TCONS_00071425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071425
Unique NameTCONS_00071425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071425 ID=TCONS_00071425|Name=TCONS_00071425|organism=Clytia hemisphaerica|type=transcript|length=1453bp
CTGGCACTACTTGCTCTGTTCTTTCTCTGTGGGTCTATCTACTGGCTCTA
TTTTGAACTTTAAGAGgtAAAATCACACAAAAAGTATAGAGAAGTTTGAA
ATTTGTCTCTAAAAATGTGGTTTATGCAATTATTGAGCTATGTTGCAACA
atctttcattttatattttgtacctTATCTTTagCTGCTGGTCTTTACTA
CATAGCTGAGGCAGTTGAAGAGTATAGCAGTGTTGCAGCAAAAGTCATCA
AATATTCAATATACTTTACTACAAGTATTTTTGGAATGTTGTATCTCTTC
GAAGGCTTTCCATTATACTTGATATTGATTGGGTTGTTATCAAATGTGGA
TTATTATATACTACTCAACACATTCCCTTATATCTCTATAAGTCAACCAA
CGTTTGTTATTGGTTCTGTAATGGTTTTGGTAAATCACTATTTAGCTTTC
CAATATTTTGCAACTGTCTACTACTCATTCACTGAGaTTTTGGCATATTT
CACAATCTGTTTGTGGATAGTTCCTTTCTCTTTTTTCGTATCACTCTCAA
TAAACGAATGCGTGTTACCTACTACCATGCAAACCATGGATGCGCCATCT
CATCAGTTGGGTAGTAATGCACCACATGATCTGTTTCAAAGACCAAGGAG
ATCAGGTTTACTGGGTTTGTTTGATATGATTTCTGAAAAGAAAGATAAGA
TGAAAGAGGACTTGTTTGGACGAAGCAAAATGTTTTAATAGTGGGTTCAC
TTTTGACAATTCTTTAATAAATGCAATAGAGATACTATATTTTAATTGTT
TAAATGTTATTTATAAAGATACTATGAGAATGGATGATGGGGCTGGGATT
atttctttttgtctttgtaTTGAACTATAAATATACTTAACTTTGAGTCA
AATCAACAACTATATGCAGTTTCCAAAAAACTATTCAATATATCATTCTA
ACATAAGTAGTcgttctattcatgatatgcaccactgcaatgacttcaca
aaTTATGTAACtctattgtttttgttttcatccaatgcgtcactttttct
attgtttaagtgacgtattagttggaaaattttcaaagctctCAAAAGAC
ACCCAGtggtaaaaaatataaaaataaaaNCCCagtggtgtatatcatga
attgtcGAAATTATGTATTCCAGCTCCATAAACtgatcattttaaggctt
tttagacgaatttttcttaattattaaaactataaaatgtattttcatgt
ttttgtacCTCAAATACTTTGTGATAAAATTATGTGCTAGACGTATGTAt
gtaaatatttaaaattagTATACAGCCAAGAGAAGTAAAGAATCTTGTGT
TTGATTGTCTTTACTTTTCATCCAGCTTTCTCCTAAAGGGATTTACAATG
TTGAACTACGCAGGCTTACTagttatcttttttttaattctgtgTAATTA
Ctg
Run BLAST on NCBI

protein sequence of TCONS_00071425-protein

>TCONS_00071425-protein ID=TCONS_00071425-protein|Name=TCONS_00071425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MWFMQLLSYVATIFHFIFCTLSLAAGLYYIAEAVEEYSSVAAKVIKYSIY
FTTSIFGMLYLFEGFPLYLILIGLLSNVDYYILLNTFPYISISQPTFVIG
SVMVLVNHYLAFQYFATVYYSFTEILAYFTICLWIVPFSFFVSLSINECV
LPTTMQTMDAPSHQLGSNAPHDLFQRPRRSGLLGLFDMISEKKDKMKEDL
FGRSKMF
Run BLAST on NCBI

transcript from alignment at scaffold_60:1336049..1346025-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071425 ID=TCONS_00071425|Name=TCONS_00071425|organism=Clytia hemisphaerica|type=transcript|length=9977bp|location=Sequence derived from alignment at scaffold_60:1336049..1346025- (Clytia hemisphaerica)
CTGGCACTACTTGCTCTGTTCTTTCTCTGTGGGTCTATCTACTGGCTCTA
TTTTGAACTTTAAGAGGTAATGAAGTTTTTGATTACTTTAGTAGGAATTG
AATAGTGTTTGAGGCTTTTCTTCATACCTATAAAGGTCAGTCAGGCACAT
CCTGGCGCAAATGAACGGGGTGAGAATCATGCATATCTTAGACCCCCAAC
