATTGTGTTTGGAAGTCAGTGCCTAACTGTACA
CTACAAGTTTATTTGAATGGATTGTTTTTCTTTTGTTAGGAACAAGTGGA
TTTTCGGGCAACAAACAAGTCTACAAAGGTAACTCAAGGAGATCAATTTT
TATTTTCGGTTGTATTTTAATATTGGGACAAAATGACTTTTTTTTATCTG
TCCTCGATCTCTTTAAAAACAAGTTTAGCAATAGATTTTCAGTAAAAGAG
AGGCGCAAAATAGCCTTAGATAAAAGGGAAACAGAAAGAAACAAGACGAC
TTGAAGTCGAAAATTTCGCCTAGAATTTGAACTGCATGGGAAAAACAATA
AGTAGAGATTGAAGCTAATCTGAAATCTACTTTACATCGAGCCTTGATGA
AACAATTTTACAAGAACAACGAGGCTTAAGATCGCTAAAAAAATTAAGAC
CGATTTAAGAAGAATTGTTGCTTAATTTTTAAAAGAACTCTTATAAAGTA
TATGCTTATAAAAGATAAATATGCTCATATTGCACGCCATCCCTTGTTTA
TTTTGTAAGAACTAATTACGGAAAGGTATATTACCGTCTATCCAAGAGTT
ATTGATTTGATTCTTATAAAGTAAATGCTTATAAGAAAATGAATATGGTC
ATATTGTGCGCCGTCCCTTGTTTACTTTGTAAGAACTAATTACCGAAAGG
TATGTCACCGTCTATCAAGAGTTATTGATTTGATTCTTATAAAGTAAATG
CTTATAAGAAAATGAATATGGTCATATTGTGCGCCGTCCCTTGTTTACTT
TGTAAGAACTAATTACCGAAAGGTATGTCACCGTCTATCAAGAGTTATTG
ATTTGATTCTTATAAAGTATATGCTTATAAGAAAAATAAATATGCTCATA
TTGTGCGCCATCCCTTGTTTATTTTGTAAGAACTAATTACCGAAAGGTAT
ATCACCGTCTATCAAGAGTTATTGATTTGATTCTTATAAAGCGAATGCTT
ACAAGAAAAATGAATATGGTCATATTGTGCGCCGTCCCTTGTTTACTTTG
TAAGAACTTATTACCGAAAGGTATGTCACCATCTATCAAGAGTTATTGAT
TTGATTCTTTTAAAGTATATGCTTATAAGAAAAATAAATATGCTCATATT
GTGCACCGTCCTTTGTTTAATTTGTAAGAACTAATTACCGAAAGGTATAT
CACCGTCTATCAAGAGTTATTGATTTGATTCTTATAAAGTATATGCTTAT
AAAAAATAAATATGCTCATTTTGTGCGTCATCCCTTGTTTACTTTGAAGA
ACTAATTACCGAAAGGTATATCACCGTCTATCAAGAGTTATTATGGTTTG
AATCTTATAAAGTATATGCTTATAAGAAAATAAAGAAAAAATCAAAACTG
TGAAGCTAAAGACACAAAGATATATGACGTAATCCAAAGAAAACCCGCGA
AAATTGTCCGTGGTTATACGAGCATGTAATTTGTAAATTAAATTTAGTGA
GTTCCTCCATCGTATCAAGTACTTTCGTTTTCTAATTTTTTTTCCGATGA
CACCAACACCGCGAAAGGCTATCGTAATACTTTCGCTAGGCGAAATTAAC
AAGGGGAAACTCTTTCGTGAATTGGTGGTTTTGTAGAATATACTCCAGGC
ATCTTTCACATATTTTACAGAGGAAGATCTACTTGAAGGGGACATTGTTT
TGACACCAAAATTAAGGAAATATTTGGATAACCAAAGAGACGGCAAAGAA
GTTACAGCTTTTGATGCAGCCGTTTCAAAAGCTTGGTCTGGCGCACGAAT
TCCATACACCTTCGCTAGAGGATTTTGTAAGTTGTTCTTCCTTCTTCTCA
ATTTGCACGTGAGTATGATTTAATCAGCATTGCTAACGTTTGTCTACCAA
TTGGTCCCACCATAGTATAAGAAAGCCGCGGCTGGAATGATAACATCTGA
ATTTCTGTTGTTCTATCTCTGTCGTATTTGATGACTATTTGTTGATCAAG
AAATAAGTAATGTAGCATCTTTAATGGTAAATTTTATTGGTTTGTCGTCA
ATACTTATTTCTCACTGCGTTTTAGACATTAATGGTATGCCCTTGTTAAT
ACACTTGCACTATGAAATCATTGTAAAGGAAAGATCAACAATAAGAAATT
TAAACAAGCACAAAATGACTGTACTGAAAGAACAAAAAATTAATAAAGTG
CCTCGAAATGCCTTCACAATATTTCAGTGAAATCTTTTTAGAAATCAATG
AAATAGTACATCAAGATAATACTGTGAAAATTTCAAGCCAGCACCTTCAA
AATTTATCATTCAAACTGACAGGAAAGTTGTGATCGTGAATATATTTCTT
ATAATTTTAATTTTGGCGAAAGACTATCGTTTCCACAAAATACCCCTAAA
ATATGTCTAAAATCAGTTCAAGTTTTCTATTGGGTACAGATTCAAAAATA
TCTAGCAATAAAAAACCTTTTGTGAAGGAAAATAAGAAAAAATTTCAAAA
ACTATCTACCAATAATAAACTGACAATCTTGATGTTCTTATAAAGCTCGG
AGACAGAGATAGAACAGCAATTAACTGAAAAGACAATGCAGTACATATTC
CAGCCGCGGCTTTCTTATACTATGGTCCCACTTTCTGATGAAAACAATAG
ACGATATCGGCTTAACGTGAAAACTCAGATTTGACCCCCGAATATTGCCC
ACAATGCTTTGCGCGCAAAAAAGTTCACGATGGAGTTTTCATGTGAAGCC
GATATCGTCTATTATGAACTTTTGAAATAAAAGTTGAAGACTAATGATGG
CTGTGTCACTGGCTGTTTTAAGACAATAGAGCAAGTACGTCGGAAACATG
CGAACGAGTGCAACGCTCGTTTAAAAACAATGAAATTACAATTACAAATC
TCTTCATCTGATAAGTTCGACAGGGTTTAAAACCGCCTTTGCTGAGTGAC
TAGATTAAGTTTGATCATTAATCCCACGAATCCCGTTTTAGCATACACGT
CTGCTGTTAGCCAAGCCATCACAGAATACAACGCCAAAACCTGTATTCGT
TTTGTACCAAGAAGATCTGAGAGAAATTATGTCGAATTCTTTCATGGCGG
CGGGTAAGCATGATTAAAGCGGTTTTTAATATTTCCCTTCAACCTGGATA
TTGGGTATTCAGGCAGGAGAGAATCTCAGATTAACTTTCTTTTTGAGGAA
ATCGAAATGGAAAATTTTGTACTATTTTTTAGTTGTTATTCTATGATTGG
ACGCATCGGTGGTAAACAAAGAATTTCATTGGGTAATGGATGTGGAACCA
AAGGTGTCGCTATTCATGAAATGATGCATGCTTTAGGTAGGAAAATTTGG
GTTTGAAATTTTGAAAATTTTAGATTAAAATATTAAATCAATGGACACAA
AAGTGGTTTCAAATCCCTTCAATAATATCAGTTTAACGTTGAACAGCTGG
GGAGGCAAAACACCCTCACTACAGCAGGTTCATAAAAGAATTTGCATTTT
TATTAAAAATATATTTCTAGGGTTCTTTCACGAACAAAGCAGAAGAGATC
GTGATACATACATTCAAATTATGTGGCAAAACATCCCTGGACGTAAGTTA
TAGCTATAACGATTCTGAATATTCGACACGACTCTGTCTCAACGTCTCGA
TTTGATGAGAACATTTTCGCGAGGAGCGAAAGAGCGATGGGAATGAGAAC
CAACTACACGTTTGTTTTAAAGAACATCCAAAATTTTTGCAGCCTTCGGA
TGTTCTTAACTATTTGAGTTTAAAGCCTAAAAATGTTCTTAACGTGTTCT
TATTATGACCATTTTGTGAGTATTTTTGACCATTTTCCTAAGAAATTGGT
TCATTTTGAGTCCACAAAGCCTTAAAATGTTTTCAGCTTGCTCTTAACAT
TTTGGCCATCAAAGTCTTATGTTCTTATATAGTTTGTTCTTATGAAGAAA
AAAACGTACCTCACCCAATCGCAATTATGGTAGGTGTGGGTTTTCGGATG
GCAATCTTAAAGAGATACTTCTTACNAGTACCTCTCCCAATGGCAATTAT
GGTAGGTGTAGGTTTTCAGATGGATGTGCAATCTTAAAGAGATACTTCTT
ACCAAGGACAGCTGTAGTAAATTTTTGTGGGTAGGGGCCAAATAACGGAT
GTGTGATACAAGTGAGTTTTGACTTGTTACATTAGAAGACAATAACATAC
ATAAGTTGAAATGGCGACTACAAGAGAGGGATATCTGAAAATTTTATTCT