ATTTTTTAAGTCAGAATTCATTGCCAGTAATGCGACAGCGTGGTTTGAAA
GCTTGCTTGTGGTTGTTGTAGGTCTGGTTATTTCTGAATATAAACATTAA
CGACCCTCGACATGGCCCGAGAATTCTCGGGCCTCTTCGGGCCATGTTCG
GGCCGAGAGACTCTATCAATTCTTTTGGCCCGAACATGACCCGAGTCATT
CGGGCCATGTTCGGGCCATGTCAGGAGATTCCATATTTAAATTGATTCAG
CATGTCCAGTCAAACAAAATAGTACAAAATAAGATTTGTCTGTTTTGTTT
ATTATATCGCTCAAAAAAACTTTACGAGCTTACCGTGGACACAATGAAGT
ATAAGTAGCAACTCCAGAAGATTTTTCAGGTTTTAATTTTTTTTTCAAAA
TCTATCCTATCTTGTAGAGCTTTGAAAAAGAAAGAAAATGAGGGGTCATA
GGCCTCCAGAGGATTAGTGGTTGTAAAGATATTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTCAAATTTTAGTGTCAAAAATTTGACTAAAAA
TGTCAAAAAAAAGGTTAGGAAAATAGCTTGGAAAAATTCGAAAAATGTGT
CAAAAAAGAAAAAAAAGAAATTTCCCAGTCATGCTTCTTAAATTTTGCAT
ATCTCTTTTTCTAGTGTAGCTAGCCTAGAGACCTCATATTTGGAGGGAGA
ATTCTTTGATGGTGTTACAATATTATTTTATAAAAATATTTGTAAAATAT
TTAGTACTGTATATTTATCAAAATAACGAAAGATATATCTTTTTTTGAAA
AAAGAAGACATTACATTGTTTTATTTTTGTTTTTGAAGAAAATAGCTTGG
AAAAGGTTGAAATGAGTCCAAAAAGGTGGTAGGACCCATTTTCAAGGGGC
CTCTGGAAATGGAGGAACAAAAACTTATGAGTAAAGAATAAGTTTTTCTG
AAAGGAGAAACCCCAAATGAAAAGAAAATCCATTTCAGCAGAAATAAAAA
CTTTTTTTTGGGACATTCCCATGCTAAAGAAGCAAAAAAGTTAAAAAAAC
TACATGAAAATGAAAGAACTAGAATTAGTGATTGTGATTTTTGAATTCCT
CACCCTTTTTCTGATAAACATACAAAGTTTCAGCCTCCAAATACATTTTC
CTCCGTTTCCAGACACCTTTGTTCTTCGATAGTTGCTAATTTTTTTCTCC
CGTCGGCAAATAATTTTCAAAATATTGCAAAACGTTCGGCATTTTACCAA
TTTGCCGTCTAGCCCGTGTCCACAGTGTTATATACCGCTAGAAAGCTAAG
ATCACGGGCTTTCATTTAGTAAAAACCGGAACGCTTTAGCATTCATAGAA
AAGAAGTTCCAAGGGTTCAAAGTTCAAGGAAAAATGAAACATCTGGTTTG
ACGTCAACGAAAGTTGCATGACTTCTGGAGTCGCTAGTATAAGCCCGAAG
GGCTAGAAGTCAATCTCTTTGGTAGGATTTGAAGCCAACAAATCCTACCA
AAGTTGCGCAGCCTTGAGCGGCTCGCCTGGTTTTTACACAAATGACAGAT
TGAAACTAAAATTTACCGCTAAATTTCGAAAAAAAATATAAACAAAGGGA
TCGCTAGATTCAATCTGTCGTCAAAAATGCGGCGCATTTTTTAAGGCTTC
ACTTTTTCTTGCCTGAGAAAGGTTAGAGATTGAACTCTAGCCCTTCGGGC
TTTTTAAAACTCAATGTGTGGACACGCTTGAGTTTAAAACCAGGACCAGT
TTACTAGCAAATATTTCCACCCTAAGTATATTTATAACTATGTTTTCATA
CCAAATAAGACATTTAATATTTATATGAATTTACAACACTCATATATTTA
AAATATAATAACTAAGAGAAACCAAGTTTTTCTCAAAGAAAATGTTAAAA
AAATTCAGTCCTGAAATTACACGCCTGTTTAAATCATGTTTTAAAAAATT
GGCCCGAGTGTGGCCCGTGCGTGGCCCGCGTGTGGCCCGTGCGTGGCCCG
CGTGTGGCCCGAACACTNAGAAAATGTTAAAAAAATTCAGTCCTGAAATT
ACACGCCTGTTTAAATCATGTTTTTAAAAATTGGCCCGAGTGTGGCCCGT
GCCAGGCCCGAACACTGCCCGAATTCTCGGGCCAGCTCGGGCCATACTCG
GGCTTTACGCGAATTCCAATAAAAGTTTTGGCCCGAGAATTCTCGGGCCA
TGTCGAGGATCGTAAACATTACTGCAGCTAGAATATTTTCTTTATTTTGA
CAAACAAAAGGTTCAAGCAAGGTTTGTTTACTTTTTATTTTTACTGCATT
TCTCTGTCTCATTCTGTTGTAGTAGGCAATTGAAAACTCCTGATTTTTTG
TTTTTGTCAGTGCTTGCTTGGCAGCCATTTTGAATTTTTTTTTTTCGACG
TCTGTACTCGGCAATTTTGTGACCTCTACAGTTACGTTACAGAATCAACG
ATTTTGCCTGAGGGGAACAGCTGTGTCTTCAACAAAAAACTTTCGAATTT
TTTATCGGCATTGGGCCGATAAGCTTTGGTGAAGGCTTCTTCATAAAAGC
GAAAGACATGTATCTATTTTTCAGATCCTGCATGCGGGAATAGTGTCAGG
ACCTGCAGGCGACCTGGTAGGGTTGGGTATGGGTGTGGTTTGGGTGTGGT
TACATATCAGATTGGCTAGGAATTTGGTTATTATCAGTTTGGGTTAGGGT
TGGAGCTCGAAAAAAGCACTCTTTTGTGATTTTCTCTTAATACAGTCCGG
TCTGCAGTTTGTACAATATATAAATAGCCATCAGAAACGCTCTTTTGGCA
TGAATCCGTGGCGCAGTGGATAAGGCATTGGGTTTCAAAACATCGGAACT
TTGCATTTAGTGGGTTCGAATCCCACCGGTGGCGATCTGTCGGTAAGTCA
TTCAGTACGTTAGAAAACATAGTAAATAACTCACAAAGAAACAGAAAGTC
AGAAAAACTACGAACAAGAGACTGGAAAGAACGAAATAAGTCCAGATCTG
TCTTTCGTCTTTACGAAGAAGCCACGACCATAAGCTTCAGACCCCCTCCC
CACTTGCTCTTACTGGCCAAAATTTTTCAAATCCAACTTTTACATCTTCG
AAAACACAATTTCCTCCAATCTTGTCCGCCACCACCTTCCCACCCGTCAA
TTTTTGTCTATTTGTGCACCAACATTGAGTTTGTTCATTACCCGCATTGA
TATTGTTAATCAAAACGAAAGTTAAAATGACGGGATGAAGTCGCAACATT
TAGAAGGAAAAGGCAGCGCGCTGGCCAAAGAAAAAAGGGTTTTTTATCAA
AGCTGGTTCAAAACTGTACTTTTAAAGCTGCGAATTTGCGCGCAAAGGTG
AAAGCACNAGTTCAAAACTGTACTTTTAAAGTTGCGAATTTGCGCGCAAA
GGTGAAAGCAATTGAAATCATATGCTTTCAGTGGAGTTTGTGGACGAAAT
CAGAAAGAAATTGGCTGAAAGGATTTTCGTCTCAATACTTGTTTTTTTAT
CGGTATGTAGTTGGGCCCCCCCACCCCCTTATCAGCCCAATGCTGATAAA
AAATTCGAAAGTTTTTTGTGGAAGATCCCTTGGTCCAGTTCCCTGGAAAG
GGTATGATTACACTTCCAAATGACTTTTCTTTACAATAACATTTGTCTTC
TCACAAATCCAAAAAAATAAGCTATAAAAACAACATGGGGTCAACTTTTT
TTACAACAAACCGTCAGATCAAACTTTATAAAGATCAACCATGTTAATGT
CACTTGTTTTTGTGATATTTGGATAATATTAAAACCTTTTTGCATATATT
TGGTTGTTCAAAACCATTTCCCTTTCCTGCAGCAGGCTTTAAAGTTGATG
TTGACCCCCGGTTTTTTTTTTGCGCGGTAATCTAGAAAGGCCTTTAGCAG
TTAGTCACACTAGGAAATCTAGCTTTCAGAAAAAACAACATCAGTCATCT
ACAGGATGTATTTGCACAACAAAGATGAGAGTTACCTGAATCAAGTTTGC
AAGACAATTAATTAAAACTTGAAAGTTTGAAACAAAATAAAACGTGCAGC
AGCCAAAATCAACCAACCAAAATTTCTCATTCAATTCCAGAGACAGCGCT
TCGATTTTTAAGGCCTGGTTTATACGCTAAAGTAAAAATAATTCCGCATA
ATGTAAATGGGTTATTATTTGAGGTCCGGCAAAATTTCCGGGAAACAGCC
TATCCGGTGGTGCGCGGATCTAGGTGGGTTCCGCCTCCCCCGTAGATCTT
TAAAGTTTAGTAAATTCGACCACACATACAGTAATCAATATTTTGATTTT
TTAAGTGGGGATTTCTGCTCAGAGCCAAAATATGGTTTGTCAGTCAAGAA
CACCTTCAAATTAGCCTATAATAGGCTGATTAGCCTATCATAGGCTTTTT
AGACTATTTTATATAGGCTATTTAGCCAAAAATTGATAAAAACCTAGATT
TCTGACGAAATATAAATAGTTGCGTCTATTTTTCACCATTACTTCATTGC
CCAAAGCCAAAAGAATCTTTTTCACTTAAACTGATATAACATTCAATTTT
GGAAACAAAAATATAGTAAATTTATTATCCATTGGCTACAGTAACTAACC
GATTATAGGCTAATTTTCTGATAATGAAGTTCTGCTGAATCGACACAAAG
CCCGATTTTCTTACCCTGCGCATGCACACGCATGCGCAGTACCAAAAAGT
GGAATATTTTCTAAACCAAAATTGACCCAAAGTCAAAATTTGTCATGAGC
ATTTCTCTGACAATAAGAAACCATGTATTCCTTAGAGAAGACGCGACTAT
ATATATTTTGTCAGAAATCGAGGTTTTTATCGATTTTCGGCTAAATAGCC
TATATGAAATAGTCTAAATAGCCTATGATAGGCTAATCAGCCTATGATAG
GCTAATTTGAAGGTGTTCTTGACTGTTTGTATGGGATCGAGCTCGGTACA
GCTGTGCCGACCCCGTCAGCACCTTGGACTGAATACCTCACGTGTGTGTT
GGTTTGAGAACGCAAAACACGAACGCGAACTACCCATGTCTAAACTTTTC
AATATATCTCCAGAACTAACAGATTTTTTGAAATTCTGTAAAAAGGTTCG
AGTTATATAGCCCAGAAATCAATTGTCCCAAGATTTGACCAATCGTCCAG
AATCGTCCCAAGTTAGAGCAGTTGACGGGACATAAATTTGTCAATGTTGA
TTCAAGTCCTGCTCAATGTTAAAGAAAATAGTTAGTAACTTGTTAATTTT