AGCCTCTGGGTTATGAATTTAGCTGGTGTATCTGCCAATAGACTTGAATT
TTTTTGCGCAATGCATCATGGGTAATCATTCGGGGAGAATTCGGTAAAGT
CGATATCGTCTATTGCCAAACATCTCTTTTCTAAGAACTGGTCATTACAA
GACAGTCACTTCATGCCATTGTACCAATCAGATTAAAATTTTACTTTCAA
TATTTTGTTATTAGGTGTCAGATACAACTTTGAGAAATACAGACATGGGG
AAGCACAGACTTTGGGACAGCCTTATGATAAGAGATCTGTGATGCATTAT
GGGAAGTGAGTAATAAAATTAGCCTTATTGTTTGTTTCCTGTCTCAGAAA
CGGATATTGGTGAAAATGGACTTGCCATTTCTATATGAGACCATGTTCGC
ACGTGACGGTTCCGTTTTGCTCCGAAACGAAATGAAGCCATTCTATTGGT
TACATTCAAGTGATACGTCACTTCTAACCAATAGGATGGCTTCATTCTGT
TTCGGAGCGAAACGAAACAGTCATGTTCAAACATGGTCTAATATATTGAC
CGATTGGTTCGGTCGCTTTGATGAATTTTTTATAAAGACTTATAATTTGC
CAGTCACAAAAGTTACTTCTATCTTACTCTCTCAAGATTTTTCAAATTTA
AAATTTTTACTCTGTTTCAGCTACGCCTTTTCAACAAACCGACAAAAAAC
AATTGTTTCGAAATCTAACCCAAATGAAGTTTTGGGACAACGACAAGGCT
TGAGTGTCATCGATATCCGACAGTTAAAGACGATGTACAAATGTGGCGGT
ACCAAACCCGTCGTAACTCAAAGACCTACTACCACTAGTATGATGATTTT
TGATAGCACAACATTGTGTCAGATTTTTTCCATGTTTCTGTCTTTGTTCC
TATTTTGTCCACTCTAACCTGAGGATTGTTCTTGATTCATTTATTAGGCG
GTTTATAAGTCTCATTGTTATCCTTGTAACGTTGTTTTGATACACCCCTG
TCTCACAGCCCCGCTGGAACTTTTTTCCTCAGTGGGGATAACAATTCCAA
TTGAAATCCCAATGGGGATAAAAATTCTATTGTTCCAAGTTTAAAAAACC
CAGTGGCGATGGTTTTAGAGTGCAATTTTTAAACATGGAATTTCGAGTGG
GGACGACATCAAATTCAATTTCCCAGTGGGGCTGAAATTCAAGAGTATTT
TCCCACTGGGGACGAAATTTTTGCTTAATTTTCCAGTGGGGCTGGGGTCC
CAACAGGTCAGTGACACAGGGGTGTTTTGATAAACAAGAATATGAACTTA
GATGAACAAAGGATAAGGTCCACAATTTCTAGAGCTTTCAATTACAACGC
AGATTATTTCTCTAAAATCTTTCAGACTGTAAAGACAGATACAGCATGTG
TACAACATTGGCAAGAGAAGGATTTTGTCGCGTCACTTTTACGTCATGGA
TGAAAAACAACTGCAAGAAATCGTGCAAGAAATGTCCAACAGAACCAGTA
AAACCTTCATTACCGAGATGTAAGCCACACAAGAATTCCAGATACTGTGC
AAGTTGGGTACGTTCAGGCTATTGCACCAATCGTCGGTATGCCAGCTTCA
TGACAGGCCACTGCTCTTCTTGTAAAAAGTGTATTTAGGTCAAGACCACC
AAAGACTTTTAGTCTTCAAGGTTATATGTATAATTGATAAATATATATTT
TTGTGACATTTGATTGATCTAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044369	XLOC_044369	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:1367961..1375133 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.931456	0.928344	0.596735	0.260318	15.0333	13.4752	172.956	177.116	265.479	152.146	309.712	617.971	5.69099	3.74841	1.27781	2.43436	46.9431	50.1565	8.80408	8.95011	169.459	155.084	207.28	239.549	461.936	393.045	27.9443	57.8504	913.586	1011