ATTGTGAAATTTTGGAATATACAAGCAGAAGAGAATCAAAATTTATTTCC
CAACTAGATTACATTATTGCTAAAATACGGGTTGTTATAAAAATCAGGGT
AGCCTATTTATTTAGCTGTACTTTTCACCATAAAAATGGTCTGGTCTGTA
ATTTTTCAAAATGTTAGAGGAAGGAAGACAAGATGGTGACCGCACTCAGT
AAACAGAAGTAGATTTTTACAAAAATGACTACAGTTACAACTAAAGTTAC
GTAAAATTTAAACCTGATTTCTTTAATTATGACTGTTAAAAGGTTCTAAC
ATTGTATTTTAACAAATTAAAACACTAGCCTTCAAATATTTGGGCAAAAA
AGGGGTACCCCACAGCCTAGCTCAATTGGAGTAGCTTTTTAGACCAACCC
CTAAAATATTGTAAACTTTCTGATTTTCATGAAAAATATTTTGTGAGGGC
AAGTACACCTAATCTCAACAAGAAGAGAATCTTTGCATTTTTGATTATCA
GGAAATCAGGGAAAACAGATCACAATGTGGCTAGAGAAAGCACAAAATTT
GTTTTTTGTATTAAGGTTTATTACTTGTGTTTTGAAACTAGCAAAAGTTG
TTTGGAAGGAAAGAGTAACACAGGGCATCAGGTGGATTCTGACAGGACAG
GATTAAAACCATTTTTCTTTATTTTAGGTAAAATCACACAAAAAGTATAG
AGAAGTTTGAAATTTGTCTCTAAAAATGTGGTTTATGCAATTATTGAGCT
ATGTTGCAACAATCTTTCATTTTATATTTTGTACCTTATCTTTAGGTAAG
TTTTTATTTTTGGACTGAGCCATTCAAATAGGCTTTTTTTTAATATACCA
AGTTAGCATGAGTGGCTAGCATTGGGACTACCCTATCCTATGTTTTGAAC
TCTGTTACTCACTGATAGAAAAGATCAGGATAACTGACAGAAGAATAGCC
TATGGTACTCAGTAATTATTATCACTTATTACACAAAGATTCATAATTGC
TTTTAAAATCCCAGTGTACATCAGTAACACTTAACAAAAAAACTATAAAT
TGTTTTATTAATTATTAAATAATGGTTTCAATTGATTAAATTGTTTTGAT
TTATTCCAAACATTAATTCCAATTATTTAAGAAATCATGGAAATTAAAGA
TTGAATTTGAAGCACTTTTTTATTGTGTTTGAATTTGTGTTGAAGGACAG
ACAGTTGCCAATTCCAAATAAATTCACAAATGTTTTTTTCTATTGAATTT
CCTAATACATCTCATTTTAGCTGCTGGTCTTTACTACATAGCTGAGGCAG
TTGAAGAGTATAGCAGTGTTGCAGCAAAAGTCATCAAATATTCAATATAC
GTAAGTTCTATATTATCAGTCGAGAATACTGTAGAGATAAATTTATTTAT
TTATCCATATAGATTTATCTCTATTCTTGACTGATATACTACTCTACAAA
TATGGTATAGAGCAATAGACGATATCAGATTTAGATAAATGCAATGCATT
CTGGTTTCTAGGGACTCTCAAAGGAATTATAATATATTATAATTGATCTA
TTATAATATTCCTTTGAGAGTCCCTAGAAACCAGAATGCATTGCATTTAT
CTAAATCTGATAACGTCTATTTTGTTGAAATTGCAGTCAGATTTGCAACT
AAAGCTCTTAAATTAAGTGGATATTGTAATTTATGTATCCAATTGGTCAT
AATGTGGTCAAAATAAGACAAGCATTTTGTACTAAATATGCCTCAAAAAT
TAACTCAGGATTTGTCGACTATAGCTTCATTATCATACGGGGATACAGTC
ATGATGATTACTGGTAATTAATAAGAATTAAGAACATTTGAAGAATATTT
TTGATTTGTATTAACATTTTTCTCCTGCTTTTTGTTTTGTTCCAGTTTAC
TACAAGTATTTTTGGAATGTTGTATCTCTTCGAAGGCTTTCCATTATACT
TGATATTGATTGGGTTGTTATCAAATGTGGATTATTATATACTACTCAAC
ACATTCCCTTATATCTCTATAAGTCAACCAACGTTTGTTATTGGTTCTGG
TAAGTTTGTTTTGTATTCTAAAATTAAAGCATTGTATTTGTCTGGGAGTT
TTGCAGCATCAGGTCATCGAAGTTGTTATTGTTATCGTCATTCTATAGCA
CGGTTTTCCAAATTGACTTGTTTGGTCAGATTAATTTTTAGCCTTCAAGG
GTCAGGTGGTCTTTTGTCTCAAAACTTGGTCAAAAATCTTGGCTAGAGTC
GTTTTCCATCTGAAACTTTAATTAACCAATGGGAAGGCTCCTGTTGGCTC
CTGTTTTAGTAGTTATTAATGTCTCAATTATTCAACTGTTTTCTTCTTTT
CAATATTTTAAACAATTTTATTTAGAAGTAAAATCTAACTCTTTGTAATT
TCAGTAATGGTTTTGGTAAATCACTATTTAGCTTTCCAATATTTTGCAAC
TGTCTACTACTCATTCACTGAGGTATGTTCAAAGTTTAATCATTTTCAAA
ATTTGTTTTATTATTGTTCTTAAAAAAGAGAATATAACTTGCTTCGATCG
TTTACCGAGCTCAATCTGTTTCAATCAAATTTGCAAAAGAGTTAAAAACG
TTCAAACTTAAGCCTCTTGGTTTGATTTGCTATTGAAGATAAGAGACATT
TCGGGACATTTCGGGTATAACTAACCATGCTAAAGACTGTACCCAAGGAC
TTAATTGGAACGAAGCTAGGCTTTTAAAGACTGAAGAGAACAAATTTGAT
AGAAAAGTGCGAGAGGCATTGGAAATCCAATTCCGTCAGACAGCGCCACA
TAGTGACCATGGTCTTAATTTAGACGATTGTCAGTATGTGACATCTAGGT
TTTGGAAACCTATGCTCTCGTACATTAGGGAGAAGACAANAAGACACTAC
ATTGACTTTTTTGACGTCAAAAAAAAGTCAAGGTAGCGCCTTCAACCGTT
TGTATTGTTTAGACCTGACGAAGACCTGCACCAAGCAGGTCGAAATATTG
TTTACACGAAAAAATATATACAGAATGACCATTAAAATGTTCTTTAAATT
AAGAGTTGCAAATGAATTAAAATAAACCAGCAGATTTTATTATTCAAGAT
GTCAGAATTTTTCATTTCATTTTAGATTTTGGCATATTTCACAATCTGTT
TGTGGATAGTTCCTTTCTCTTTTTTCGTATCACTCTCAATAAACGAATGC
GTGTTACCTACTACCATGCAAACCATGGATGCGCCATCTCATCAGTTGGG
TAGTAAGTCAAAATTGTTAAAACATGATTTTTTTGATCGTCAAAACCATT
TCCTTTTGTATCCTCTTCAAAACTACCATTAGACATTGTTCACAATCAAG
TCAAGGCTTCTTTTTAGGATGTTTAAATATCATACAGTCTGAGCGCTCTT
TGTAATGTAGCAAAGAATGGTTCTTTTAATAAGTCTATCTTTGAAAATAT
GCACGCTTTTTGCTATAATGTGGAAGCCACGACTTATTTCACATGGAAGA
TAAAATAATTAGAGCGCATGGACTTTATTCTGGTTTTTGATTGAGCTATA
TCTGTTTTAATCATTCTAACGTCTTCTAACAAATTAGGTAATGCACCACA
TGATCTGTTTCAAAGACCAAGGAGATCAGGTTTACTGGGTTTGTTTGATA
TGATTTCTGAAAAGAAAGATAAGATGAAAGAGGACTTGTTTGGACGAAGC
AAAATGTTTTAATAGTGGGTTCACTTTTGACAATTCTTTAATAAATGCAA
TAGAGATACTATATTTTAATTGTTTAAATGTTATTTATAAAGATACTATG
AGAATGGATGATGGGGCTGGGATTATTTCTTTTTGTCTTTGTATTGAACT
ATAAATATACTTAACTTTGAGTCAAATCAACAACTATATGCAGTTTCCAA
AAAACTATTCAATATATCATTCTAACATAAGTAGTCGTTCTATTCATGAT
ATGCACCACTGCAATGACTTCACAAATTATGTAACTCTATTGTTTTTGTT
TTCATCCAATGCGTCACTTTTTCTATTGTTTAAGTGACGTATTAGTTGGA
AAATTTTCAAAGCTCTCAAAAGACACCCAGTGGTAAAAAATATAAAAATA
AAANCCCAGTGGTGTATATCATGAATTGTCGAAATTATGTATTCCAGCTC
CATAAACTGATCATTTTAAGGCTTTTTAGACGAATTTTTCTTAATTATTA
AAACTATAAAATGTATTTTCATGTTTTTGTACCTCAAATACTTTGTGATA
AAATTATGTGCTAGACGTATGTATGTAAATATTTAAAATTAGTATACAGC
CAAGAGAAGTAAAGAATCTTGTGTTTGATTGTCTTTACTTTTCATCCAGC
TTTCTCCTAAAGGGATTTACAATGTTGAACTACGCAGGCTTACTAGTTAT
CTTTTTTTTAATTCTGTGTAATTACTG

Coding sequence (CDS) from alignment at scaffold_60:1336049..1346025-

>TCONS_00071425 ID=TCONS_00071425|Name=TCONS_00071425|organism=Clytia hemisphaerica|type=CDS|length=3744bp|location=Sequence derived from alignment at scaffold_60:1336049..1346025- (Clytia hemisphaerica)
GTAATGCACCACATGATCTGTTTCAAAGACCAAGGAGATCAGGTTTACTG
GGTTTGTTTGATATGATTTCTGAAAAGAAAGATAAGATGAAAGAGGACTT
GTTTGGACGAAGCAAAATGTTTTAAATTTTGGCATATTTCACAATCTGTT
TGTGGATAGTTCCTTTCTCTTTTTTCGTATCACTCTCAATAAACGAATGC
GTGTTACCTACTACCATGCAAACCATGGATGCGCCATCTCATCAGTTGGG
TATAATGGTTTTGGTAAATCACTATTTAGCTTTCCAATATTTTGCAACTG
TCTACTACTCATTCACTGAGTTTACTACAAGTATTTTTGGAATGTTGTAT
CTCTTCGAAGGCTTTCCATTATACTTGATATTGATTGGGTTGTTATCAAA
TGTGGATTATTATATACTACTCAACACATTCCCTTATATCTCTATAAGTC
AACCAACGTTTGTTATTGGTTCTGCTGCTGGTCTTTACTACATAGCTGAG
GCAGTTGAAGAGTATAGCAGTGTTGCAGCAAAAGTCATCAAATATTCAAT