Blast

[Close]

BLAST of TCONS_00071434 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 2.595e-38
Identity = 95/285 (33.33%), Postives = 129/285 (45.26%), Query Frame = 3

Query:  264 ISWKGRMKIVFIFAAFTTLALCQKDGNSHDDILTINQKMFQKAAKGTSGFSGNKQVYKEEDLLEGDIVLTPKLRKYLDNQRDGKEVTAFDAAVSKAWSGARIPYTFARGFSYTS--AVSQAITEYNAKTCIRFVPRRSERNYVEFFHGGGCYSMIG-RIGGKQRISLGNGCGTKGVAIHEMMHALGFFHEQSRRDRDTYIQIMWQNIPGRVRYNFEKYRHGEAQTLGQPYDKRSVMHYGNYAFSTNRQKTIVSK-SNPNEVLGQRQGLSVIDIRQLKTMYKCGGT 1106
            +SW   +  + + +   T      DG    DI  IN+ +         G           DL EGDI L    R  + N   G++           W    IPY         +   +  A   Y  KTCI F P   E NY+  F G GC+S +G R  GKQ +S+G  C       HE +HALGF+HEQSR DRD Y++IMW  I     +NF  Y    + +L  PYD  SVMHY   AF    + TIV++ S+  +V+GQR   S  D+ +L  +Y C  +
Sbjct:    6 LSWFLFLDALLVISGLATPENFDVDGGMDQDIFDINEGL---------GL----------DLFEGDIRLD---RAQIRNSIIGEKY---------RWPHT-IPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSS 258

The following BLAST results are available for this feature:

BLAST of TCONS_00071434 vs. Swiss-Prot (Human)

BLAST of TCONS_00071434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MEP1B	2.595e-38	33.33	Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=...	[more]

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TCONS_00071434 (transcript) - C. hemisphaerica