ATACATGTGGTTTATGCAATTATTGAGCTATGTTGCAACAATCTTTCATT
TTATATTTTGTACCTTATCTTTAGGTAATGCACCACATGATCTGTTTCAA
AGACCAAGGAGATCAGGTTTACTGGGTTTGTTTGATATGATTTCTGAAAA
GAAAGATAAGATGAAAGAGGACTTGTTTGGACGAAGCAAAATGTTTTAAA
TTTTGGCATATTTCACAATCTGTTTGTGGATAGTTCCTTTCTCTTTTTTC
GTATCACTCTCAATAAACGAATGCGTGTTACCTACTACCATGCAAACCAT
GGATGCGCCATCTCATCAGTTGGGTATAATGGTTTTGGTAAATCACTATT
TAGCTTTCCAATATTTTGCAACTGTCTACTACTCATTCACTGAGTTTACT
ACAAGTATTTTTGGAATGTTGTATCTCTTCGAAGGCTTTCCATTATACTT
GATATTGATTGGGTTGTTATCAAATGTGGATTATTATATACTACTCAACA
CATTCCCTTATATCTCTATAAGTCAACCAACGTTTGTTATTGGTTCTGCT
GCTGGTCTTTACTACATAGCTGAGGCAGTTGAAGAGTATAGCAGTGTTGC
AGCAAAAGTCATCAAATATTCAATATACATGTGGTTTATGCAATTATTGA
GCTATGTTGCAACAATCTTTCATTTTATATTTTGTACCTTATCTTTAGGT
AATGCACCACATGATCTGTTTCAAAGACCAAGGAGATCAGGTTTACTGGG
TTTGTTTGATATGATTTCTGAAAAGAAAGATAAGATGAAAGAGGACTTGT
TTGGACGAAGCAAAATGTTTTAAATTTTGGCATATTTCACAATCTGTTTG
TGGATAGTTCCTTTCTCTTTTTTCGTATCACTCTCAATAAACGAATGCGT
GTTACCTACTACCATGCAAACCATGGATGCGCCATCTCATCAGTTGGGTA
TAATGGTTTTGGTAAATCACTATTTAGCTTTCCAATATTTTGCAACTGTC
TACTACTCATTCACTGAGTTTACTACAAGTATTTTTGGAATGTTGTATCT
CTTCGAAGGCTTTCCATTATACTTGATATTGATTGGGTTGTTATCAAATG
TGGATTATTATATACTACTCAACACATTCCCTTATATCTCTATAAGTCAA
CCAACGTTTGTTATTGGTTCTGCTGCTGGTCTTTACTACATAGCTGAGGC
AGTTGAAGAGTATAGCAGTGTTGCAGCAAAAGTCATCAAATATTCAATAT
ACATGTGGTTTATGCAATTATTGAGCTATGTTGCAACAATCTTTCATTTT
ATATTTTGTACCTTATCTTTAGGTAATGCACCACATGATCTGTTTCAAAG
ACCAAGGAGATCAGGTTTACTGGGTTTGTTTGATATGATTTCTGAAAAGA
AAGATAAGATGAAAGAGGACTTGTTTGGACGAAGCAAAATGTTTTAAATT
TTGGCATATTTCACAATCTGTTTGTGGATAGTTCCTTTCTCTTTTTTCGT
ATCACTCTCAATAAACGAATGCGTGTTACCTACTACCATGCAAACCATGG
ATGCGCCATCTCATCAGTTGGGTATAATGGTTTTGGTAAATCACTATTTA
GCTTTCCAATATTTTGCAACTGTCTACTACTCATTCACTGAGTTTACTAC
AAGTATTTTTGGAATGTTGTATCTCTTCGAAGGCTTTCCATTATACTTGA
TATTGATTGGGTTGTTATCAAATGTGGATTATTATATACTACTCAACACA
TTCCCTTATATCTCTATAAGTCAACCAACGTTTGTTATTGGTTCTGCTGC
TGGTCTTTACTACATAGCTGAGGCAGTTGAAGAGTATAGCAGTGTTGCAG
CAAAAGTCATCAAATATTCAATATACATGTGGTTTATGCAATTATTGAGC
TATGTTGCAACAATCTTTCATTTTATATTTTGTACCTTATCTTTAGGTAA
TGCACCACATGATCTGTTTCAAAGACCAAGGAGATCAGGTTTACTGGGTT
TGTTTGATATGATTTCTGAAAAGAAAGATAAGATGAAAGAGGACTTGTTT
GGACGAAGCAAAATGTTTTAAATTTTGGCATATTTCACAATCTGTTTGTG
GATAGTTCCTTTCTCTTTTTTCGTATCACTCTCAATAAACGAATGCGTGT
TACCTACTACCATGCAAACCATGGATGCGCCATCTCATCAGTTGGGTATA
ATGGTTTTGGTAAATCACTATTTAGCTTTCCAATATTTTGCAACTGTCTA
CTACTCATTCACTGAGTTTACTACAAGTATTTTTGGAATGTTGTATCTCT
TCGAAGGCTTTCCATTATACTTGATATTGATTGGGTTGTTATCAAATGTG
GATTATTATATACTACTCAACACATTCCCTTATATCTCTATAAGTCAACC
AACGTTTGTTATTGGTTCTGCTGCTGGTCTTTACTACATAGCTGAGGCAG
TTGAAGAGTATAGCAGTGTTGCAGCAAAAGTCATCAAATATTCAATATAC
ATGTGGTTTATGCAATTATTGAGCTATGTTGCAACAATCTTTCATTTTAT
ATTTTGTACCTTATCTTTAGGTAATGCACCACATGATCTGTTTCAAAGAC
CAAGGAGATCAGGTTTACTGGGTTTGTTTGATATGATTTCTGAAAAGAAA
GATAAGATGAAAGAGGACTTGTTTGGACGAAGCAAAATGTTTTAAATTTT
GGCATATTTCACAATCTGTTTGTGGATAGTTCCTTTCTCTTTTTTCGTAT
CACTCTCAATAAACGAATGCGTGTTACCTACTACCATGCAAACCATGGAT
GCGCCATCTCATCAGTTGGGTATAATGGTTTTGGTAAATCACTATTTAGC
TTTCCAATATTTTGCAACTGTCTACTACTCATTCACTGAGTTTACTACAA
GTATTTTTGGAATGTTGTATCTCTTCGAAGGCTTTCCATTATACTTGATA
TTGATTGGGTTGTTATCAAATGTGGATTATTATATACTACTCAACACATT
CCCTTATATCTCTATAAGTCAACCAACGTTTGTTATTGGTTCTGCTGCTG
GTCTTTACTACATAGCTGAGGCAGTTGAAGAGTATAGCAGTGTTGCAGCA
AAAGTCATCAAATATTCAATATACATGTGGTTTATGCAATTATTGAGCTA
TGTTGCAACAATCTTTCATTTTATATTTTGTACCTTATCTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044368XLOC_044368Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071425-proteinTCONS_00071425-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071425-exon-scaffold_60-1575043694:1345960..1346025TCONS_00071425-exon-scaffold_60-1575043694:1345960..1346025Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1575043694:1339681..1339798TCONS_00071425-exon-scaffold_60-1575043694:1339681..1339798Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1575043694:1339126..1339205TCONS_00071425-exon-scaffold_60-1575043694:1339126..1339205Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1575043694:1338427..1338580TCONS_00071425-exon-scaffold_60-1575043694:1338427..1338580Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1575043694:1338004..1338071TCONS_00071425-exon-scaffold_60-1575043694:1338004..1338071Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1575043694:1337224..1337350TCONS_00071425-exon-scaffold_60-1575043694:1337224..1337350Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1575043694:1336049..1336888TCONS_00071425-exon-scaffold_60-1575043694:1336049..1336888Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1510915933:1345960..1346025TCONS_00071425-exon-scaffold_60-1510915933:1345960..1346025Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1510915933:1339681..1339798TCONS_00071425-exon-scaffold_60-1510915933:1339681..1339798Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1510915933:1339126..1339205TCONS_00071425-exon-scaffold_60-1510915933:1339126..1339205Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1510915933:1338427..1338580TCONS_00071425-exon-scaffold_60-1510915933:1338427..1338580Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1510915933:1338004..1338071TCONS_00071425-exon-scaffold_60-1510915933:1338004..1338071Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1510915933:1337224..1337350TCONS_00071425-exon-scaffold_60-1510915933:1337224..1337350Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1510915933:1336049..1336888TCONS_00071425-exon-scaffold_60-1510915933:1336049..1336888Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1491911889:1345960..1346025TCONS_00071425-exon-scaffold_60-1491911889:1345960..1346025Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1491911889:1339681..1339798TCONS_00071425-exon-scaffold_60-1491911889:1339681..1339798Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1491911889:1339126..1339205TCONS_00071425-exon-scaffold_60-1491911889:1339126..1339205Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1491911889:1338427..1338580TCONS_00071425-exon-scaffold_60-1491911889:1338427..1338580Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1491911889:1338004..1338071TCONS_00071425-exon-scaffold_60-1491911889:1338004..1338071Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1491911889:1337224..1337350TCONS_00071425-exon-scaffold_60-1491911889:1337224..1337350Clytia hemisphaericaexon
TCONS_00071425-exon-scaffold_60-1491911889:1336049..1336888TCONS_00071425-exon-scaffold_60-1491911889:1336049..1336888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1336049..1346025 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.0555	19.7228	4.24104	2.0265	36.5403	19.6678	11.3297	12.3946	9.44637	9.13881	9.16273	7.50399	5.91826	5.93902	6.20233	5.83985	7.28021	8.75554	4.79218	6.09286	9.79797	8.47557	36.3143	30.3208	9.4921	10.795	8.17529	5.30025	17.0298	18.0358
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007277Transmembrane_adaptor_Erv26
Blast
[Close]
BLAST of TCONS_00071425 vs. Swiss-Prot (Human)
Match: TX261 (Protein TEX261 OS=Homo sapiens GN=TEX261 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.637e-49
Identity = 95/201 (47.26%), Postives = 138/201 (68.66%), Query Frame = 1 
Query:  115 MWFMQLLSYVATIFHFIFCTLSLAAGLYYIXXXXXXXXXXXXKVIKYSIYFTTSIFGMLYLFEGFPLYLILIGLLSNVDYYILLNTFPYISISQPTFVIGSVMVLVNHYLAFQYFATVYYSFTEILAYFTICLWIVPFSFFVSLSINECVLPTTMQTMDAPSHQLGSNAPHDLFQRPRRSGLLGLFDMISEKKDKMKEDLF 717
            MWFM LLS+++      F TL++AAGLYY+AE +EEY+   +++IKY I+F+T++   LY+FE FP  +I +GL +N+ Y+ LL TFP+I ++ P F++   +V+VNHYLAFQ+FA  YY F+E+LAYFT CLWI+PF+FFVSLS  E VLP+TMQ    P   + SN      +R +R G+L +F  I E     ++ ++
Sbjct:    1 MWFMYLLSWLSLFIQVAFITLAVAAGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFERFPTSMIGVGLFTNLVYFGLLQTFPFIMLTSPNFILSCGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAFFVSLSAGENVLPSTMQ----PGDDVVSNY-FTKGKRGKRLGILVVFSFIKEAILPSRQKIY 196
The following BLAST results are available for this feature:
BLAST of TCONS_00071425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TX2611.637e-4947.26Protein TEX261 OS=Homo sapiens GN=TEX261 PE=2 SV=1[more]
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